Wall clock time and date at job start Tue Mar 31 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47060 * 300.00449 * 3 2 1 5 5 C 1.53002 * 109.47233 * 299.99657 * 4 3 2 6 6 C 1.52997 * 109.47415 * 180.02562 * 5 4 3 7 7 N 1.46493 * 109.47228 * 175.00130 * 6 5 4 8 8 C 1.34782 * 120.00325 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99590 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00477 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47380 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47260 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47260 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47191 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99726 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99781 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00109 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99571 * 180.02562 * 16 14 13 19 19 H 1.48489 * 109.47346 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46719 * 120.00496 * 18 16 14 21 21 H 1.48503 * 109.46808 * 240.00100 * 18 16 14 22 22 C 1.52997 * 109.46817 * 60.00194 * 5 4 3 23 23 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 27 27 H 1.08996 * 109.46884 * 120.00752 * 2 1 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 31 31 H 1.09004 * 109.46724 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47075 * 300.00932 * 5 4 3 33 33 H 1.09000 * 109.46818 * 295.00198 * 6 5 4 34 34 H 1.09001 * 109.47096 * 55.00094 * 6 5 4 35 35 H 0.97003 * 120.00270 * 0.02562 * 7 6 5 36 36 H 1.09000 * 109.46998 * 300.00095 * 10 8 7 37 37 H 1.09001 * 109.47227 * 59.99631 * 10 8 7 38 38 H 1.09000 * 109.46818 * 299.99834 * 11 10 8 39 39 H 1.09001 * 109.47096 * 59.99730 * 11 10 8 40 40 H 1.09001 * 109.46578 * 299.99690 * 12 11 10 41 41 H 1.09001 * 109.47254 * 59.99866 * 12 11 10 42 42 H 1.09000 * 109.47278 * 300.00141 * 13 12 11 43 43 H 1.09001 * 109.47096 * 59.99769 * 13 12 11 44 44 H 0.96997 * 119.99831 * 179.97438 * 17 16 14 45 45 H 1.09002 * 109.47153 * 60.00231 * 22 5 4 46 46 H 1.09001 * 109.47289 * 180.02562 * 22 5 4 47 47 H 1.09000 * 109.47486 * 299.99829 * 23 2 1 48 48 H 1.09002 * 109.46716 * 179.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1637 -1.2492 5 6 2.0399 1.4426 -2.4985 6 6 1.5304 2.1642 -3.7477 7 7 2.1145 1.5466 -4.9408 8 6 1.8068 2.0207 -6.1644 9 8 1.0459 2.9583 -6.2776 10 6 2.4071 1.3851 -7.3917 11 6 1.8977 2.1067 -8.6409 12 6 2.5078 1.4618 -9.8870 13 6 1.9988 2.1839 -11.1362 14 6 2.6003 1.5490 -12.3635 15 1 3.2774 0.7137 -12.2626 16 6 2.2851 2.0339 -13.6152 17 7 1.4602 3.0507 -13.7380 18 14 3.0301 1.2464 -15.1365 19 1 3.9187 0.1282 -14.7304 20 1 1.9448 0.7250 -16.0058 21 1 3.8184 2.2598 -15.8828 22 6 1.5299 0.0001 -2.4985 23 6 2.0399 -0.7213 -1.2493 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9562 0.8900 30 1 0.4400 2.1637 -1.2492 31 1 1.8937 3.1913 -1.2494 32 1 3.1299 1.4425 -2.4985 33 1 0.4441 2.0876 -3.7938 34 1 1.8191 3.2143 -3.7038 35 1 2.7228 0.7964 -4.8503 36 1 3.4935 1.4608 -7.3456 37 1 2.1177 0.3351 -7.4357 38 1 0.8113 2.0306 -8.6868 39 1 2.1868 3.1568 -8.5972 40 1 3.5941 1.5384 -9.8408 41 1 2.2191 0.4116 -9.9310 42 1 0.9125 2.1078 -11.1826 43 1 2.2879 3.2339 -11.0920 44 1 1.2388 3.3920 -14.6185 45 1 0.4399 0.0001 -2.4985 46 1 1.8936 -0.5139 -3.3883 47 1 1.6766 -1.7489 -1.2493 48 1 3.1300 -0.7209 -1.2495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588153427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:29 Heat of formation + Delta-G solvation = -99.296742 kcal Electronic energy + Delta-G solvation = -21615.027216 eV Core-core repulsion = 18474.313182 eV Total energy + Delta-G solvation = -3140.714034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13133 -39.15543 -35.43422 -34.74544 -32.66701 -32.24975 -31.17857 -29.76071 -27.90667 -26.00519 -24.76575 -23.12057 -22.24815 -21.30641 -20.19449 -19.91765 -18.99586 -16.88298 -16.25311 -16.07533 -15.89388 -15.73596 -15.04477 -14.77027 -14.43279 -14.24319 -13.97055 -13.61996 -13.23135 -13.16436 -12.70784 -12.57662 -12.49905 -12.10548 -11.91361 -11.80129 -11.64746 -11.55225 -11.41653 -11.31803 -10.97268 -10.61210 -10.50134 -10.47759 -10.45105 -10.38801 -10.37673 -9.74927 -9.58126 -9.18643 -9.09563 -8.94109 -8.28641 -5.93189 -3.95510 2.79484 3.19285 3.34499 3.41560 3.45677 4.18552 4.26163 4.31572 4.50739 4.68227 4.74969 4.78792 4.94778 4.98151 5.01566 5.12577 5.17363 5.26964 5.36636 5.37524 5.41543 5.42995 5.44730 5.51599 5.58987 5.62401 5.66577 5.71268 5.76302 5.87525 5.91125 5.95934 5.98698 6.13496 6.18159 6.34577 6.39716 6.59152 6.88069 7.06182 7.23509 7.49721 7.77075 7.93176 8.08672 8.33248 8.50530 9.12510 9.67982 11.18181 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.048235 B = 0.002096 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.354390 B =13355.448247 C =13621.104265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.113 4.113 4 C -0.114 4.114 5 C -0.097 4.097 6 C 0.123 3.877 7 N -0.738 5.738 8 C 0.510 3.490 9 O -0.537 6.537 10 C -0.139 4.139 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.118 4.118 23 C -0.114 4.114 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 -7.032 30.938 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.150 4.150 4 C -0.152 4.152 5 C -0.116 4.116 6 C -0.001 4.001 7 N -0.392 5.392 8 C 0.298 3.702 9 O -0.413 6.413 10 C -0.179 4.179 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.147 4.147 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.155 4.155 23 C -0.152 4.152 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.233 0.767 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.135 -6.225 30.721 31.366 hybrid contribution 0.678 -0.750 -0.811 1.296 sum 1.813 -6.976 29.910 30.766 Atomic orbital electron populations 1.21953 0.95296 1.01658 1.02038 1.21107 0.96018 0.96007 0.98026 1.21544 1.00542 0.95267 0.97693 1.21541 1.01385 0.98860 0.93426 1.21397 1.00869 0.95350 0.93990 1.21355 0.98354 0.97019 0.83384 1.46118 1.50110 1.36987 1.05941 1.21097 0.81079 0.83406 0.84649 1.90705 1.35619 1.28229 1.86711 1.21789 1.01735 1.01310 0.93051 1.21445 1.00991 0.99635 0.92047 1.21649 0.99117 0.99197 0.94821 1.19106 0.96474 0.95627 0.90612 1.21327 1.27169 1.15939 0.91286 0.92704 1.25054 0.95320 0.95147 0.99156 1.69985 1.35096 1.25110 1.23267 0.86553 0.79024 0.79279 0.83231 1.19789 1.21073 1.21066 1.21653 1.01417 0.94677 0.97768 1.21564 1.00516 0.98833 0.94278 0.91870 0.92900 0.92921 0.91478 0.91988 0.91927 0.91264 0.91699 0.90588 0.91699 0.91691 0.76745 0.89226 0.89229 0.91839 0.91843 0.93502 0.93500 0.96583 0.96582 0.93119 0.91329 0.91895 0.91961 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.50 37.16 0.32 -0.53 16 2 C -0.09 -0.50 3.20 -90.62 -0.29 -0.79 16 3 C -0.11 -0.61 5.45 -26.73 -0.15 -0.75 16 4 C -0.11 -0.69 4.93 -26.73 -0.13 -0.82 16 5 C -0.10 -0.63 2.22 -90.62 -0.20 -0.84 16 6 C 0.12 1.15 5.07 -4.05 -0.02 1.13 16 7 N -0.74 -7.47 5.28 -60.30 -0.32 -7.79 16 8 C 0.51 7.28 7.83 -10.99 -0.09 7.19 16 9 O -0.54 -10.08 15.98 5.55 0.09 -9.99 16 10 C -0.14 -1.89 5.70 -27.89 -0.16 -2.05 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 13 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 14 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.78 13.29 55.43 0.74 -27.05 16 18 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 C -0.12 -0.73 4.80 -26.73 -0.13 -0.86 16 23 C -0.11 -0.63 5.45 -26.73 -0.15 -0.78 16 24 H 0.06 0.38 4.81 -51.93 -0.25 0.13 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 2.92 7.65 -40.82 -0.31 2.60 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 46 H 0.06 0.39 7.18 -51.93 -0.37 0.01 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -33.58 370.92 -9.90 -43.47 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -9.17 Total: -4.18 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.80 Total: -17.13 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.42 Total: -34.83 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.58 -9.90 -43.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588153427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.824 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds