Wall clock time and date at job start Tue Mar 31 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46795 * 2 1 4 4 C 1.52995 * 109.47425 * 119.99896 * 2 1 3 5 5 C 1.53000 * 109.46910 * 65.00110 * 4 2 1 6 6 H 1.09000 * 110.91493 * 308.90087 * 5 4 2 7 7 C 1.55405 * 111.03706 * 72.68520 * 5 4 2 8 8 C 1.54325 * 102.82616 * 153.46985 * 7 5 4 9 9 N 1.47018 * 107.40412 * 337.97548 * 8 7 5 10 10 C 1.34777 * 125.64981 * 178.82520 * 9 8 7 11 11 O 1.21275 * 120.00167 * 180.02562 * 10 9 8 12 12 C 1.50694 * 119.99872 * 0.02817 * 10 9 8 13 13 C 1.53000 * 109.47301 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47222 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47222 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47301 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00428 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00200 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99609 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00304 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47122 * 59.99657 * 20 18 16 22 22 H 1.48496 * 109.47308 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46902 * 300.00079 * 20 18 16 24 24 C 1.47426 * 108.70517 * 358.86539 * 9 8 7 25 25 H 1.08997 * 109.47335 * 60.00347 * 1 2 3 26 26 H 1.09006 * 109.47045 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47651 * 299.99806 * 1 2 3 28 28 H 1.08992 * 109.47263 * 240.00355 * 2 1 3 29 29 H 1.08995 * 109.47277 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47052 * 299.99726 * 3 2 1 31 31 H 1.09005 * 109.47194 * 59.99944 * 3 2 1 32 32 H 1.09008 * 109.46743 * 305.00253 * 4 2 1 33 33 H 1.08997 * 109.47221 * 185.00448 * 4 2 1 34 34 H 1.09000 * 110.69068 * 35.18243 * 7 5 4 35 35 H 1.09002 * 110.85092 * 271.83237 * 7 5 4 36 36 H 1.09002 * 109.88192 * 218.47989 * 8 7 5 37 37 H 1.09000 * 109.88128 * 97.46841 * 8 7 5 38 38 H 1.08997 * 109.47569 * 299.99781 * 12 10 9 39 39 H 1.09007 * 109.47441 * 59.99852 * 12 10 9 40 40 H 1.09005 * 109.47215 * 300.00008 * 13 12 10 41 41 H 1.08998 * 109.47041 * 59.99705 * 13 12 10 42 42 H 1.09001 * 109.46994 * 299.99509 * 14 13 12 43 43 H 1.08998 * 109.47586 * 59.99753 * 14 13 12 44 44 H 1.09001 * 109.47265 * 300.00220 * 15 14 13 45 45 H 1.09007 * 109.46838 * 59.99388 * 15 14 13 46 46 H 0.97001 * 119.99766 * 180.02562 * 19 18 16 47 47 H 1.08999 * 110.36956 * 142.96999 * 24 9 8 48 48 H 1.09001 * 110.36709 * 265.18192 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 1 0.5694 -2.2982 0.9843 7 6 2.4779 -2.9617 0.1306 8 6 2.4592 -4.4104 0.6622 9 7 2.1633 -4.3472 2.1009 10 6 2.0384 -5.4067 2.9245 11 8 1.7914 -5.2356 4.0995 12 6 2.2057 -6.8039 2.3854 13 6 2.0161 -7.8140 3.5189 14 6 2.1866 -9.2326 2.9716 15 6 1.9976 -10.2427 4.1052 16 6 2.1649 -11.6399 3.5661 17 1 2.3837 -11.7924 2.5195 18 6 2.0377 -12.7238 4.4087 19 7 1.7698 -12.5382 5.6829 20 14 2.2457 -14.4558 3.7407 21 1 3.6074 -14.6050 3.1674 22 1 2.0610 -15.4362 4.8406 23 1 1.2335 -14.7031 2.6826 24 6 2.0249 -2.9329 2.4934 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8899 29 1 3.1299 1.4427 -0.0005 30 1 1.6766 1.9564 -0.8901 31 1 1.6765 1.9564 0.8900 32 1 1.6053 -0.2616 2.1369 33 1 3.1263 -0.6442 1.2951 34 1 3.4970 -2.5763 0.0973 35 1 2.0108 -2.9056 -0.8526 36 1 3.4320 -4.8760 0.5040 37 1 1.6864 -4.9834 0.1497 38 1 1.4627 -6.9851 1.6088 39 1 3.2052 -6.9138 1.9647 40 1 2.7594 -7.6327 4.2953 41 1 1.0167 -7.7042 3.9400 42 1 1.4435 -9.4142 2.1951 43 1 3.1861 -9.3421 2.5508 44 1 2.7409 -10.0609 4.8815 45 1 0.9982 -10.1333 4.5264 46 1 1.6806 -13.3008 6.2758 47 1 1.2393 -2.8217 3.2408 48 1 2.9706 -2.5517 2.8785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588160357.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:22 Heat of formation + Delta-G solvation = -85.013422 kcal Electronic energy + Delta-G solvation = -21658.093309 eV Core-core repulsion = 18517.998646 eV Total energy + Delta-G solvation = -3140.094663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.22731 -38.31208 -36.21153 -34.84472 -32.65928 -32.03738 -29.86992 -29.53653 -27.60163 -26.77805 -25.20173 -23.36868 -22.09239 -21.15362 -20.09133 -19.95514 -18.98712 -17.01292 -16.65276 -16.11488 -15.73807 -15.26941 -14.87072 -14.66660 -14.38320 -14.09703 -13.88459 -13.68803 -13.03788 -12.93098 -12.78012 -12.61071 -12.54873 -12.19665 -12.03578 -11.90295 -11.63551 -11.57411 -11.47283 -11.33508 -10.94524 -10.92268 -10.80035 -10.74359 -10.51184 -10.48033 -10.36557 -9.75616 -9.57266 -9.18690 -8.95943 -8.72209 -8.27567 -5.92456 -3.94955 2.75740 2.93193 3.37033 3.41263 3.43591 4.02760 4.24241 4.31363 4.50822 4.53299 4.58581 4.73373 4.88312 4.97602 5.00959 5.10194 5.21630 5.27714 5.33561 5.36726 5.38053 5.39278 5.42707 5.45401 5.48403 5.53670 5.57309 5.62238 5.71141 5.76990 5.83099 5.89032 5.97771 6.02633 6.18255 6.18912 6.36525 6.59005 6.88047 7.05611 7.23576 7.47760 7.76887 7.93534 8.09125 8.26704 8.50849 9.12518 9.68322 11.18811 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.051565 B = 0.002178 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.872950 B =12854.927113 C =13106.693237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.104 4.104 5 C -0.104 4.104 6 H 0.088 0.912 7 C -0.126 4.126 8 C 0.100 3.900 9 N -0.627 5.627 10 C 0.527 3.473 11 O -0.535 6.535 12 C -0.133 4.133 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.109 3.891 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.076 0.924 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.691 27.909 -14.962 31.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.142 4.142 5 C -0.123 4.123 6 H 0.106 0.894 7 C -0.164 4.164 8 C -0.023 4.023 9 N -0.363 5.363 10 C 0.317 3.683 11 O -0.411 6.411 12 C -0.173 4.173 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.014 4.014 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.094 0.906 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.521 27.809 -14.087 31.178 hybrid contribution 0.135 -0.995 -0.395 1.079 sum 0.655 26.814 -14.482 30.483 Atomic orbital electron populations 1.21913 0.95246 1.01939 1.01705 1.21102 0.95940 0.96055 0.98367 1.21848 1.00933 0.96031 1.01754 1.21583 1.01041 0.93344 0.98198 1.22524 1.00680 0.94528 0.94546 0.89403 1.22766 1.00955 0.93777 0.98918 1.22023 1.01211 0.97910 0.81198 1.48605 1.72078 1.06139 1.09521 1.20818 0.75626 0.86235 0.85589 1.90706 1.47851 1.86126 1.16435 1.21772 1.03613 0.90662 1.01243 1.21465 1.02721 0.93933 0.96044 1.21646 0.99977 0.92999 1.00118 1.19095 0.97207 0.92412 0.93018 1.21249 1.48108 0.91461 0.95065 0.92815 1.25050 0.95466 0.99189 0.94905 1.69969 1.49070 1.30715 1.03698 0.86665 0.78584 0.84342 0.78418 1.20303 1.21326 1.20307 1.22221 1.01441 0.80775 0.96943 0.92869 0.92367 0.92676 0.91059 0.92721 0.92773 0.92696 0.91479 0.91523 0.90465 0.90007 0.91258 0.91261 0.89285 0.89287 0.91816 0.91813 0.93499 0.93499 0.96581 0.96586 0.93009 0.90585 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 8.97 37.16 0.33 -0.45 16 2 C -0.10 -0.48 2.87 -90.62 -0.26 -0.74 16 3 C -0.15 -0.70 9.19 37.16 0.34 -0.36 16 4 C -0.10 -0.58 4.19 -26.73 -0.11 -0.69 16 5 C -0.10 -0.70 2.88 -88.33 -0.25 -0.96 16 6 H 0.09 0.62 6.31 -51.93 -0.33 0.29 16 7 C -0.13 -0.75 5.85 -24.76 -0.14 -0.89 16 8 C 0.10 0.81 6.48 -3.07 -0.02 0.79 16 9 N -0.63 -7.36 3.33 -170.52 -0.57 -7.93 16 10 C 0.53 8.14 7.85 -10.99 -0.09 8.05 16 11 O -0.54 -10.50 16.24 5.56 0.09 -10.41 16 12 C -0.13 -1.92 4.89 -27.89 -0.14 -2.06 16 13 C -0.10 -1.94 4.50 -26.73 -0.12 -2.07 16 14 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 15 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 16 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 17 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.83 13.29 55.43 0.74 -27.09 16 20 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.11 1.09 6.38 -2.53 -0.02 1.07 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.32 6.42 -51.93 -0.33 -0.02 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.35 7.62 -51.93 -0.40 -0.05 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.07 0.36 7.98 -51.93 -0.41 -0.05 16 34 H 0.08 0.42 7.92 -51.93 -0.41 0.01 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 48 H 0.06 0.63 8.04 -51.93 -0.42 0.22 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -33.86 379.16 -9.65 -43.51 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -9.44 Total: -6.53 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -1.16 Total: -14.38 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.17 Total: -35.02 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.86 -9.65 -43.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160357.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.506 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds