Wall clock time and date at job start Tue Mar 31 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47301 * 2 1 4 4 C 1.53002 * 109.47360 * 120.00238 * 2 1 3 5 5 C 1.53003 * 109.46969 * 174.22867 * 4 2 1 6 6 H 1.09001 * 110.89111 * 58.72132 * 5 4 2 7 7 C 1.55161 * 111.00168 * 294.83643 * 5 4 2 8 8 C 1.54323 * 102.94052 * 206.38644 * 7 5 4 9 9 N 1.47025 * 107.27091 * 22.19689 * 8 7 5 10 10 C 1.34776 * 125.64678 * 181.01784 * 9 8 7 11 11 O 1.21285 * 119.99827 * 180.02562 * 10 9 8 12 12 C 1.50704 * 120.00106 * 0.02752 * 10 9 8 13 13 C 1.52998 * 109.47077 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47208 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47208 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47077 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99929 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00022 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99952 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46848 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46673 * 120.00159 * 20 18 16 23 23 H 1.48497 * 109.47052 * 240.00069 * 20 18 16 24 24 C 1.47423 * 108.70341 * 1.28608 * 9 8 7 25 25 H 1.09003 * 109.46854 * 298.11545 * 1 2 3 26 26 H 1.08989 * 109.47543 * 58.11453 * 1 2 3 27 27 H 1.09004 * 109.46968 * 178.12027 * 1 2 3 28 28 H 1.09005 * 109.47414 * 240.00432 * 2 1 3 29 29 H 1.08991 * 109.47627 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47310 * 300.00642 * 3 2 1 31 31 H 1.09003 * 109.47033 * 59.99781 * 3 2 1 32 32 H 1.08998 * 109.46865 * 54.22732 * 4 2 1 33 33 H 1.08998 * 109.47136 * 294.22196 * 4 2 1 34 34 H 1.09003 * 110.71505 * 88.02645 * 7 5 4 35 35 H 1.08998 * 110.72296 * 324.75032 * 7 5 4 36 36 H 1.09002 * 109.88586 * 262.77798 * 8 7 5 37 37 H 1.09002 * 109.87838 * 141.61363 * 8 7 5 38 38 H 1.08998 * 109.47243 * 59.99557 * 12 10 9 39 39 H 1.08997 * 109.47112 * 299.99733 * 12 10 9 40 40 H 1.08998 * 109.47129 * 59.99875 * 13 12 10 41 41 H 1.08997 * 109.47248 * 300.00038 * 13 12 10 42 42 H 1.09008 * 109.46839 * 60.00115 * 14 13 12 43 43 H 1.08997 * 109.47344 * 300.00342 * 14 13 12 44 44 H 1.08997 * 109.47248 * 300.00401 * 15 14 13 45 45 H 1.08998 * 109.47129 * 60.00238 * 15 14 13 46 46 H 0.97000 * 120.00184 * 179.97438 * 19 18 16 47 47 H 1.09001 * 110.36871 * 94.47989 * 24 9 8 48 48 H 1.09000 * 110.36660 * 216.80591 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5631 -0.8481 1.1787 6 1 4.0317 0.1331 1.1020 7 6 3.9911 -1.7625 0.0004 8 6 5.3549 -2.3131 0.4679 9 7 5.3921 -2.2000 1.9334 10 6 6.4244 -2.5572 2.7227 11 8 6.3445 -2.4193 3.9251 12 6 7.6782 -3.1278 2.1114 13 6 8.6857 -3.4463 3.2179 14 6 9.9584 -4.0262 2.5973 15 6 10.9657 -4.3454 3.7039 16 6 12.2194 -4.9160 3.0925 17 1 12.2905 -5.0391 2.0219 18 6 13.2757 -5.2808 3.9000 19 7 13.1890 -5.1314 5.2038 20 14 14.8295 -5.9888 3.1423 21 1 14.6752 -6.0543 1.6669 22 1 15.9853 -5.1200 3.4807 23 1 15.0633 -7.3542 3.6772 24 6 4.1107 -1.6374 2.3968 25 1 -0.3633 0.4843 0.9064 26 1 -0.3634 0.5428 -0.8725 27 1 -0.3633 -1.0272 -0.0337 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.5947 -1.7148 1.3023 33 1 1.7636 -0.1513 2.1362 34 1 4.1028 -1.1833 -0.9162 35 1 3.2753 -2.5726 -0.1387 36 1 6.1618 -1.7253 0.0302 37 1 5.4531 -3.3581 0.1741 38 1 8.1111 -2.4005 1.4247 39 1 7.4345 -4.0405 1.5677 40 1 8.2530 -4.1735 3.9049 41 1 8.9294 -2.5334 3.7612 42 1 10.3913 -3.2993 1.9100 43 1 9.7144 -4.9392 2.0542 44 1 11.2097 -3.4326 4.2473 45 1 10.5326 -5.0724 4.3908 46 1 13.9320 -5.3885 5.7719 47 1 3.4234 -2.4368 2.6738 48 1 4.2738 -0.9668 3.2405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588160356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:20 Heat of formation + Delta-G solvation = -85.232518 kcal Electronic energy + Delta-G solvation = -21666.769584 eV Core-core repulsion = 18526.665420 eV Total energy + Delta-G solvation = -3140.104163 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.23578 -38.32776 -36.19846 -34.84576 -32.66099 -32.02993 -29.87010 -29.54283 -27.59719 -26.77297 -25.20042 -23.37630 -22.11313 -21.20261 -20.03521 -19.95150 -18.95896 -17.01832 -16.67938 -16.12194 -15.75240 -15.22496 -14.87050 -14.65936 -14.37684 -14.14449 -13.87905 -13.72688 -12.99182 -12.92469 -12.79291 -12.61898 -12.56036 -12.17201 -12.03811 -11.90029 -11.64850 -11.56546 -11.47675 -11.31948 -10.97464 -10.94671 -10.82428 -10.72787 -10.49438 -10.46073 -10.37113 -9.75561 -9.57822 -9.18902 -8.94177 -8.72338 -8.28494 -5.93000 -3.95381 2.75706 2.93231 3.34608 3.41627 3.45727 4.01902 4.24141 4.33205 4.50627 4.53451 4.58654 4.72754 4.88637 4.96643 5.01341 5.09667 5.21589 5.27531 5.33350 5.37093 5.38276 5.39209 5.42438 5.45573 5.48080 5.53444 5.57603 5.62108 5.70871 5.76861 5.83542 5.88986 5.97206 6.01834 6.18197 6.18832 6.36446 6.58960 6.87957 7.05563 7.23464 7.47725 7.77204 7.93300 8.08780 8.26696 8.50598 9.12585 9.68133 11.18357 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.051601 B = 0.002180 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.497506 B =12839.939627 C =13112.729958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.104 4.104 5 C -0.103 4.103 6 H 0.087 0.913 7 C -0.127 4.127 8 C 0.100 3.900 9 N -0.627 5.627 10 C 0.527 3.473 11 O -0.535 6.535 12 C -0.133 4.133 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.109 3.891 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.259 0.741 47 H 0.065 0.935 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.369 10.807 -13.957 31.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.208 4.208 4 C -0.142 4.142 5 C -0.122 4.122 6 H 0.105 0.895 7 C -0.164 4.164 8 C -0.023 4.023 9 N -0.364 5.364 10 C 0.317 3.683 11 O -0.411 6.411 12 C -0.173 4.173 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.018 4.018 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.147 4.147 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.014 4.014 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.224 10.821 -13.084 31.240 hybrid contribution 0.890 -0.417 -0.417 1.068 sum -25.334 10.404 -13.501 30.534 Atomic orbital electron populations 1.21847 0.95283 1.01689 1.01758 1.21119 0.95582 0.96418 0.98392 1.21900 1.01264 0.95906 1.01682 1.21582 0.93499 1.00921 0.98180 1.22496 0.96113 0.99081 0.94483 0.89463 1.22719 0.95932 0.99378 0.98411 1.22035 0.98339 1.01348 0.80611 1.48610 1.15700 1.64713 1.07333 1.20826 0.83849 0.77083 0.86523 1.90709 1.81625 1.54150 1.14648 1.21771 0.92967 1.01691 1.00853 1.21464 0.94699 1.01799 0.96205 1.21646 0.94406 0.98854 0.99827 1.19106 0.92650 0.96796 0.93259 1.21326 0.99764 1.41354 0.93286 0.92700 1.25050 0.98714 0.96040 0.94851 1.69987 1.31797 1.48438 1.03235 0.86553 0.83422 0.78745 0.79369 1.19791 1.21069 1.21064 1.22271 0.84932 0.97014 0.97176 0.92712 0.92763 0.92727 0.90983 0.92402 0.92877 0.92712 0.91539 0.91489 0.90016 0.90452 0.91232 0.91248 0.89289 0.89284 0.91818 0.91812 0.93496 0.93497 0.96570 0.96569 0.93121 0.91677 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.19 37.15 0.34 -0.36 16 2 C -0.10 -0.48 2.83 -90.62 -0.26 -0.73 16 3 C -0.15 -0.77 8.98 37.16 0.33 -0.43 16 4 C -0.10 -0.58 4.20 -26.73 -0.11 -0.69 16 5 C -0.10 -0.69 2.85 -88.35 -0.25 -0.94 16 6 H 0.09 0.62 6.63 -51.93 -0.34 0.27 16 7 C -0.13 -0.75 5.48 -24.89 -0.14 -0.88 16 8 C 0.10 0.81 6.48 -3.06 -0.02 0.79 16 9 N -0.63 -7.35 3.32 -170.37 -0.57 -7.91 16 10 C 0.53 8.13 7.85 -10.98 -0.09 8.04 16 11 O -0.54 -10.50 16.24 5.55 0.09 -10.41 16 12 C -0.13 -1.92 4.89 -27.88 -0.14 -2.06 16 13 C -0.10 -1.94 4.50 -26.73 -0.12 -2.06 16 14 C -0.11 -2.33 5.15 -26.73 -0.14 -2.46 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 17 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -27.83 13.29 55.43 0.74 -27.10 16 20 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.11 1.08 6.38 -2.41 -0.02 1.07 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.05 0.24 8.14 -51.94 -0.42 -0.18 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.35 7.20 -51.93 -0.37 -0.03 16 29 H 0.06 0.31 6.59 -51.93 -0.34 -0.04 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.37 8.13 -51.93 -0.42 -0.06 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.38 8.01 -51.93 -0.42 -0.04 16 35 H 0.08 0.42 8.03 -51.93 -0.42 0.00 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.06 0.63 8.04 -51.93 -0.42 0.22 16 48 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -33.92 378.94 -9.65 -43.56 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -9.45 Total: -6.63 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.15 Total: -14.33 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.17 Total: -35.01 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.92 -9.65 -43.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.668 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds