Wall clock time and date at job start Tue Mar 31 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 9 9 H 1.09001 * 109.47375 * 59.99908 * 8 7 6 10 10 N 1.46504 * 109.47417 * 179.97438 * 8 7 6 11 11 C 1.34774 * 119.99618 * 275.00242 * 10 8 7 12 12 O 1.21285 * 120.00117 * 359.97438 * 11 10 8 13 13 C 1.50703 * 119.99735 * 179.97438 * 11 10 8 14 14 C 1.53002 * 109.47014 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47086 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47383 * 179.97438 * 15 14 13 17 17 C 1.50690 * 109.47522 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00097 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00289 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99954 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00040 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46589 * 89.99605 * 21 19 17 23 23 H 1.48489 * 109.47170 * 209.99833 * 21 19 17 24 24 H 1.48496 * 109.46987 * 330.00385 * 21 19 17 25 25 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 26 26 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 27 27 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 30 30 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 31 31 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 32 32 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 34 34 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 35 35 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 36 36 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.47097 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 39 39 H 0.96997 * 120.00148 * 94.99044 * 10 8 7 40 40 H 1.08995 * 109.47091 * 299.99566 * 13 11 10 41 41 H 1.09000 * 109.47289 * 60.00223 * 13 11 10 42 42 H 1.09005 * 109.46885 * 299.99846 * 14 13 11 43 43 H 1.08991 * 109.47341 * 59.99752 * 14 13 11 44 44 H 1.08993 * 109.47410 * 299.99753 * 15 14 13 45 45 H 1.09007 * 109.47091 * 59.99876 * 15 14 13 46 46 H 1.09005 * 109.46920 * 299.99885 * 16 15 14 47 47 H 1.08998 * 109.46741 * 59.99385 * 16 15 14 48 48 H 0.96998 * 119.99508 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5300 -2.1638 1.2490 6 6 2.0400 -2.8850 -0.0002 7 6 1.5299 -2.1637 -1.2494 8 6 2.0399 -0.7212 -1.2494 9 1 3.1299 -0.7212 -1.2495 10 7 1.5520 -0.0307 -2.4458 11 6 2.2292 -0.1336 -3.6065 12 8 3.2427 -0.7975 -3.6604 13 6 1.7270 0.5763 -4.8373 14 6 2.6719 0.2976 -6.0080 15 6 2.1624 1.0188 -7.2574 16 6 3.1076 0.7406 -8.4280 17 6 2.6055 1.4504 -9.6588 18 1 1.7027 2.0413 -9.6109 19 6 3.2991 1.3464 -10.8458 20 7 2.8610 1.9664 -11.9199 21 14 4.8617 0.3262 -10.9283 22 1 4.5208 -1.0726 -11.2922 23 1 5.7718 0.8967 -11.9535 24 1 5.5343 0.3432 -9.6045 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6768 -0.2075 2.1392 32 1 3.1300 -0.7217 1.2488 33 1 1.8931 -2.6776 2.1392 34 1 0.4400 -2.1639 1.2491 35 1 3.1299 -2.8850 -0.0003 36 1 1.6770 -3.9128 0.0000 37 1 1.8928 -2.6777 -2.1394 38 1 0.4398 -2.1637 -1.2493 39 1 0.7415 0.5005 -2.4026 40 1 0.7280 0.2158 -5.0825 41 1 1.6900 1.6492 -4.6483 42 1 3.6707 0.6584 -5.7625 43 1 2.7094 -0.7752 -6.1971 44 1 1.1635 0.6584 -7.5031 45 1 2.1252 2.0916 -7.0679 46 1 4.1064 1.1013 -8.1822 47 1 3.1451 -0.3321 -8.6175 48 1 3.3489 1.8929 -12.7550 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588161301.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:08 Heat of formation + Delta-G solvation = -88.702664 kcal Electronic energy + Delta-G solvation = -22461.267765 eV Core-core repulsion = 19321.013125 eV Total energy + Delta-G solvation = -3140.254640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.73115 -38.82646 -35.04246 -34.36393 -33.41724 -32.55296 -30.57981 -29.47598 -27.76938 -26.73655 -25.66858 -23.17863 -21.79747 -21.37478 -20.17650 -19.99162 -18.85312 -16.95404 -16.63066 -16.31561 -15.69569 -15.27110 -14.82591 -14.79078 -14.22807 -14.17297 -13.80066 -13.68702 -13.33946 -13.17629 -12.62600 -12.44961 -12.36658 -12.27395 -12.04075 -11.88027 -11.82298 -11.71840 -11.49409 -11.28769 -11.08144 -10.71768 -10.70578 -10.57382 -10.50752 -10.42506 -9.90425 -9.76420 -9.62006 -9.36217 -9.09511 -9.07646 -8.47471 -5.98798 -3.96087 2.74330 3.13961 3.36916 3.43776 3.50194 4.19061 4.28226 4.41601 4.51906 4.67741 4.81469 4.86237 4.91185 5.01310 5.04682 5.17833 5.26944 5.29337 5.30935 5.34033 5.37010 5.40111 5.46480 5.55983 5.63825 5.67343 5.71572 5.76814 5.81128 5.85017 5.89368 5.96573 6.04433 6.06806 6.17577 6.20175 6.40555 6.48181 6.71788 6.85902 7.02102 7.40832 7.47761 7.53655 7.86936 8.29693 8.60394 9.06304 9.64727 11.14736 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036383 B = 0.002679 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.403481 B =10448.400136 C =10785.012842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.132 4.132 8 C 0.157 3.843 9 H 0.086 0.914 10 N -0.732 5.732 11 C 0.512 3.488 12 O -0.538 6.538 13 C -0.140 4.140 14 C -0.105 4.105 15 C -0.102 4.102 16 C -0.015 4.015 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.264 1.264 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.397 0.603 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.015 0.985 47 H 0.011 0.989 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -5.522 30.546 31.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.200 4.200 4 C -0.144 4.144 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.170 4.170 8 C 0.052 3.948 9 H 0.104 0.896 10 N -0.385 5.385 11 C 0.300 3.700 12 O -0.414 6.414 13 C -0.180 4.180 14 C -0.143 4.143 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.233 0.767 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.007 -5.960 30.303 31.287 hybrid contribution 0.359 -0.217 -0.207 0.468 sum -4.648 -6.177 30.096 31.073 Atomic orbital electron populations 1.22004 0.94345 1.02370 1.01713 1.20784 0.96102 0.95613 0.94662 1.21866 1.01308 0.94899 1.01883 1.21567 1.00854 0.95374 0.96581 1.21615 1.01047 0.95486 0.97887 1.21487 1.01081 0.98867 0.94052 1.21969 1.01031 0.95498 0.98551 1.20902 0.99629 0.90919 0.83360 0.89632 1.46228 1.29531 1.52947 1.09800 1.21055 0.83572 0.80793 0.84609 1.90692 1.24845 1.40843 1.84992 1.21777 1.01804 1.01196 0.93195 1.21468 0.98166 1.01514 0.93189 1.21477 0.99727 0.99048 0.93763 1.19576 0.95294 0.96423 0.93991 1.21188 1.11238 1.30452 0.92793 0.91122 1.25046 0.97552 0.95393 0.95655 1.69926 1.40104 1.43804 1.00753 0.86769 0.83802 0.80615 0.78096 1.20321 1.21474 1.18888 0.92349 0.92759 0.91658 0.92521 0.92325 0.92493 0.91568 0.91693 0.91985 0.91614 0.91804 0.91832 0.91351 0.91567 0.76741 0.89118 0.89135 0.91852 0.91856 0.92906 0.92883 0.96634 0.97076 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 7.61 37.16 0.28 -0.56 16 2 C -0.07 -0.48 0.56 -154.51 -0.09 -0.57 16 3 C -0.14 -0.99 8.32 37.15 0.31 -0.68 16 4 C -0.11 -0.65 4.73 -26.73 -0.13 -0.78 16 5 C -0.12 -0.74 5.65 -26.73 -0.15 -0.89 16 6 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 7 C -0.13 -1.19 5.22 -26.73 -0.14 -1.32 16 8 C 0.16 1.45 1.59 -67.93 -0.11 1.34 16 9 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 10 N -0.73 -7.10 4.31 -53.80 -0.23 -7.34 16 11 C 0.51 6.87 7.79 -10.98 -0.09 6.79 16 12 O -0.54 -9.45 15.64 5.55 0.09 -9.37 16 13 C -0.14 -1.80 5.70 -27.88 -0.16 -1.96 16 14 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 15 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 16 C -0.02 -0.39 4.04 -27.89 -0.11 -0.50 16 17 C -0.52 -15.24 9.66 -34.45 -0.33 -15.57 16 18 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 19 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.61 13.96 55.43 0.77 -27.84 16 21 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.29 6.51 -51.93 -0.34 -0.05 16 27 H 0.06 0.38 4.81 -51.93 -0.25 0.13 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.37 6.43 -51.93 -0.33 0.04 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.54 6.43 -51.93 -0.33 0.20 16 39 H 0.40 2.90 6.66 -40.82 -0.27 2.63 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 43 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 47 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -33.43 363.01 -8.79 -42.22 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -9.00 Total: -3.04 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -1.22 Total: -18.01 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.54 Total: -35.17 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.43 -8.79 -42.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161301.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.483 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds