Wall clock time and date at job start Tue Mar 31 2020 05:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99862 * 2 1 4 4 H 1.48501 * 109.47313 * 239.99737 * 3 2 1 5 5 H 1.48495 * 109.47528 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47011 * 119.99815 * 3 2 1 7 7 C 1.37874 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99773 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99999 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.46983 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46897 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47149 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99966 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00093 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00234 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47480 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47469 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.46817 * 64.99892 * 18 17 16 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99697 * 18 17 16 24 24 H 0.97002 * 120.00116 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46850 * 60.00129 * 9 7 2 26 26 H 1.09007 * 109.46903 * 299.99800 * 9 7 2 27 27 H 1.08999 * 109.47123 * 59.99724 * 10 9 7 28 28 H 1.09007 * 109.46339 * 299.99965 * 10 9 7 29 29 H 1.08999 * 109.47318 * 59.99964 * 11 10 9 30 30 H 1.08996 * 109.47665 * 299.99788 * 11 10 9 31 31 H 1.09008 * 109.46996 * 60.00166 * 12 11 10 32 32 H 1.08997 * 109.47507 * 300.00120 * 12 11 10 33 33 H 0.96996 * 120.00407 * 359.97438 * 15 13 12 34 34 H 1.08997 * 109.47622 * 59.99100 * 16 15 13 35 35 H 1.09006 * 109.47216 * 299.99688 * 16 15 13 36 36 H 1.09008 * 109.47149 * 59.99636 * 17 16 15 37 37 H 1.08997 * 109.47163 * 299.99707 * 17 16 15 38 38 H 1.09002 * 109.47070 * 305.00072 * 18 17 16 39 39 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 40 40 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 41 41 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 43 43 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 44 44 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 45 45 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 46 46 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 47 47 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 48 48 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9870 0.0001 12 6 2.4745 -6.1499 -0.0005 13 6 1.7210 -7.4550 -0.0005 14 8 0.5082 -7.4550 -0.0005 15 7 2.3949 -8.6222 -0.0005 16 6 1.6624 -9.8909 -0.0011 17 6 2.6566 -11.0539 -0.0016 18 6 1.8917 -12.3789 -0.0016 19 6 1.1083 -12.5155 -1.3087 20 6 0.3438 -13.8408 -1.3090 21 6 1.3338 -15.0007 -1.1840 22 6 2.1172 -14.8641 0.1231 23 6 2.8812 -13.5391 0.1236 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6247 -2.5570 0.8898 27 1 2.8720 -3.6043 0.8894 28 1 2.8719 -3.6042 -0.8906 29 1 0.8533 -5.0450 -0.8896 30 1 0.8539 -5.0446 0.8903 31 1 3.1018 -6.0921 0.8891 32 1 3.1006 -6.0923 -0.8909 33 1 3.3649 -8.6223 -0.0009 34 1 1.0360 -9.9485 -0.8912 35 1 1.0354 -9.9489 0.8887 36 1 3.2834 -10.9965 0.8884 37 1 3.2832 -10.9958 -0.8916 38 1 1.1998 -12.3990 0.8405 39 1 0.4033 -11.6890 -1.3980 40 1 1.8002 -12.4955 -2.1507 41 1 -0.2140 -13.9384 -2.2404 42 1 -0.3480 -13.8613 -0.4669 43 1 2.0256 -14.9802 -2.0261 44 1 0.7890 -15.9449 -1.1838 45 1 2.8220 -15.6907 0.2123 46 1 1.4253 -14.8846 0.9651 47 1 3.5730 -13.5191 -0.7184 48 1 3.4393 -13.4418 1.0548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588149819.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:06 Heat of formation + Delta-G solvation = -105.032373 kcal Electronic energy + Delta-G solvation = -21184.273772 eV Core-core repulsion = 18043.311022 eV Total energy + Delta-G solvation = -3140.962750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.79856 -39.04887 -35.61353 -34.76803 -32.90811 -32.51591 -31.16637 -29.89373 -28.23558 -25.61656 -23.91764 -22.91823 -22.05540 -21.26781 -20.28062 -19.98538 -19.87408 -16.71739 -16.33919 -16.08977 -15.97288 -15.46592 -15.18685 -14.55853 -14.41848 -14.39556 -14.26214 -13.68128 -13.51669 -12.97970 -12.61334 -12.51470 -12.38440 -12.18017 -11.93241 -11.64446 -11.60579 -11.55396 -11.50155 -11.21993 -10.94196 -10.84421 -10.51578 -10.49893 -10.48784 -10.37204 -10.33841 -9.74698 -9.57606 -9.18481 -9.09755 -8.95825 -8.27735 -5.92566 -3.95133 2.78883 3.17489 3.37008 3.41285 3.43587 4.23706 4.25700 4.35382 4.51026 4.61814 4.69649 4.87862 4.94950 5.00368 5.04096 5.08697 5.13472 5.20596 5.27898 5.35468 5.38147 5.41128 5.43031 5.52543 5.59821 5.64775 5.74240 5.74540 5.81614 5.81906 5.89294 5.92729 5.99864 6.10471 6.18129 6.34505 6.38793 6.59075 6.88086 7.06159 7.23543 7.49275 7.76741 7.93414 8.08985 8.32649 8.50722 9.12385 9.68249 11.18687 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.061994 B = 0.001892 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.545781 B =14796.245096 C =15065.084505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.510 3.490 14 O -0.537 6.537 15 N -0.740 5.740 16 C 0.117 3.883 17 C -0.127 4.127 18 C -0.083 4.083 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.113 4.113 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.399 0.601 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.216 -31.639 -0.882 32.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.412 6.412 15 N -0.394 5.394 16 C -0.007 4.007 17 C -0.165 4.165 18 C -0.102 4.102 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.151 4.151 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.232 0.768 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.156 -31.516 -0.882 32.124 hybrid contribution 0.949 0.896 0.003 1.305 sum 7.105 -30.620 -0.879 31.446 Atomic orbital electron populations 1.69966 1.06037 1.26588 1.50861 1.25043 0.94847 0.99208 0.95481 0.86668 0.79564 0.83266 0.78523 1.20303 1.21327 1.20309 1.21253 0.92946 0.91231 1.50496 0.92811 1.19098 0.94078 0.91264 0.97320 1.21652 0.99072 0.94039 1.00039 1.21446 0.97035 0.92720 1.02935 1.21793 1.00076 0.92099 1.03911 1.21104 0.88459 0.85641 0.75036 1.90703 1.14287 1.87727 1.48521 1.46123 1.10216 1.05838 1.77179 1.21379 0.94766 0.82195 1.02371 1.21849 0.98197 0.93675 1.02729 1.21090 0.97131 0.93413 0.98602 1.21676 0.99169 0.97552 0.97258 1.21539 0.97843 0.94599 1.01843 1.21546 0.98215 0.98209 0.97812 1.21522 0.99067 0.97242 0.97926 1.21564 0.97627 0.94062 1.01844 0.93008 0.96577 0.96591 0.93499 0.93493 0.91837 0.91831 0.89200 0.89205 0.76754 0.91452 0.91781 0.91241 0.91244 0.90845 0.91463 0.91918 0.92036 0.91969 0.92091 0.92238 0.92140 0.92009 0.91942 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 13 C 0.51 7.32 7.83 -10.99 -0.09 7.23 16 14 O -0.54 -10.11 15.98 5.56 0.09 -10.02 16 15 N -0.74 -7.55 5.56 -60.30 -0.33 -7.89 16 16 C 0.12 1.09 5.43 -4.04 -0.02 1.07 16 17 C -0.13 -0.80 4.80 -26.73 -0.13 -0.93 16 18 C -0.08 -0.51 2.19 -90.62 -0.20 -0.71 16 19 C -0.12 -0.78 4.96 -26.73 -0.13 -0.91 16 20 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 21 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 22 C -0.12 -0.64 5.92 -26.76 -0.16 -0.80 16 23 C -0.11 -0.61 5.20 -26.76 -0.14 -0.75 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 29 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.40 2.85 8.47 -40.82 -0.35 2.50 16 34 H 0.07 0.70 6.57 -51.93 -0.34 0.36 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -33.68 377.30 -10.44 -44.11 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -9.44 Total: -4.29 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -2.15 Total: -17.64 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.40 Total: -34.92 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.68 -10.44 -44.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588149819.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.919 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds