Wall clock time and date at job start Tue Mar 31 2020 05:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00194 * 2 1 4 4 C 1.50700 * 109.47194 * 293.95472 * 3 2 1 5 5 H 1.08003 * 119.99861 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00012 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00226 * 0.02562 * 6 4 3 8 8 Si 1.86809 * 119.99909 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47133 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47039 * 120.00459 * 8 6 4 11 11 H 1.48499 * 109.47228 * 240.00259 * 8 6 4 12 12 C 1.46893 * 111.00237 * 123.95687 * 2 1 3 13 13 C 1.53000 * 109.47397 * 164.00720 * 12 2 1 14 14 H 1.09003 * 109.46989 * 58.50996 * 13 12 2 15 15 O 1.42898 * 109.46959 * 298.50724 * 13 12 2 16 16 C 1.52999 * 109.47181 * 178.50810 * 13 12 2 17 17 N 1.46904 * 109.47256 * 185.00040 * 16 13 12 18 18 C 1.46894 * 111.00033 * 180.02562 * 17 16 13 19 19 C 1.53002 * 109.46814 * 180.02562 * 18 17 16 20 20 N 1.46505 * 109.47005 * 179.97438 * 19 18 17 21 21 C 1.36335 * 125.63715 * 269.69379 * 20 19 18 22 22 C 1.34857 * 108.21878 * 179.83107 * 21 20 19 23 23 C 1.40884 * 107.41651 * 0.42297 * 22 21 20 24 24 C 1.34849 * 107.41944 * 359.73660 * 23 22 21 25 25 H 1.09001 * 109.46689 * 301.53086 * 1 2 3 26 26 H 1.09003 * 109.47372 * 61.52701 * 1 2 3 27 27 H 1.08994 * 109.47183 * 181.53124 * 1 2 3 28 28 H 1.08995 * 109.47411 * 53.95384 * 3 2 1 29 29 H 1.09005 * 109.47225 * 173.95991 * 3 2 1 30 30 H 0.96997 * 120.00105 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47474 * 44.00447 * 12 2 1 32 32 H 1.09003 * 109.47152 * 284.00659 * 12 2 1 33 33 H 0.96701 * 114.00526 * 299.99926 * 15 13 12 34 34 H 1.09004 * 109.46957 * 64.99896 * 16 13 12 35 35 H 1.09000 * 109.47043 * 305.00128 * 16 13 12 36 36 H 1.00898 * 110.99579 * 56.04487 * 17 16 13 37 37 H 1.09002 * 109.47085 * 299.99743 * 18 17 16 38 38 H 1.09001 * 109.47299 * 59.99898 * 18 17 16 39 39 H 1.08996 * 109.47394 * 299.99442 * 19 18 17 40 40 H 1.08991 * 109.47368 * 59.99884 * 19 18 17 41 41 H 1.08003 * 125.88923 * 359.95923 * 21 20 19 42 42 H 1.08005 * 126.28725 * 180.16485 * 22 21 20 43 43 H 1.08004 * 126.29379 * 179.73958 * 23 22 21 44 44 H 1.08001 * 125.89629 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0269 3.3494 -1.5284 7 7 2.7121 4.0019 -0.6149 8 14 1.5818 4.1873 -3.1377 9 1 0.8136 3.2450 -3.9905 10 1 0.7544 5.3883 -2.8582 11 1 2.8232 4.5948 -3.8435 12 6 1.9955 -0.7660 1.1375 13 6 3.4728 -1.0840 0.8982 14 1 4.0282 -0.1550 0.7696 15 8 3.6033 -1.8839 -0.2787 16 6 4.0308 -1.8496 2.0997 17 7 5.4754 -2.0503 1.9245 18 6 6.0466 -2.7844 3.0615 19 6 7.5493 -2.9731 2.8436 20 7 8.1191 -3.7046 3.9778 21 6 8.6292 -3.1424 5.1102 22 6 9.0530 -4.1344 5.9195 23 6 8.8040 -5.3533 5.2584 24 6 8.2322 -5.0601 4.0728 25 1 -0.3633 0.5374 0.8760 26 1 -0.3634 0.4899 -0.9034 27 1 -0.3633 -1.0272 0.0275 28 1 1.5612 1.9274 0.8309 29 1 3.0798 1.3444 0.1081 30 1 2.9867 4.9179 -0.7769 31 1 1.4356 -1.6957 1.2398 32 1 1.8935 -0.1782 2.0497 33 1 3.1332 -2.7279 -0.2348 34 1 3.5359 -2.8179 2.1752 35 1 3.8512 -1.2778 3.0101 36 1 5.9488 -1.1699 1.7875 37 1 5.8810 -2.2194 3.9788 38 1 5.5657 -3.7591 3.1432 39 1 7.7153 -3.5378 1.9262 40 1 8.0298 -1.9983 2.7621 41 1 8.6826 -2.0850 5.3234 42 1 9.5044 -4.0160 6.8935 43 1 9.0295 -6.3412 5.6323 44 1 7.9177 -5.7755 3.3273 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579103705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:46 Heat of formation + Delta-G solvation = 8.819537 kcal Electronic energy + Delta-G solvation = -21457.867300 eV Core-core repulsion = 18218.301196 eV Total energy + Delta-G solvation = -3239.566104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27633 -38.28788 -36.41885 -35.21380 -33.00792 -32.48930 -30.03669 -28.94533 -27.88449 -27.24742 -25.22679 -23.49090 -22.58664 -21.63517 -20.63541 -20.11317 -20.02334 -17.60690 -16.65211 -16.51950 -15.68728 -15.41649 -15.11090 -14.67255 -14.46850 -14.42823 -14.08013 -13.69225 -13.47379 -13.31202 -13.02106 -12.79673 -12.46456 -12.24360 -12.12271 -11.95072 -11.89148 -11.51712 -11.38446 -11.17227 -10.95087 -10.74374 -10.63631 -10.37542 -9.77849 -9.56100 -9.14183 -8.79924 -8.62074 -8.43232 -8.33673 -7.22768 -6.03215 -4.03357 2.09509 2.69196 2.89127 3.31347 3.38689 3.44109 3.96390 4.40256 4.43571 4.62378 4.74899 4.86891 4.91014 5.01951 5.04689 5.18715 5.24471 5.32093 5.37770 5.45048 5.52042 5.52985 5.57021 5.64665 5.69307 6.00382 6.07417 6.10918 6.14521 6.31364 6.43639 6.68607 6.73077 6.81815 7.05794 7.11465 7.22039 7.25158 7.29006 7.79762 8.06616 8.14937 8.22815 8.54558 9.04195 9.60681 11.08047 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027342 B = 0.002597 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.828085 B =10779.426923 C =11307.561947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.026 3.974 13 C 0.118 3.882 14 H 0.102 0.898 15 O -0.531 6.531 16 C 0.030 3.970 17 N -0.677 5.677 18 C 0.046 3.954 19 C 0.105 3.895 20 N -0.445 5.445 21 C -0.017 4.017 22 C -0.205 4.205 23 C -0.206 4.206 24 C -0.014 4.014 25 H 0.010 0.990 26 H 0.074 0.926 27 H 0.043 0.957 28 H -0.012 1.012 29 H 0.031 0.969 30 H 0.260 0.740 31 H 0.061 0.939 32 H 0.029 0.971 33 H 0.361 0.639 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.346 0.654 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.158 0.842 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.999 -15.857 10.911 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.058 3.942 14 H 0.120 0.880 15 O -0.333 6.333 16 C -0.100 4.100 17 N -0.309 5.309 18 C -0.085 4.085 19 C -0.017 4.017 20 N -0.121 5.121 21 C -0.147 4.147 22 C -0.230 4.230 23 C -0.231 4.231 24 C -0.144 4.144 25 H 0.028 0.972 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.006 0.994 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.206 0.794 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.164 0.836 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.176 0.824 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.370 -15.764 9.625 20.278 hybrid contribution -0.842 1.279 1.024 1.842 sum 7.529 -14.486 10.648 19.491 Atomic orbital electron populations 1.22198 0.88805 0.98914 1.00947 1.62033 1.06546 1.17828 1.39086 1.19785 0.95456 0.81485 0.96590 1.21192 1.34464 0.96762 1.01666 0.91799 1.24991 0.95354 0.97384 0.97014 1.69960 1.38680 1.11398 1.34077 0.86439 0.78168 0.79232 0.83575 1.19633 1.21198 1.20979 1.22675 0.95867 0.98258 0.93615 1.21873 0.94650 0.94000 0.83703 0.88046 1.86690 1.75410 1.33143 1.38066 1.22733 0.88149 1.00671 0.98424 1.60277 1.03721 1.26436 1.40424 1.22268 0.93670 0.99924 0.92604 1.21810 0.93705 0.98072 0.88097 1.44135 1.46439 1.06241 1.15291 1.21865 1.05730 0.98928 0.88147 1.20898 1.08748 0.92464 1.00855 1.20897 1.07849 0.98364 0.95952 1.21872 1.07897 0.83840 1.00769 0.97181 0.90741 0.93841 0.99443 0.95107 0.93042 0.92070 0.95314 0.79396 0.90823 0.94457 0.83560 0.94779 0.90477 0.88166 0.89264 0.82409 0.84936 0.84918 0.82272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.32 60.06 0.56 1.33 16 2 N -0.53 -11.37 4.60 -244.37 -1.12 -12.49 16 3 C 0.19 4.98 4.57 -4.98 -0.02 4.96 16 4 C -0.50 -14.24 8.54 -34.44 -0.29 -14.53 16 5 H 0.06 1.81 7.10 -52.48 -0.37 1.44 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.03 0.43 4.63 -3.83 -0.02 0.42 16 13 C 0.12 1.85 3.17 -26.73 -0.08 1.77 16 14 H 0.10 1.89 6.55 -51.93 -0.34 1.55 16 15 O -0.53 -8.89 13.18 -35.23 -0.46 -9.35 16 16 C 0.03 0.36 5.32 -3.82 -0.02 0.34 16 17 N -0.68 -7.49 6.45 -113.78 -0.73 -8.22 16 18 C 0.05 0.42 6.01 -3.83 -0.02 0.40 16 19 C 0.11 0.88 6.35 -4.04 -0.03 0.85 16 20 N -0.45 -4.27 2.75 -117.12 -0.32 -4.59 16 21 C -0.02 -0.16 11.43 -16.75 -0.19 -0.36 16 22 C -0.20 -2.06 10.86 -39.78 -0.43 -2.49 16 23 C -0.21 -2.05 10.86 -39.78 -0.43 -2.48 16 24 C -0.01 -0.13 11.43 -16.75 -0.19 -0.32 16 25 H 0.01 0.19 8.13 -51.93 -0.42 -0.24 16 26 H 0.07 1.54 6.90 -51.93 -0.36 1.18 16 27 H 0.04 0.70 7.97 -51.93 -0.41 0.29 16 28 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 29 H 0.03 0.85 6.38 -51.93 -0.33 0.52 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 32 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 33 H 0.36 4.66 9.05 45.56 0.41 5.08 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.35 3.83 8.73 -39.29 -0.34 3.49 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 43 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 44 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -32.35 363.32 -9.51 -41.86 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.78 Total: 5.23 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -1.27 Total: -8.68 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -1.44 Total: -51.34 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.46 Total: -9.35 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.35 -9.51 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579103705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.679 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds