Wall clock time and date at job start Tue Mar 31 2020 05:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99558 * 2 1 4 4 H 1.48503 * 109.47038 * 269.99527 * 3 2 1 5 5 H 1.48502 * 109.47260 * 29.99243 * 3 2 1 6 6 H 1.48499 * 109.47238 * 149.99895 * 3 2 1 7 7 C 1.37872 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00120 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00124 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47008 * 180.02562 * 9 7 2 11 11 C 1.53118 * 109.51914 * 175.00144 * 10 9 7 12 12 C 1.53039 * 109.27616 * 177.62274 * 11 10 9 13 13 N 1.46845 * 109.52311 * 300.81597 * 12 11 10 14 14 C 1.46901 * 111.00336 * 185.84120 * 13 12 11 15 15 C 1.52997 * 109.47189 * 75.80746 * 14 13 12 16 16 O 1.42895 * 109.47161 * 65.01870 * 15 14 13 17 17 C 1.42909 * 113.99898 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.46928 * 180.02562 * 17 16 15 19 19 C 1.53789 * 113.61581 * 274.14030 * 18 17 16 20 20 C 1.53959 * 87.01720 * 220.05118 * 19 18 17 21 21 C 1.53775 * 87.11270 * 25.35916 * 20 19 18 22 22 C 1.46846 * 111.19519 * 61.74349 * 13 12 11 23 23 C 1.53032 * 109.52454 * 298.25622 * 22 13 12 24 24 H 0.96994 * 120.00404 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47004 * 60.00191 * 9 7 2 26 26 H 1.09002 * 109.47024 * 300.00147 * 9 7 2 27 27 H 1.08996 * 109.52445 * 54.87172 * 10 9 7 28 28 H 1.09000 * 109.50986 * 57.67997 * 11 10 9 29 29 H 1.09006 * 109.50487 * 297.55954 * 11 10 9 30 30 H 1.09000 * 109.46193 * 180.80495 * 12 11 10 31 31 H 1.08998 * 109.45976 * 60.83134 * 12 11 10 32 32 H 1.09000 * 109.47000 * 315.80581 * 14 13 12 33 33 H 1.09002 * 109.47080 * 195.80508 * 14 13 12 34 34 H 1.08997 * 109.47402 * 185.02723 * 15 14 13 35 35 H 1.08999 * 109.47034 * 305.02409 * 15 14 13 36 36 H 1.08995 * 109.47131 * 300.00521 * 17 16 15 37 37 H 1.09003 * 109.46799 * 60.00952 * 17 16 15 38 38 H 1.08994 * 112.85122 * 45.33627 * 18 17 16 39 39 H 1.09001 * 113.60964 * 334.56662 * 19 18 17 40 40 H 1.08991 * 113.61276 * 105.47038 * 19 18 17 41 41 H 1.08997 * 113.53114 * 270.80842 * 20 19 18 42 42 H 1.08996 * 113.66521 * 139.93162 * 20 19 18 43 43 H 1.09003 * 113.61643 * 220.08681 * 21 20 19 44 44 H 1.09005 * 113.68848 * 89.20221 * 21 20 19 45 45 H 1.09000 * 109.46386 * 58.27474 * 22 13 12 46 46 H 1.09002 * 109.46274 * 178.24442 * 22 13 12 47 47 H 1.08998 * 109.51042 * 299.23871 * 23 22 13 48 48 H 1.09004 * 109.50693 * 179.11722 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5478 -2.6394 -0.1242 12 6 6.0567 -4.0814 -0.0641 13 7 5.6509 -4.6925 1.2080 14 6 6.2389 -6.0299 1.3610 15 6 7.7187 -5.8977 1.7265 16 8 7.8390 -5.2831 3.0109 17 6 9.1883 -5.1125 3.4495 18 6 9.1964 -4.4498 4.8285 19 6 9.1357 -2.9140 4.7744 20 6 10.1542 -2.9133 5.9289 21 6 10.6032 -4.2970 5.4304 22 6 4.1884 -4.7436 1.3298 23 6 3.6236 -3.3214 1.3113 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8753 -0.6802 -0.8888 27 1 3.5862 -3.1767 -0.8395 28 1 5.9813 -2.0660 0.6952 29 1 5.8358 -2.1912 -1.0751 30 1 7.1442 -4.0861 -0.1385 31 1 5.6336 -4.6506 -0.8917 32 1 6.1437 -6.5780 0.4237 33 1 5.7161 -6.5684 2.1515 34 1 8.1763 -6.8866 1.7525 35 1 8.2235 -5.2833 0.9811 36 1 9.6760 -6.0853 3.5114 37 1 9.7240 -4.4819 2.7399 38 1 8.4736 -4.8913 5.5146 39 1 9.5262 -2.4941 3.8474 40 1 8.1631 -2.5056 5.0486 41 1 9.6929 -2.9334 6.9162 42 1 10.9217 -2.1451 5.8348 43 1 10.8137 -5.0033 6.2335 44 1 11.3959 -4.2573 4.6832 45 1 3.7740 -5.3097 0.4956 46 1 3.9187 -5.2292 2.2676 47 1 4.0268 -2.7586 2.1532 48 1 2.5368 -3.3603 1.3859 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573603887.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:08 Heat of formation + Delta-G solvation = -45.730616 kcal Electronic energy + Delta-G solvation = -22593.071988 eV Core-core repulsion = 19454.680756 eV Total energy + Delta-G solvation = -3138.391232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.34251 -38.78741 -37.17552 -34.58060 -32.31222 -30.45634 -30.15326 -28.42681 -27.00522 -25.76242 -23.99522 -22.83712 -22.53465 -21.68224 -20.32724 -19.53710 -18.93115 -16.83145 -16.59063 -16.34192 -15.83192 -15.30020 -14.87311 -14.57158 -14.24606 -14.05689 -13.65220 -13.25846 -13.15170 -12.83905 -12.67402 -12.63776 -12.41014 -12.01603 -11.88063 -11.64128 -11.50364 -11.33301 -11.17376 -10.74953 -10.69745 -10.63339 -10.51575 -10.44658 -10.38312 -10.07235 -9.67123 -9.55570 -9.50466 -9.19102 -8.93639 -8.46505 -7.99693 -5.97677 -3.94196 3.35451 3.42908 3.48103 3.58329 4.10071 4.41483 4.48355 4.51742 4.62193 4.70046 5.00721 5.09310 5.19982 5.24837 5.29067 5.35060 5.36377 5.42442 5.43216 5.49293 5.53345 5.56004 5.63045 5.68449 5.69907 5.75567 5.78627 5.93424 5.95338 6.00148 6.06809 6.12351 6.25121 6.30978 6.41884 6.57355 6.64427 6.93146 7.02876 7.12891 7.20718 7.34157 7.40821 7.46952 7.59231 7.88335 8.62041 9.07772 9.65915 11.15845 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.003594 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.089974 B = 7789.478212 C = 8856.225760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.072 4.072 11 C -0.113 4.113 12 C 0.059 3.941 13 N -0.527 5.527 14 C 0.055 3.945 15 C 0.071 3.929 16 O -0.366 6.366 17 C 0.071 3.929 18 C -0.107 4.107 19 C -0.132 4.132 20 C -0.144 4.144 21 C -0.134 4.134 22 C 0.058 3.942 23 C -0.100 4.100 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.009 0.991 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.026 0.974 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.231 -12.100 7.000 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.091 4.091 11 C -0.151 4.151 12 C -0.069 4.069 13 N -0.252 5.252 14 C -0.073 4.073 15 C -0.007 4.007 16 O -0.284 6.284 17 C -0.006 4.006 18 C -0.125 4.125 19 C -0.169 4.169 20 C -0.181 4.181 21 C -0.171 4.171 22 C -0.069 4.069 23 C -0.138 4.138 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.044 0.956 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 21.088 -11.630 7.490 25.220 hybrid contribution 0.279 0.295 -0.928 1.013 sum 21.367 -11.335 6.562 25.062 Atomic orbital electron populations 1.69919 1.06277 1.26722 1.51718 1.25032 0.94692 0.99107 0.94792 0.86803 0.80468 0.83796 0.78373 1.20479 1.21528 1.18961 1.21167 0.89568 0.94268 1.50032 0.90976 1.19608 0.97019 0.91887 0.96087 1.21040 0.92432 0.98731 0.96885 1.21707 0.97593 0.94576 1.01252 1.22126 0.99165 0.96380 0.89246 1.61869 1.09898 1.19339 1.34077 1.22089 0.94112 0.91040 1.00071 1.22488 0.96830 0.95746 0.85608 1.88031 1.24887 1.81490 1.34041 1.22472 0.84551 0.98425 0.95136 1.22507 0.97726 0.96447 0.95828 1.22949 0.99861 0.95529 0.98566 1.22850 0.99298 0.97117 0.98879 1.22903 0.96276 0.97705 1.00265 1.22193 0.86078 0.98910 0.99748 1.21539 1.00922 0.92976 0.98334 0.92892 0.96541 0.97306 0.92564 0.91607 0.92338 0.91890 0.95493 0.93614 0.90288 0.93752 0.93542 0.94046 0.93670 0.88530 0.90177 0.90984 0.90192 0.91511 0.91445 0.90208 0.95571 0.91461 0.91863 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.32 13.96 55.43 0.77 -27.54 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.51 -14.65 9.00 -34.44 -0.31 -14.96 16 8 H 0.07 2.20 7.32 -52.48 -0.38 1.82 16 9 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 10 C -0.07 -1.46 2.20 -90.50 -0.20 -1.66 16 11 C -0.11 -1.93 5.38 -26.65 -0.14 -2.08 16 12 C 0.06 0.86 5.29 -3.83 -0.02 0.84 16 13 N -0.53 -7.86 4.53 -234.68 -1.06 -8.93 16 14 C 0.06 0.66 5.39 -3.83 -0.02 0.64 16 15 C 0.07 0.78 6.13 37.16 0.23 1.01 16 16 O -0.37 -4.73 10.29 -35.23 -0.36 -5.09 16 17 C 0.07 0.72 5.76 37.16 0.21 0.93 16 18 C -0.11 -1.02 4.00 -89.80 -0.36 -1.38 16 19 C -0.13 -1.31 7.65 -25.82 -0.20 -1.51 16 20 C -0.14 -1.16 8.09 -25.83 -0.21 -1.37 16 21 C -0.13 -1.02 7.64 -25.92 -0.20 -1.21 16 22 C 0.06 0.93 5.43 -3.84 -0.02 0.91 16 23 C -0.10 -1.92 5.15 -26.65 -0.14 -2.06 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 26 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.82 6.65 -51.93 -0.35 0.48 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.50 8.00 -51.93 -0.42 0.08 16 33 H 0.08 0.94 7.79 -51.93 -0.40 0.53 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.51 6.70 -51.93 -0.35 0.16 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 0.44 7.88 -51.93 -0.41 0.03 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 45 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 1.01 7.93 -51.93 -0.41 0.59 16 47 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.08 1.62 7.05 -51.93 -0.37 1.25 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -31.08 367.37 -10.70 -41.78 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -9.35 Total: -2.87 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -1.57 Total: -20.42 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.29 Total: -36.47 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.36 Total: -5.09 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.08 -10.70 -41.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573603887.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.951 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds