Wall clock time and date at job start Tue Mar 31 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99558 * 2 1 4 4 H 1.48503 * 109.47038 * 269.99527 * 3 2 1 5 5 H 1.48502 * 109.47260 * 29.99243 * 3 2 1 6 6 H 1.48499 * 109.47238 * 149.99895 * 3 2 1 7 7 C 1.37872 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00120 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00124 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47008 * 180.02562 * 9 7 2 11 11 C 1.53118 * 109.51914 * 175.00144 * 10 9 7 12 12 C 1.53039 * 109.27616 * 177.62274 * 11 10 9 13 13 N 1.46845 * 109.52311 * 300.81597 * 12 11 10 14 14 C 1.46901 * 111.00336 * 185.84120 * 13 12 11 15 15 C 1.52997 * 109.47189 * 75.80746 * 14 13 12 16 16 O 1.42895 * 109.47161 * 65.01870 * 15 14 13 17 17 C 1.42909 * 113.99898 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.46928 * 180.02562 * 17 16 15 19 19 C 1.53789 * 113.61581 * 274.14030 * 18 17 16 20 20 C 1.53959 * 87.01720 * 220.05118 * 19 18 17 21 21 C 1.53775 * 87.11270 * 25.35916 * 20 19 18 22 22 C 1.46846 * 111.19519 * 61.74349 * 13 12 11 23 23 C 1.53032 * 109.52454 * 298.25622 * 22 13 12 24 24 H 0.96994 * 120.00404 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47004 * 60.00191 * 9 7 2 26 26 H 1.09002 * 109.47024 * 300.00147 * 9 7 2 27 27 H 1.08996 * 109.52445 * 54.87172 * 10 9 7 28 28 H 1.09000 * 109.50986 * 57.67997 * 11 10 9 29 29 H 1.09006 * 109.50487 * 297.55954 * 11 10 9 30 30 H 1.09000 * 109.46193 * 180.80495 * 12 11 10 31 31 H 1.08998 * 109.45976 * 60.83134 * 12 11 10 32 32 H 1.09000 * 109.47000 * 315.80581 * 14 13 12 33 33 H 1.09002 * 109.47080 * 195.80508 * 14 13 12 34 34 H 1.08997 * 109.47402 * 185.02723 * 15 14 13 35 35 H 1.08999 * 109.47034 * 305.02409 * 15 14 13 36 36 H 1.08995 * 109.47131 * 300.00521 * 17 16 15 37 37 H 1.09003 * 109.46799 * 60.00952 * 17 16 15 38 38 H 1.08994 * 112.85122 * 45.33627 * 18 17 16 39 39 H 1.09001 * 113.60964 * 334.56662 * 19 18 17 40 40 H 1.08991 * 113.61276 * 105.47038 * 19 18 17 41 41 H 1.08997 * 113.53114 * 270.80842 * 20 19 18 42 42 H 1.08996 * 113.66521 * 139.93162 * 20 19 18 43 43 H 1.09003 * 113.61643 * 220.08681 * 21 20 19 44 44 H 1.09005 * 113.68848 * 89.20221 * 21 20 19 45 45 H 1.09000 * 109.46386 * 58.27474 * 22 13 12 46 46 H 1.09002 * 109.46274 * 178.24442 * 22 13 12 47 47 H 1.08998 * 109.51042 * 299.23871 * 23 22 13 48 48 H 1.09004 * 109.50693 * 179.11722 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5478 -2.6394 -0.1242 12 6 6.0567 -4.0814 -0.0641 13 7 5.6509 -4.6925 1.2080 14 6 6.2389 -6.0299 1.3610 15 6 7.7187 -5.8977 1.7265 16 8 7.8390 -5.2831 3.0109 17 6 9.1883 -5.1125 3.4495 18 6 9.1964 -4.4498 4.8285 19 6 9.1357 -2.9140 4.7744 20 6 10.1542 -2.9133 5.9289 21 6 10.6032 -4.2970 5.4304 22 6 4.1884 -4.7436 1.3298 23 6 3.6236 -3.3214 1.3113 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8753 -0.6802 -0.8888 27 1 3.5862 -3.1767 -0.8395 28 1 5.9813 -2.0660 0.6952 29 1 5.8358 -2.1912 -1.0751 30 1 7.1442 -4.0861 -0.1385 31 1 5.6336 -4.6506 -0.8917 32 1 6.1437 -6.5780 0.4237 33 1 5.7161 -6.5684 2.1515 34 1 8.1763 -6.8866 1.7525 35 1 8.2235 -5.2833 0.9811 36 1 9.6760 -6.0853 3.5114 37 1 9.7240 -4.4819 2.7399 38 1 8.4736 -4.8913 5.5146 39 1 9.5262 -2.4941 3.8474 40 1 8.1631 -2.5056 5.0486 41 1 9.6929 -2.9334 6.9162 42 1 10.9217 -2.1451 5.8348 43 1 10.8137 -5.0033 6.2335 44 1 11.3959 -4.2573 4.6832 45 1 3.7740 -5.3097 0.4956 46 1 3.9187 -5.2292 2.2676 47 1 4.0268 -2.7586 2.1532 48 1 2.5368 -3.3603 1.3859 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573603887.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:07 Heat of formation + Delta-G solvation = -63.954470 kcal Electronic energy + Delta-G solvation = -22593.862234 eV Core-core repulsion = 19454.680756 eV Total energy + Delta-G solvation = -3139.181478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.28181 -39.83531 -38.10057 -36.12694 -34.33443 -31.77258 -31.50706 -29.62492 -28.25131 -26.44385 -25.57955 -23.95660 -23.52875 -22.98342 -21.78862 -20.47768 -20.23219 -18.86597 -17.60413 -17.28835 -16.70869 -16.34681 -16.12172 -15.82035 -15.67001 -15.23237 -15.13700 -14.76660 -14.46762 -14.04454 -14.01475 -13.79999 -13.33140 -13.30489 -13.12327 -12.96512 -12.68325 -12.61404 -12.38865 -12.23873 -12.06710 -11.97651 -11.74719 -11.64552 -11.39364 -11.23899 -11.17140 -11.08892 -10.94688 -10.76748 -10.70720 -10.34671 -9.13291 -8.26611 -6.28603 1.34578 1.37037 1.49274 2.37515 2.80907 2.99610 3.08852 3.73148 3.81261 3.88672 3.98694 4.01124 4.03469 4.04514 4.24397 4.33329 4.40478 4.47417 4.48961 4.56040 4.58720 4.64519 4.67781 4.71928 4.78152 4.81766 4.86920 4.89562 4.94084 4.96561 5.00714 5.06482 5.10046 5.13324 5.16954 5.23538 5.33951 5.38365 5.41596 5.51559 5.61844 5.72173 5.75037 6.21156 6.24644 6.34254 6.51612 6.78394 7.35116 8.90172 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.003594 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.089974 B = 7789.478212 C = 8856.225760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.251 1.251 7 C -0.518 4.518 8 H 0.034 0.966 9 C -0.005 4.005 10 C -0.070 4.070 11 C -0.107 4.107 12 C 0.064 3.936 13 N -0.540 5.540 14 C 0.054 3.946 15 C 0.071 3.929 16 O -0.395 6.395 17 C 0.070 3.930 18 C -0.112 4.112 19 C -0.141 4.141 20 C -0.140 4.140 21 C -0.122 4.122 22 C 0.069 3.931 23 C -0.095 4.095 24 H 0.264 0.736 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.033 0.967 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.029 0.971 46 H 0.076 0.924 47 H 0.051 0.949 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.514 -12.585 6.889 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.174 1.174 7 C -0.556 4.556 8 H 0.053 0.947 9 C -0.043 4.043 10 C -0.088 4.088 11 C -0.145 4.145 12 C -0.064 4.064 13 N -0.265 5.265 14 C -0.073 4.073 15 C -0.006 4.006 16 O -0.315 6.315 17 C -0.007 4.007 18 C -0.130 4.130 19 C -0.179 4.179 20 C -0.178 4.178 21 C -0.159 4.159 22 C -0.059 4.059 23 C -0.133 4.133 24 H 0.073 0.927 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.047 0.953 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 24.394 -12.136 7.377 28.227 hybrid contribution -0.818 0.383 -0.879 1.261 sum 23.575 -11.754 6.498 27.132 Atomic orbital electron populations 1.70071 1.08194 1.27930 1.53322 1.25991 0.95576 1.03369 0.94516 0.85699 0.79445 0.78628 0.79126 1.19129 1.21070 1.17422 1.21469 0.91960 0.92934 1.49261 0.94727 1.19565 0.94002 0.94785 0.95914 1.20958 0.95050 0.95991 0.96834 1.21618 0.94491 0.96706 1.01648 1.22085 1.00455 0.94512 0.89337 1.61834 1.08736 1.21546 1.34399 1.22187 0.94715 0.89436 1.00983 1.22554 0.96012 0.97023 0.85025 1.87997 1.26570 1.81957 1.34929 1.22582 0.83588 0.99368 0.95133 1.22540 0.98928 0.95774 0.95783 1.22991 0.99438 0.96082 0.99383 1.22850 0.98822 0.97910 0.98185 1.22865 0.95185 0.97325 1.00570 1.21993 0.87257 0.96243 1.00409 1.21406 0.99080 0.95363 0.97481 0.92677 0.96879 0.96695 0.93587 0.92294 0.91077 0.89538 0.94899 0.91818 0.90349 0.91298 0.93221 0.92415 0.93350 0.89652 0.90394 0.93066 0.89992 0.90638 0.90312 0.89100 0.95259 0.90588 0.93045 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 2 C 0.00 0.09 5.47 84.65 0.46 0.55 16 3 Si 0.95 45.86 27.47 68.60 1.88 47.74 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 7 C -0.52 -30.59 9.00 25.60 0.23 -30.36 16 8 H 0.03 2.24 7.32 -2.91 -0.02 2.21 16 9 C -0.01 -0.26 3.52 29.85 0.11 -0.15 16 10 C -0.07 -2.82 2.20 -10.71 -0.02 -2.85 16 11 C -0.11 -3.46 5.38 30.65 0.16 -3.30 16 12 C 0.06 1.70 5.29 86.33 0.46 2.16 16 13 N -0.54 -15.10 4.53 -896.38 -4.06 -19.16 16 14 C 0.05 1.16 5.39 86.30 0.47 1.63 16 15 C 0.07 1.35 6.13 71.98 0.44 1.79 16 16 O -0.39 -9.45 10.29 -148.98 -1.53 -10.98 16 17 C 0.07 1.26 5.76 71.98 0.41 1.68 16 18 C -0.11 -2.00 4.00 -10.27 -0.04 -2.04 16 19 C -0.14 -2.74 7.65 31.18 0.24 -2.50 16 20 C -0.14 -2.05 8.09 31.18 0.25 -1.80 16 21 C -0.12 -1.57 7.64 31.12 0.24 -1.33 16 22 C 0.07 2.16 5.43 86.32 0.47 2.62 16 23 C -0.10 -3.77 5.15 30.65 0.16 -3.61 16 24 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 25 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 26 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.09 1.95 6.65 -2.39 -0.02 1.93 16 31 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.16 8.00 -2.39 -0.02 1.14 16 33 H 0.08 1.69 7.79 -2.39 -0.02 1.67 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.91 6.70 -2.39 -0.02 0.89 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.05 0.83 7.88 -2.39 -0.02 0.82 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 1.51 7.92 -2.39 -0.02 1.49 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 44 H 0.09 0.99 8.10 -2.38 -0.02 0.97 16 45 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 2.23 7.93 -2.39 -0.02 2.21 16 47 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.04 2.04 7.05 -2.38 -0.02 2.02 16 Total: -1.00 -68.45 367.37 1.44 -67.00 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.82 Total: 13.90 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 4.03 Total: -37.50 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -3.76 Total: -80.16 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.53 Total: -10.98 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.74 kcal Total: -68.45 1.44 -67.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573603887.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.050 kcal (2) G-P(sol) polarization free energy of solvation -68.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds