Wall clock time and date at job start Tue Mar 31 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47188 * 2 1 4 4 C 1.53003 * 109.46970 * 119.99746 * 2 1 3 5 5 C 1.53002 * 109.46973 * 53.94157 * 4 2 1 6 6 C 1.53000 * 109.47220 * 293.94589 * 4 2 1 7 7 C 1.50699 * 109.47162 * 173.94297 * 4 2 1 8 8 O 1.21281 * 119.99941 * 113.98178 * 7 4 2 9 9 N 1.34775 * 120.00070 * 293.98625 * 7 4 2 10 10 C 1.46924 * 120.62919 * 5.24044 * 9 7 4 11 11 C 1.53632 * 108.54053 * 126.37157 * 10 9 7 12 12 C 1.53043 * 109.23837 * 54.86033 * 11 10 9 13 13 C 1.52998 * 109.45821 * 178.49214 * 12 11 10 14 14 C 1.50699 * 109.47075 * 295.06581 * 13 12 11 15 15 H 1.07999 * 119.99864 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00159 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99588 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99890 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47402 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47046 * 120.00187 * 18 16 14 21 21 H 1.48508 * 109.47115 * 239.99575 * 18 16 14 22 22 C 1.53044 * 109.53777 * 298.51032 * 12 11 10 23 23 C 1.46928 * 120.63124 * 185.52733 * 9 7 4 24 24 H 1.09000 * 109.47171 * 300.00307 * 1 2 3 25 25 H 1.09003 * 109.46829 * 60.00265 * 1 2 3 26 26 H 1.09000 * 109.46917 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47171 * 239.99693 * 2 1 3 28 28 H 1.09006 * 109.47022 * 59.99461 * 3 2 1 29 29 H 1.08999 * 109.47234 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46937 * 300.00184 * 3 2 1 31 31 H 1.08993 * 109.47329 * 294.40226 * 5 4 2 32 32 H 1.09007 * 109.47003 * 54.40432 * 5 4 2 33 33 H 1.08999 * 109.46889 * 174.39689 * 5 4 2 34 34 H 1.08995 * 109.47127 * 184.22434 * 6 4 2 35 35 H 1.09003 * 109.47227 * 304.21931 * 6 4 2 36 36 H 1.08993 * 109.47368 * 64.21869 * 6 4 2 37 37 H 1.09001 * 109.59237 * 246.20378 * 10 9 7 38 38 H 1.09003 * 109.59078 * 6.63570 * 10 9 7 39 39 H 1.08994 * 109.63660 * 294.87020 * 11 10 9 40 40 H 1.09000 * 109.45475 * 174.73767 * 11 10 9 41 41 H 1.08999 * 109.45389 * 58.52474 * 12 11 10 42 42 H 1.08997 * 109.47439 * 55.06288 * 13 12 11 43 43 H 1.09009 * 109.47161 * 175.06750 * 13 12 11 44 44 H 0.97007 * 119.99782 * 180.02562 * 17 16 14 45 45 H 1.09002 * 109.49785 * 301.41344 * 22 12 11 46 46 H 1.08995 * 109.52611 * 181.33819 * 22 12 11 47 47 H 1.09002 * 109.58377 * 353.37672 * 23 9 7 48 48 H 1.09004 * 109.58441 * 113.65340 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.4094 -2.1130 1.3278 6 6 1.6580 0.0826 2.4939 7 6 3.5395 -0.8524 1.1767 8 8 4.2391 -0.2621 1.9724 9 7 4.1031 -1.6256 0.2275 10 6 3.2781 -2.2547 -0.8128 11 6 3.8534 -1.8782 -2.1867 12 6 5.3328 -2.2669 -2.2376 13 6 5.9015 -1.9284 -3.6171 14 6 5.2275 -2.7808 -4.6612 15 1 4.4697 -3.4930 -4.3699 16 6 5.5791 -2.6522 -5.9882 17 7 6.5030 -1.7859 -6.3426 18 14 4.7441 -3.7093 -7.2823 19 1 3.7498 -4.5981 -6.6293 20 1 4.0566 -2.8357 -8.2669 21 1 5.7627 -4.5349 -7.9796 22 6 6.1026 -1.4929 -1.1649 23 6 5.5535 -1.8604 0.2171 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 0.3345 -2.0169 1.4802 32 1 1.5980 -2.6503 0.3982 33 1 1.8468 -2.6636 2.1607 34 1 2.0853 -0.3912 3.3776 35 1 2.0442 1.0979 2.4034 36 1 0.5725 0.1137 2.5873 37 1 3.2978 -3.3376 -0.6897 38 1 2.2525 -1.8944 -0.7335 39 1 3.7539 -0.8042 -2.3436 40 1 3.3100 -2.4118 -2.9664 41 1 5.4335 -3.3369 -2.0559 42 1 5.7217 -0.8759 -3.8360 43 1 6.9740 -2.1233 -3.6258 44 1 6.7501 -1.6951 -7.2763 45 1 5.9818 -0.4225 -1.3315 46 1 7.1600 -1.7521 -1.2170 47 1 6.0295 -1.2400 0.9764 48 1 5.7550 -2.9113 0.4250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572123781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:17 Heat of formation + Delta-G solvation = -54.375168 kcal Electronic energy + Delta-G solvation = -24119.176613 eV Core-core repulsion = 20980.410525 eV Total energy + Delta-G solvation = -3138.766088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.90345 -37.71435 -36.85681 -33.99030 -32.20097 -31.45369 -30.69749 -28.19839 -28.02037 -26.60373 -25.03010 -23.70376 -22.82122 -21.80696 -20.20308 -19.49510 -18.27986 -16.52478 -16.27943 -16.02990 -15.47352 -14.82802 -14.58982 -14.27358 -14.11435 -13.73718 -13.39662 -13.19800 -12.98254 -12.85467 -12.65645 -12.41588 -12.25634 -12.06081 -11.93170 -11.76351 -11.68010 -11.33917 -11.17061 -11.11972 -10.92533 -10.82617 -10.70431 -10.62150 -10.52866 -10.21914 -10.01099 -9.68549 -9.37179 -9.17642 -8.96054 -8.37475 -8.28458 -6.01487 -4.03518 2.80206 3.21759 3.28460 3.36616 3.39122 4.40144 4.43594 4.54653 4.68181 5.01594 5.05852 5.14464 5.17925 5.31933 5.34891 5.41403 5.50960 5.53171 5.55008 5.58162 5.62290 5.70098 5.71682 5.75791 5.81927 5.83692 5.89715 5.95343 5.99817 6.06444 6.09005 6.17971 6.26440 6.36564 6.40127 6.41332 6.54144 6.71928 6.96768 6.99375 7.10507 7.64596 7.66311 7.80574 7.98427 8.37132 8.40715 9.03251 9.60411 11.09811 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022166 B = 0.004519 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.879958 B = 6194.720634 C = 6738.480872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.076 4.076 5 C -0.159 4.159 6 C -0.128 4.128 7 C 0.525 3.475 8 O -0.551 6.551 9 N -0.602 5.602 10 C 0.081 3.919 11 C -0.119 4.119 12 C -0.080 4.080 13 C 0.027 3.973 14 C -0.515 4.515 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.128 4.128 23 C 0.111 3.889 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.259 0.741 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 1.347 14.482 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.208 4.208 4 C -0.079 4.079 5 C -0.216 4.216 6 C -0.186 4.186 7 C 0.313 3.687 8 O -0.430 6.430 9 N -0.334 5.334 10 C -0.041 4.041 11 C -0.157 4.157 12 C -0.098 4.098 13 C -0.010 4.010 14 C -0.554 4.554 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.166 4.166 23 C -0.011 4.011 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.121 1.719 14.753 18.555 hybrid contribution -0.257 -0.620 -0.978 1.187 sum -11.378 1.099 13.775 17.900 Atomic orbital electron populations 1.21931 0.94521 1.02068 1.02017 1.21494 0.96458 0.96914 0.97003 1.21924 1.01480 0.95514 1.01848 1.20783 0.91781 0.97443 0.97910 1.22312 1.01161 0.94775 1.03379 1.21740 1.00577 1.00550 0.95702 1.20503 0.90140 0.77925 0.80114 1.90639 1.64230 1.46250 1.41846 1.48087 1.08202 1.48978 1.28156 1.22684 0.95550 0.97548 0.88336 1.22002 0.97762 1.01627 0.94357 1.21177 0.93402 0.98326 0.96930 1.19129 0.95978 0.96848 0.89023 1.21268 1.21368 1.21009 0.91712 0.92567 1.25022 0.95199 0.95491 0.98742 1.69977 1.31001 1.35459 1.17002 0.86602 0.79463 0.80434 0.81886 1.19755 1.21094 1.21103 1.22006 0.99936 1.00989 0.93712 1.21652 0.79825 1.00673 0.98975 0.92414 0.92353 0.92170 0.88986 0.92169 0.92570 0.92379 0.91272 0.90486 0.92374 0.92378 0.91497 0.92133 0.91711 0.88040 0.92240 0.89786 0.92430 0.96659 0.96637 0.93109 0.92142 0.91280 0.89824 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.45 37.16 0.31 -0.95 16 2 C -0.10 -1.08 1.95 -90.61 -0.18 -1.26 16 3 C -0.15 -1.74 8.50 37.16 0.32 -1.43 16 4 C -0.08 -0.87 0.31 -155.66 -0.05 -0.92 16 5 C -0.16 -1.52 7.34 37.16 0.27 -1.25 16 6 C -0.13 -1.39 7.07 37.16 0.26 -1.13 16 7 C 0.53 7.86 5.51 -10.99 -0.06 7.80 16 8 O -0.55 -10.00 15.41 5.56 0.09 -9.92 16 9 N -0.60 -8.85 2.95 -172.50 -0.51 -9.36 16 10 C 0.08 1.09 4.04 -3.48 -0.01 1.07 16 11 C -0.12 -2.02 5.04 -26.38 -0.13 -2.15 16 12 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 13 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 14 C -0.52 -13.82 8.39 -34.44 -0.29 -14.11 16 15 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.13 -2.19 5.36 -26.61 -0.14 -2.34 16 23 C 0.11 1.70 6.44 -3.71 -0.02 1.67 16 24 H 0.06 0.45 6.69 -51.93 -0.35 0.10 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.46 6.46 -51.93 -0.34 0.12 16 27 H 0.09 1.08 4.78 -51.93 -0.25 0.83 16 28 H 0.06 0.64 6.24 -51.93 -0.32 0.31 16 29 H 0.06 0.78 7.42 -51.93 -0.39 0.40 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.54 6.68 -51.93 -0.35 0.19 16 32 H 0.08 0.72 4.65 -51.92 -0.24 0.48 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 35 H 0.07 0.78 6.08 -51.93 -0.32 0.47 16 36 H 0.06 0.52 6.80 -51.93 -0.35 0.17 16 37 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.10 1.17 2.51 -51.93 -0.13 1.04 16 39 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.08 1.50 6.91 -51.93 -0.36 1.14 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.08 1.33 7.00 -51.93 -0.36 0.97 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -30.59 348.02 -7.92 -38.51 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.32 Total: -0.13 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.13 Total: -14.67 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.23 Total: -35.08 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.59 -7.92 -38.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572123781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.865 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds