Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 C 1.53007 * 109.47158 * 59.71780 * 3 2 1 5 5 C 1.53001 * 109.46826 * 65.45760 * 4 3 2 6 6 C 1.52999 * 109.47278 * 299.72238 * 3 2 1 7 7 H 1.09000 * 109.47645 * 59.99441 * 6 3 2 8 8 C 1.52998 * 109.47278 * 179.97438 * 6 3 2 9 9 C 1.50706 * 109.46816 * 299.99817 * 6 3 2 10 10 O 1.21287 * 119.99795 * 329.04788 * 9 6 3 11 11 N 1.34777 * 119.99784 * 149.04706 * 9 6 3 12 12 C 1.46918 * 120.63306 * 4.87952 * 11 9 6 13 13 C 1.53629 * 108.54263 * 126.36657 * 12 11 9 14 14 C 1.53043 * 109.23810 * 54.85951 * 13 12 11 15 15 C 1.50700 * 109.44829 * 178.49538 * 14 13 12 16 16 H 1.08006 * 119.99851 * 120.06249 * 15 14 13 17 17 C 1.37874 * 120.00210 * 300.06212 * 15 14 13 18 18 N 1.31510 * 120.00026 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00264 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47046 * 59.99578 * 19 17 15 21 21 H 1.48501 * 109.47484 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46975 * 300.00275 * 19 17 15 23 23 C 1.53038 * 109.53697 * 298.50976 * 14 13 12 24 24 C 1.46923 * 120.62723 * 185.16455 * 11 9 6 25 25 H 1.09002 * 109.46877 * 58.04729 * 1 2 3 26 26 H 1.09001 * 109.47442 * 178.04053 * 1 2 3 27 27 H 1.08994 * 109.47540 * 298.04567 * 1 2 3 28 28 H 1.09001 * 109.46842 * 119.99907 * 2 1 3 29 29 H 1.08996 * 109.47270 * 239.99915 * 2 1 3 30 30 H 1.08996 * 109.47616 * 179.71741 * 3 2 1 31 31 H 1.08998 * 109.47204 * 185.45491 * 4 3 2 32 32 H 1.08997 * 109.46990 * 305.45982 * 4 3 2 33 33 H 1.09001 * 109.46763 * 182.79087 * 5 4 3 34 34 H 1.08990 * 109.47220 * 302.79318 * 5 4 3 35 35 H 1.08999 * 109.47025 * 62.79549 * 5 4 3 36 36 H 1.09005 * 109.47017 * 172.55635 * 8 6 3 37 37 H 1.08992 * 109.47493 * 292.55931 * 8 6 3 38 38 H 1.09004 * 109.47234 * 52.56437 * 8 6 3 39 39 H 1.09000 * 109.59172 * 246.20456 * 12 11 9 40 40 H 1.09008 * 109.58749 * 6.63327 * 12 11 9 41 41 H 1.08998 * 109.63659 * 294.87045 * 13 12 11 42 42 H 1.08996 * 109.43131 * 174.72288 * 13 12 11 43 43 H 1.09000 * 109.46067 * 58.53240 * 14 13 12 44 44 H 0.97007 * 120.00620 * 179.97438 * 18 17 15 45 45 H 1.08996 * 109.49904 * 301.41259 * 23 14 13 46 46 H 1.09000 * 109.49470 * 181.31566 * 23 14 13 47 47 H 1.09007 * 109.58986 * 353.36828 * 24 11 9 48 48 H 1.08997 * 109.59080 * 113.65633 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5241 2.1658 1.2457 5 6 2.1373 1.5301 2.4951 6 6 1.5357 2.1617 -1.2527 7 1 0.4457 2.1617 -1.2578 8 6 2.0451 3.6044 -1.2524 9 6 2.0438 1.4493 -2.4797 10 8 3.1115 0.8749 -2.4489 11 7 1.3115 1.4505 -3.6112 12 6 0.0688 2.2295 -3.6979 13 6 0.1495 3.1425 -4.9308 14 6 0.4461 2.2930 -6.1688 15 6 0.4897 3.1794 -7.3868 16 1 1.3904 3.2383 -7.9799 17 6 -0.6202 3.9152 -7.7441 18 7 -1.7168 3.8439 -7.0217 19 14 -0.5660 5.0144 -9.2535 20 1 -0.2793 4.1909 -10.4554 21 1 -1.8763 5.6933 -9.4189 22 1 0.5012 6.0334 -9.0856 23 6 1.7968 1.5940 -5.9983 24 6 1.7377 0.6680 -4.7794 25 1 -0.3633 0.5439 -0.8720 26 1 -0.3634 -1.0271 -0.0351 27 1 -0.3634 0.4831 0.9069 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 0.0051 31 1 1.8057 3.2177 1.1978 32 1 0.4384 2.0820 1.2910 33 1 1.7320 2.0127 3.3844 34 1 1.8972 0.4672 2.5171 35 1 3.2196 1.6578 2.4738 36 1 1.7989 4.0769 -2.2034 37 1 1.5732 4.1562 -0.4396 38 1 3.1264 3.6079 -1.1142 39 1 -0.7804 1.5531 -3.7956 40 1 -0.0458 2.8359 -2.7994 41 1 0.9451 3.8747 -4.7929 42 1 -0.8015 3.6583 -5.0629 43 1 -0.3370 1.5449 -6.2920 44 1 -2.4977 4.3618 -7.2728 45 1 2.5768 2.3408 -5.8504 46 1 2.0181 1.0078 -6.8902 47 1 2.7246 0.2436 -4.5948 48 1 1.0232 -0.1347 -4.9620 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543833207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = -86.012247 kcal Electronic energy + Delta-G solvation = -23852.347449 eV Core-core repulsion = 20712.209474 eV Total energy + Delta-G solvation = -3140.137975 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53750 -39.00704 -37.78660 -35.33952 -33.69546 -32.57474 -32.09263 -31.53491 -28.10625 -27.28626 -25.55388 -24.26948 -24.21384 -23.54405 -21.52307 -20.16363 -19.20788 -18.63237 -17.98100 -16.93061 -16.58673 -16.45431 -16.20252 -15.31494 -15.10860 -15.04600 -14.75102 -14.46950 -14.37433 -14.03473 -13.77665 -13.69315 -13.29480 -13.19464 -13.09793 -13.04755 -12.80517 -12.64014 -12.49343 -12.46860 -12.24864 -12.14620 -11.97223 -11.81732 -11.50784 -11.35357 -11.22702 -11.08489 -11.00641 -10.88028 -10.49070 -10.35988 -9.51123 -8.07700 -6.20974 1.42640 1.43268 1.50615 1.69318 2.13108 2.44169 3.18607 3.52419 3.70593 3.90837 4.03675 4.13961 4.25139 4.32648 4.39048 4.40172 4.44760 4.49505 4.50701 4.56043 4.60948 4.67593 4.74939 4.83044 4.85329 4.91813 4.94702 4.97677 5.02017 5.10669 5.16569 5.17935 5.22625 5.25830 5.34156 5.36135 5.41689 5.43416 5.50654 5.57909 5.66281 5.68712 5.98625 6.13418 6.39363 6.56707 6.87630 7.24792 7.46539 8.95436 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029647 B = 0.004037 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.204351 B = 6934.392826 C = 7170.316027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.152 4.152 6 C -0.105 4.105 7 H 0.108 0.892 8 C -0.141 4.141 9 C 0.516 3.484 10 O -0.589 6.589 11 N -0.605 5.605 12 C 0.113 3.887 13 C -0.112 4.112 14 C 0.047 3.953 15 C -0.538 4.538 16 H 0.045 0.955 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 0.948 3.052 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.276 1.276 23 C -0.113 4.113 24 C 0.116 3.884 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.027 0.973 42 H 0.081 0.919 43 H 0.003 0.997 44 H 0.262 0.738 45 H 0.038 0.962 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 -3.003 17.214 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.083 4.083 4 C -0.156 4.156 5 C -0.209 4.209 6 C -0.125 4.125 7 H 0.126 0.874 8 C -0.198 4.198 9 C 0.307 3.693 10 O -0.470 6.470 11 N -0.337 5.337 12 C -0.009 4.009 13 C -0.151 4.151 14 C 0.028 3.972 15 C -0.576 4.576 16 H 0.063 0.937 17 C -0.179 4.179 18 N -0.549 5.549 19 Si 0.774 3.226 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.201 1.201 23 C -0.151 4.151 24 C -0.007 4.007 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.045 0.955 42 H 0.099 0.901 43 H 0.022 0.978 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.438 -3.233 17.218 17.688 hybrid contribution 0.066 0.503 -1.539 1.620 sum 2.504 -2.729 15.680 16.111 Atomic orbital electron populations 1.21882 0.94968 1.01809 1.02364 1.21562 0.96769 0.96240 1.01305 1.20995 0.99872 0.94597 0.92838 1.21676 1.01355 0.99776 0.92827 1.21797 1.00598 1.01107 0.97374 1.21517 1.02714 0.96545 0.91766 0.87444 1.21801 1.01646 0.93285 1.03106 1.21239 0.83615 0.79605 0.84872 1.90595 1.23615 1.47834 1.84963 1.48314 1.25010 1.47433 1.12934 1.22030 0.84847 0.94108 0.99897 1.21845 1.01928 0.97559 0.93770 1.18589 0.91618 0.93664 0.93285 1.21509 0.98304 1.26551 1.11234 0.93678 1.25601 0.95201 0.97925 0.99171 1.69929 1.03002 1.42214 1.39747 0.85780 0.77230 0.79179 0.80437 1.20095 1.20654 1.20105 1.21840 0.99016 0.97875 0.96349 1.21544 1.00422 0.93611 0.85098 0.93395 0.92824 0.90556 0.90753 0.94686 0.92206 0.90884 0.90479 0.91634 0.92522 0.93301 0.93263 0.88407 0.92746 0.91617 0.88258 0.95463 0.90112 0.97845 0.92852 0.94274 0.92043 0.90547 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.21 71.98 0.66 -2.28 16 2 C -0.12 -2.74 5.20 30.59 0.16 -2.58 16 3 C -0.06 -1.43 1.40 -10.79 -0.02 -1.44 16 4 C -0.12 -1.90 4.98 30.60 0.15 -1.75 16 5 C -0.15 -2.17 9.74 71.98 0.70 -1.47 16 6 C -0.10 -2.62 1.13 -11.54 -0.01 -2.63 16 7 H 0.11 2.40 4.63 -2.39 -0.01 2.39 16 8 C -0.14 -3.25 8.41 71.98 0.61 -2.65 16 9 C 0.52 17.50 5.78 87.66 0.51 18.01 16 10 O -0.59 -23.61 14.85 -3.05 -0.05 -23.65 16 11 N -0.61 -21.41 2.97 -818.04 -2.43 -23.84 16 12 C 0.11 3.89 6.18 86.51 0.53 4.42 16 13 C -0.11 -4.94 5.17 30.82 0.16 -4.78 16 14 C 0.05 2.27 2.06 -11.51 -0.02 2.25 16 15 C -0.54 -29.14 8.56 25.60 0.22 -28.92 16 16 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 17 C 0.02 1.09 5.30 84.65 0.45 1.54 16 18 N -0.91 -49.77 11.30 21.45 0.24 -49.53 16 19 Si 0.95 42.71 29.54 68.60 2.03 44.73 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 C -0.11 -4.75 5.30 30.67 0.16 -4.58 16 24 C 0.12 4.31 6.44 86.36 0.56 4.87 16 25 H 0.05 1.00 6.33 -2.39 -0.02 0.99 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 1.17 6.41 -2.39 -0.02 1.15 16 28 H 0.07 1.48 6.53 -2.39 -0.02 1.46 16 29 H 0.03 1.01 6.67 -2.39 -0.02 0.99 16 30 H 0.06 1.58 7.85 -2.39 -0.02 1.56 16 31 H 0.07 1.07 6.32 -2.39 -0.02 1.06 16 32 H 0.08 1.09 6.19 -2.39 -0.01 1.08 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.81 6.46 -2.39 -0.02 0.79 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 1.29 7.89 -2.38 -0.02 1.27 16 37 H 0.10 1.65 6.72 -2.39 -0.02 1.64 16 38 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.10 2.81 5.27 -2.38 -0.01 2.80 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 3.95 6.03 -2.39 -0.01 3.94 16 43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.26 13.71 8.31 -92.70 -0.77 12.94 16 45 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.08 2.87 7.00 -2.38 -0.02 2.85 16 48 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -61.32 352.62 5.53 -55.79 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.92 Total: 18.50 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 4.82 Total: -22.01 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -2.18 Total: -73.36 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -61.32 5.53 -55.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543833207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.226 kcal (2) G-P(sol) polarization free energy of solvation -61.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds