Wall clock time and date at job start Tue Mar 31 2020 05:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48503 * 109.47170 * 269.99738 * 3 2 1 5 5 H 1.48506 * 109.47159 * 29.99426 * 3 2 1 6 6 H 1.48501 * 109.47445 * 149.99557 * 3 2 1 7 7 C 1.37878 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47308 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47258 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47258 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47308 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00146 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00406 * 179.97438 * 13 12 11 16 16 C 1.46490 * 120.00363 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47266 * 180.02562 * 16 15 13 18 18 C 1.53003 * 109.47400 * 179.97438 * 17 16 15 19 19 C 1.52994 * 109.47126 * 180.02562 * 18 17 16 20 20 C 1.54961 * 110.92578 * 71.54077 * 19 18 17 21 21 C 1.54270 * 104.16191 * 156.29427 * 20 19 18 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 0.96996 * 120.00016 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46453 * 60.00309 * 9 7 2 26 26 H 1.08991 * 109.47341 * 300.00325 * 9 7 2 27 27 H 1.08999 * 109.46784 * 60.00015 * 10 9 7 28 28 H 1.09000 * 109.46864 * 300.00272 * 10 9 7 29 29 H 1.08999 * 109.47591 * 60.00043 * 11 10 9 30 30 H 1.09000 * 109.47025 * 299.99708 * 11 10 9 31 31 H 1.09001 * 109.47169 * 60.00211 * 12 11 10 32 32 H 1.09000 * 109.46864 * 299.99807 * 12 11 10 33 33 H 0.97007 * 119.99391 * 0.02562 * 15 13 12 34 34 H 1.08999 * 109.47504 * 60.00267 * 16 15 13 35 35 H 1.09000 * 109.47105 * 299.99936 * 16 15 13 36 36 H 1.09001 * 109.47169 * 60.00313 * 17 16 15 37 37 H 1.09000 * 109.46864 * 299.99909 * 17 16 15 38 38 H 1.08995 * 109.46922 * 59.99869 * 18 17 16 39 39 H 1.09000 * 109.47141 * 299.99866 * 18 17 16 40 40 H 1.09001 * 110.67554 * 308.23161 * 19 18 17 41 41 H 1.08997 * 110.47708 * 37.64024 * 20 19 18 42 42 H 1.09002 * 110.53308 * 274.97416 * 20 19 18 43 43 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 44 44 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 45 45 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 46 46 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 47 47 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 48 48 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1499 0.0018 13 6 1.7212 -7.4551 0.0018 14 8 0.5084 -7.4551 0.0009 15 7 2.3951 -8.6223 0.0018 16 6 1.6627 -9.8910 0.0013 17 6 2.6569 -11.0539 0.0020 18 6 1.8920 -12.3790 0.0021 19 6 2.8862 -13.5418 0.0035 20 6 3.5931 -13.6639 1.3771 21 6 4.0456 -15.1375 1.4390 22 6 3.1266 -15.9210 0.4857 23 6 2.1464 -14.8968 -0.1227 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5570 -0.8898 26 1 0.6241 -2.5567 0.8902 27 1 2.8713 -3.6039 0.8923 28 1 2.8727 -3.6046 -0.8877 29 1 0.8548 -5.0450 -0.8895 30 1 0.8528 -5.0446 0.8905 31 1 3.1007 -6.0923 0.8923 32 1 3.1019 -6.0921 -0.8877 33 1 3.3652 -8.6222 0.0022 34 1 1.0364 -9.9486 -0.8890 35 1 1.0357 -9.9489 0.8910 36 1 3.2829 -10.9962 0.8925 37 1 3.2842 -10.9961 -0.8875 38 1 1.2657 -12.4370 -0.8881 39 1 1.2650 -12.4365 0.8918 40 1 3.6167 -13.4246 -0.7970 41 1 2.8958 -13.4447 2.1856 42 1 4.4548 -12.9980 1.4242 43 1 3.9409 -15.5178 2.4552 44 1 5.0822 -15.2237 1.1133 45 1 3.7170 -16.3869 -0.3033 46 1 2.5764 -16.6823 1.0389 47 1 1.9526 -15.1295 -1.1697 48 1 1.2143 -14.8788 0.4420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588149423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:25 Heat of formation + Delta-G solvation = -102.586488 kcal Electronic energy + Delta-G solvation = -20803.733793 eV Core-core repulsion = 17662.877105 eV Total energy + Delta-G solvation = -3140.856688 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.67486 -38.87304 -35.89421 -34.79512 -33.20647 -32.55673 -30.06087 -29.18322 -28.82382 -25.93966 -24.60858 -22.39031 -21.89071 -20.60777 -20.45491 -20.01224 -19.88598 -16.72984 -16.42676 -16.24017 -16.01686 -15.92545 -15.28266 -15.12864 -14.42099 -14.17540 -13.81875 -13.67864 -13.50308 -13.03480 -12.65976 -12.55468 -12.14680 -11.94751 -11.74614 -11.65350 -11.57079 -11.50215 -11.34920 -11.00222 -10.97716 -10.95739 -10.84724 -10.78542 -10.50525 -10.47757 -10.37488 -9.75529 -9.57882 -9.18602 -9.11687 -8.95060 -8.28088 -5.92835 -3.95313 2.78620 3.17180 3.35635 3.41566 3.44856 4.10092 4.17760 4.25864 4.50938 4.60319 4.63290 4.78605 4.95967 4.98853 5.04772 5.12839 5.20263 5.24450 5.26907 5.34181 5.37929 5.40059 5.42196 5.43830 5.53026 5.57680 5.60629 5.67715 5.75561 5.81742 5.86581 5.92904 5.95893 6.04062 6.18074 6.34335 6.38302 6.59029 6.88029 7.06112 7.23535 7.48930 7.76939 7.93337 8.08844 8.32357 8.50656 9.12445 9.68193 11.18474 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.063825 B = 0.001746 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.597175 B =16032.825507 C =16306.198569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.510 3.490 14 O -0.537 6.537 15 N -0.740 5.740 16 C 0.117 3.883 17 C -0.130 4.130 18 C -0.109 4.109 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.122 4.122 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.399 0.601 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.116 -32.391 0.771 33.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.412 6.412 15 N -0.394 5.394 16 C -0.006 4.006 17 C -0.168 4.168 18 C -0.147 4.147 19 C -0.111 4.111 20 C -0.159 4.159 21 C -0.164 4.164 22 C -0.164 4.164 23 C -0.159 4.159 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.062 -32.277 0.780 33.278 hybrid contribution 0.955 0.865 -0.005 1.289 sum 9.017 -31.412 0.775 32.690 Atomic orbital electron populations 1.69973 1.06044 1.26474 1.50953 1.25040 0.94836 0.99209 0.95477 0.86612 0.79819 0.83616 0.78029 1.20724 1.21263 1.19939 1.21293 0.92990 0.91226 1.50377 0.92756 1.19102 0.94085 0.91280 0.97329 1.21649 0.99072 0.94034 1.00047 1.21448 0.97039 0.92724 1.02939 1.21791 1.00075 0.92084 1.03917 1.21111 0.88458 0.85651 0.75026 1.90704 1.14296 1.87729 1.48515 1.46118 1.10220 1.05826 1.77193 1.21323 0.94747 0.82296 1.02279 1.21810 0.98393 0.93828 1.02765 1.21501 0.97736 0.92825 1.02634 1.22164 0.97130 0.94102 0.97687 1.22466 1.00079 0.96120 0.97187 1.22138 0.99309 0.95444 0.99534 1.22128 0.97544 0.98006 0.98678 1.22424 0.98406 0.94341 1.00764 0.93067 0.96580 0.96574 0.93485 0.93497 0.91834 0.91828 0.89200 0.89190 0.76730 0.91733 0.91743 0.91209 0.91336 0.91515 0.91484 0.90608 0.91490 0.91695 0.92008 0.92011 0.92020 0.92012 0.91756 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.32 5.15 -26.74 -0.14 -2.46 16 11 C -0.10 -1.90 4.50 -26.74 -0.12 -2.02 16 12 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 13 C 0.51 7.32 7.83 -10.98 -0.09 7.24 16 14 O -0.54 -10.13 15.98 5.56 0.09 -10.04 16 15 N -0.74 -7.54 5.56 -60.30 -0.33 -7.87 16 16 C 0.12 1.09 5.67 -4.05 -0.02 1.07 16 17 C -0.13 -0.80 5.22 -26.73 -0.14 -0.94 16 18 C -0.11 -0.63 4.72 -26.73 -0.13 -0.76 16 19 C -0.09 -0.50 2.86 -88.59 -0.25 -0.75 16 20 C -0.12 -0.65 5.71 -25.03 -0.14 -0.80 16 21 C -0.13 -0.66 6.80 -25.61 -0.17 -0.83 16 22 C -0.13 -0.65 6.80 -25.62 -0.17 -0.82 16 23 C -0.12 -0.65 6.27 -25.07 -0.16 -0.81 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.40 2.84 8.47 -40.82 -0.35 2.50 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.40 7.66 -51.93 -0.40 0.00 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.41 8.00 -51.93 -0.42 -0.01 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.38 7.95 -51.93 -0.41 -0.03 16 42 H 0.06 0.34 8.10 -51.93 -0.42 -0.08 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.37 8.05 -51.93 -0.42 -0.05 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -33.79 383.22 -10.56 -44.35 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -9.56 Total: -4.73 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -2.24 Total: -17.52 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.40 Total: -34.88 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.79 -10.56 -44.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588149423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.237 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds