Wall clock time and date at job start Tue Mar 31 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47407 * 2 1 4 4 C 1.53006 * 109.46822 * 301.55114 * 3 2 1 5 5 C 1.53002 * 109.46802 * 294.97270 * 4 3 2 6 6 C 1.53001 * 109.47035 * 61.54145 * 3 2 1 7 7 C 1.50706 * 109.46444 * 65.00629 * 6 3 2 8 8 O 1.21278 * 120.00380 * 359.97438 * 7 6 3 9 9 N 1.34780 * 119.99623 * 179.97438 * 7 6 3 10 10 C 1.46925 * 120.63063 * 180.02562 * 9 7 6 11 11 C 1.53191 * 108.89455 * 126.33961 * 10 9 7 12 12 C 1.53353 * 109.14950 * 54.58171 * 11 10 9 13 13 C 1.52995 * 109.41808 * 178.67367 * 12 11 10 14 14 C 1.50698 * 109.47071 * 295.12394 * 13 12 11 15 15 H 1.07995 * 120.00445 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99886 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00247 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99989 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46830 * 90.00261 * 18 16 14 20 20 H 1.48496 * 109.47153 * 210.00278 * 18 16 14 21 21 H 1.48502 * 109.47105 * 330.00338 * 18 16 14 22 22 C 1.53044 * 109.60481 * 298.70902 * 12 11 10 23 23 C 1.46930 * 120.63320 * 0.02562 * 9 7 6 24 24 H 1.09003 * 109.47285 * 181.88545 * 1 2 3 25 25 H 1.08997 * 109.47605 * 301.88638 * 1 2 3 26 26 H 1.09001 * 109.47459 * 61.88717 * 1 2 3 27 27 H 1.09000 * 109.47508 * 239.99529 * 2 1 3 28 28 H 1.09005 * 109.47217 * 119.99587 * 2 1 3 29 29 H 1.08995 * 109.47521 * 181.55070 * 3 2 1 30 30 H 1.08999 * 109.46934 * 54.97230 * 4 3 2 31 31 H 1.08999 * 109.46897 * 174.97508 * 4 3 2 32 32 H 1.08997 * 109.47042 * 185.79909 * 5 4 3 33 33 H 1.09000 * 109.47413 * 305.79915 * 5 4 3 34 34 H 1.09004 * 109.47168 * 65.79794 * 5 4 3 35 35 H 1.08998 * 109.47914 * 305.00794 * 6 3 2 36 36 H 1.09001 * 109.47253 * 184.99816 * 6 3 2 37 37 H 1.09002 * 109.58572 * 246.20257 * 10 9 7 38 38 H 1.09001 * 109.58781 * 6.48043 * 10 9 7 39 39 H 1.09005 * 109.49564 * 174.65984 * 11 10 9 40 40 H 1.08993 * 109.49954 * 294.75486 * 11 10 9 41 41 H 1.09001 * 109.42484 * 58.74595 * 12 11 10 42 42 H 1.09007 * 109.47446 * 55.12641 * 13 12 11 43 43 H 1.09005 * 109.46976 * 175.12258 * 13 12 11 44 44 H 0.96995 * 120.00052 * 179.97438 * 17 16 14 45 45 H 1.09003 * 109.49538 * 301.42683 * 22 12 11 46 46 H 1.08994 * 109.52403 * 181.34147 * 22 12 11 47 47 H 1.09008 * 109.58380 * 353.37377 * 23 9 7 48 48 H 1.08995 * 109.58511 * 113.65928 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4984 2.1749 -1.2293 5 6 2.0769 1.5416 -2.4963 6 6 1.5620 2.1525 1.2682 7 6 2.1939 1.5062 2.4741 8 8 2.9515 0.5697 2.3331 9 7 1.9171 1.9689 3.7093 10 6 2.5258 1.3497 4.8945 11 6 3.2154 2.4377 5.7237 12 6 2.2041 3.5463 6.0395 13 6 2.8778 4.6205 6.8957 14 6 3.2599 4.0330 8.2298 15 1 3.0442 2.9970 8.4454 16 6 3.8858 4.8179 9.1749 17 7 4.1490 6.0794 8.9124 18 14 4.3588 4.0898 10.8289 19 1 5.7309 3.5277 10.7481 20 1 4.3190 5.1513 11.8666 21 1 3.4024 3.0116 11.1869 22 6 1.7048 4.1727 4.7355 23 6 1.0008 3.1022 3.8963 24 1 -0.3634 -1.0271 0.0338 25 1 -0.3634 0.5428 0.8725 26 1 -0.3634 0.4842 -0.9064 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.1296 1.4426 -0.0278 30 1 0.4113 2.0979 -1.2484 31 1 1.7875 3.2249 -1.1834 32 1 1.7740 2.1256 -3.3653 33 1 3.1648 1.5257 -2.4304 34 1 1.7040 0.5221 -2.5957 35 1 0.4772 2.0750 1.3412 36 1 1.8493 3.2031 1.2267 37 1 1.7523 0.8689 5.4935 38 1 3.2604 0.6074 4.5824 39 1 3.5886 2.0056 6.6523 40 1 4.0470 2.8552 5.1562 41 1 1.3608 3.1230 6.5852 42 1 3.7724 4.9817 6.3881 43 1 2.1869 5.4497 7.0483 44 1 4.5890 6.6316 9.5774 45 1 2.5508 4.5741 4.1774 46 1 1.0043 4.9763 4.9622 47 1 0.7311 3.5181 2.9254 48 1 0.1018 2.7641 4.4115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568515888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:15 Heat of formation + Delta-G solvation = -79.834378 kcal Electronic energy + Delta-G solvation = -22956.680014 eV Core-core repulsion = 19816.809931 eV Total energy + Delta-G solvation = -3139.870083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.23497 -37.97585 -36.64647 -34.01271 -32.16219 -31.47881 -31.01404 -29.78392 -27.97861 -25.37764 -24.42390 -23.63049 -22.63660 -21.76711 -19.95833 -19.10972 -18.40702 -16.92845 -16.27154 -16.15867 -15.54172 -15.46825 -14.53795 -14.47067 -14.01331 -13.76498 -13.65665 -13.25786 -13.06543 -12.93015 -12.79794 -12.61386 -12.17757 -12.13475 -11.99135 -11.88281 -11.54667 -11.25867 -11.19288 -11.01424 -10.75312 -10.69722 -10.57109 -10.55495 -10.47682 -10.42332 -10.14500 -9.65265 -9.46827 -9.25170 -8.97042 -8.36612 -8.30578 -6.00903 -4.02683 2.79341 3.19995 3.31029 3.37700 3.40331 4.44846 4.50037 4.62078 4.71112 4.93014 5.06290 5.08199 5.17157 5.27777 5.34305 5.35145 5.38095 5.42914 5.44685 5.50137 5.60079 5.62479 5.70435 5.71051 5.77295 5.83485 5.87133 5.97753 5.98270 6.05124 6.08159 6.16897 6.28716 6.34959 6.38906 6.45889 6.53874 6.67967 6.98547 7.01426 7.10995 7.62388 7.65375 7.79892 7.98689 8.36264 8.41530 9.03761 9.61279 11.10415 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037580 B = 0.003118 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.896478 B = 8977.729246 C = 9215.772682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.071 4.071 4 C -0.123 4.123 5 C -0.152 4.152 6 C -0.140 4.140 7 C 0.513 3.487 8 O -0.547 6.547 9 N -0.607 5.607 10 C 0.108 3.892 11 C -0.117 4.117 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.516 4.516 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.131 4.131 23 C 0.107 3.893 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.260 0.740 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.470 -7.563 -18.843 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.164 4.164 3 C -0.090 4.090 4 C -0.161 4.161 5 C -0.209 4.209 6 C -0.180 4.180 7 C 0.302 3.698 8 O -0.426 6.426 9 N -0.340 5.340 10 C -0.014 4.014 11 C -0.155 4.155 12 C -0.099 4.099 13 C -0.009 4.009 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.169 4.169 23 C -0.016 4.016 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.999 -7.901 -18.830 21.931 hybrid contribution 0.266 -0.081 1.119 1.153 sum -7.733 -7.982 -17.711 20.909 Atomic orbital electron populations 1.21903 0.96655 1.01254 1.01439 1.21674 0.95229 0.96346 1.03148 1.20950 1.00944 0.94965 0.92132 1.21651 1.00795 0.99326 0.94306 1.21782 1.01107 1.00848 0.97146 1.21849 1.01976 1.00961 0.93173 1.20638 0.81431 0.83516 0.84242 1.90623 1.37089 1.29107 1.85765 1.48215 1.46250 1.33343 1.06213 1.21750 0.97626 0.96464 0.85548 1.21939 0.98227 0.95733 0.99620 1.21243 0.97571 0.97061 0.94050 1.19121 0.95345 0.92834 0.93612 1.21240 1.38048 0.96817 0.99321 0.92600 1.25021 0.96027 0.94857 0.98567 1.69959 1.42463 1.06175 1.34962 0.86643 0.78914 0.78803 0.83946 1.20703 1.21293 1.19897 1.22023 1.00293 0.97090 0.97464 1.21820 0.92252 0.86988 1.00557 0.93185 0.92889 0.92705 0.92258 0.89965 0.90492 0.91589 0.92107 0.93036 0.92720 0.92574 0.88885 0.89092 0.92075 0.89763 0.89856 0.92442 0.92382 0.96676 0.96632 0.93053 0.92015 0.91072 0.90487 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.21 37.15 0.34 -1.03 16 2 C -0.13 -1.32 5.18 -26.73 -0.14 -1.46 16 3 C -0.07 -0.72 1.81 -90.61 -0.16 -0.88 16 4 C -0.12 -0.99 5.15 -26.73 -0.14 -1.13 16 5 C -0.15 -1.15 9.52 37.16 0.35 -0.79 16 6 C -0.14 -1.46 3.34 -27.88 -0.09 -1.55 16 7 C 0.51 7.34 7.40 -10.98 -0.08 7.26 16 8 O -0.55 -9.47 13.38 5.56 0.07 -9.40 16 9 N -0.61 -8.75 2.97 -172.78 -0.51 -9.26 16 10 C 0.11 1.71 6.42 -3.71 -0.02 1.69 16 11 C -0.12 -2.14 5.21 -26.45 -0.14 -2.28 16 12 C -0.08 -1.54 2.10 -90.42 -0.19 -1.73 16 13 C 0.03 0.69 4.45 -27.89 -0.12 0.56 16 14 C -0.52 -14.07 8.39 -34.44 -0.29 -14.35 16 15 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 18 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.13 -2.01 5.36 -26.62 -0.14 -2.16 16 23 C 0.11 1.33 6.34 -3.72 -0.02 1.30 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.47 6.27 -51.93 -0.33 0.15 16 26 H 0.05 0.42 6.39 -51.93 -0.33 0.09 16 27 H 0.06 0.58 6.77 -51.93 -0.35 0.23 16 28 H 0.08 1.09 5.92 -51.93 -0.31 0.78 16 29 H 0.08 0.92 7.96 -51.93 -0.41 0.50 16 30 H 0.07 0.49 6.17 -51.93 -0.32 0.16 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.42 6.89 -51.93 -0.36 0.06 16 35 H 0.09 0.83 5.98 -51.93 -0.31 0.52 16 36 H 0.09 0.86 7.69 -51.93 -0.40 0.46 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 39 H 0.08 1.63 6.93 -51.93 -0.36 1.27 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.08 0.75 5.93 -51.92 -0.31 0.44 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -30.55 358.84 -8.99 -39.54 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.73 Total: -1.75 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.95 Total: -15.07 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.22 Total: -35.15 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.55 -8.99 -39.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568515888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.292 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds