Wall clock time and date at job start Tue Mar 31 2020 05:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47295 * 2 1 4 4 C 1.53000 * 109.47227 * 240.00247 * 2 1 3 5 5 C 1.53002 * 109.47085 * 299.99874 * 4 2 1 6 6 C 1.53000 * 109.47269 * 300.00421 * 5 4 2 7 7 C 1.53000 * 109.47411 * 59.99779 * 6 5 4 8 8 C 1.52997 * 109.47272 * 120.00113 * 2 1 3 9 9 H 1.08995 * 109.47843 * 180.02562 * 8 2 1 10 10 N 1.46504 * 109.47143 * 300.00149 * 8 2 1 11 11 C 1.34774 * 120.00240 * 204.99720 * 10 8 2 12 12 O 1.21283 * 119.99643 * 359.97438 * 11 10 8 13 13 C 1.50694 * 119.99993 * 179.97438 * 11 10 8 14 14 C 1.53001 * 109.47168 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47355 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47355 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.08998 * 109.46893 * 300.00204 * 1 2 3 26 26 H 1.09006 * 109.47051 * 59.99802 * 1 2 3 27 27 H 1.08993 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47248 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47450 * 300.00080 * 3 2 1 30 30 H 1.08998 * 109.47317 * 60.00055 * 3 2 1 31 31 H 1.09002 * 109.47186 * 180.02562 * 4 2 1 32 32 H 1.08992 * 109.47631 * 59.99826 * 4 2 1 33 33 H 1.08998 * 109.47621 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.46984 * 59.99710 * 5 4 2 35 35 H 1.09002 * 109.47270 * 299.99433 * 6 5 4 36 36 H 1.09002 * 109.47190 * 179.97438 * 6 5 4 37 37 H 1.08993 * 109.47122 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.47186 * 59.99603 * 7 6 5 39 39 H 0.97005 * 119.99919 * 24.99503 * 10 8 2 40 40 H 1.08994 * 109.47211 * 59.99931 * 13 11 10 41 41 H 1.09003 * 109.47615 * 299.99937 * 13 11 10 42 42 H 1.09002 * 109.46926 * 60.00175 * 14 13 11 43 43 H 1.08992 * 109.47494 * 300.00169 * 14 13 11 44 44 H 1.09002 * 109.46807 * 60.00291 * 15 14 13 45 45 H 1.08998 * 109.47285 * 299.99893 * 15 14 13 46 46 H 1.09007 * 109.46922 * 59.99890 * 16 15 14 47 47 H 1.09003 * 109.46836 * 300.00646 * 16 15 14 48 48 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2492 8 6 2.0400 -0.7213 1.2492 9 1 3.1300 -0.7209 1.2495 10 7 1.5516 -0.0307 2.4454 11 6 2.2284 -0.1335 3.6064 12 8 3.2415 -0.7981 3.6609 13 6 1.7263 0.5773 4.8367 14 6 2.6699 0.2975 6.0081 15 6 2.1606 1.0197 7.2571 16 6 3.1038 0.7394 8.4287 17 6 2.6017 1.4502 9.6589 18 1 1.6999 2.0424 9.6103 19 6 3.2938 1.3446 10.8468 20 7 4.3918 0.6231 10.9062 21 14 2.6718 2.2263 12.3716 22 1 3.5873 1.9541 13.5089 23 1 2.6236 3.6878 12.1133 24 1 1.3099 1.7374 12.7052 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -0.2074 -2.1392 33 1 1.8930 -2.6774 -2.1395 34 1 0.4400 -2.1637 -1.2493 35 1 3.1300 -2.8851 0.0000 36 1 1.6762 -3.9125 0.0001 37 1 1.8936 -2.6774 2.1391 38 1 0.4399 -2.1637 1.2492 39 1 0.7412 0.5006 2.4019 40 1 0.7270 0.2177 5.0817 41 1 1.6901 1.6502 4.6472 42 1 3.6695 0.6569 5.7633 43 1 2.7058 -0.7752 6.1976 44 1 1.1609 0.6607 7.5020 45 1 2.1251 2.0925 7.0674 46 1 4.1037 1.0980 8.1840 47 1 3.1389 -0.3335 8.6181 48 1 4.8789 0.5492 11.7418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588161302.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:11 Heat of formation + Delta-G solvation = -91.885705 kcal Electronic energy + Delta-G solvation = -22402.239846 eV Core-core repulsion = 19261.847179 eV Total energy + Delta-G solvation = -3140.392667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68489 -38.76564 -34.89793 -34.31087 -33.37670 -32.58485 -30.37920 -29.20198 -27.73676 -26.62734 -25.44943 -23.20733 -21.93923 -21.36308 -20.16226 -19.93217 -18.81772 -16.87547 -16.39827 -16.07107 -15.61161 -15.22978 -14.78076 -14.75105 -14.41450 -14.12076 -13.75797 -13.60036 -13.29012 -13.12105 -12.56025 -12.38048 -12.27223 -12.19306 -11.84271 -11.78141 -11.64127 -11.56856 -11.45472 -11.24888 -10.94260 -10.68292 -10.53758 -10.51524 -10.48591 -10.38465 -10.36974 -9.69195 -9.57462 -9.17873 -9.02189 -8.95537 -8.27841 -5.92776 -3.95273 2.81151 3.19565 3.36878 3.41108 3.43457 4.22709 4.31652 4.44940 4.50932 4.71281 4.85553 4.92054 4.94587 5.04976 5.08708 5.22006 5.32388 5.32776 5.38594 5.41727 5.43479 5.43728 5.49593 5.59073 5.66906 5.70826 5.75098 5.81700 5.84683 5.91275 5.93826 5.99917 6.08935 6.18355 6.22002 6.35350 6.48416 6.60035 6.88339 7.06453 7.23702 7.53668 7.76656 7.93397 8.08947 8.36441 8.50693 9.12326 9.68100 11.18565 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.041022 B = 0.002505 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.395509 B =11176.508142 C =11459.230742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.117 4.117 7 C -0.132 4.132 8 C 0.157 3.843 9 H 0.086 0.914 10 N -0.733 5.733 11 C 0.512 3.488 12 O -0.536 6.536 13 C -0.139 4.139 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.053 0.947 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.288 1.288 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.015 0.985 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.225 -2.428 -27.911 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.199 4.199 4 C -0.144 4.144 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.171 4.171 8 C 0.052 3.948 9 H 0.104 0.896 10 N -0.386 5.386 11 C 0.299 3.701 12 O -0.412 6.412 13 C -0.179 4.179 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.213 1.213 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.232 0.768 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.334 -2.961 -27.729 29.105 hybrid contribution -0.704 0.733 0.889 1.350 sum -9.037 -2.228 -26.840 28.408 Atomic orbital electron populations 1.22001 0.94380 1.02356 1.01671 1.20783 0.96074 0.95614 0.94698 1.21867 1.01332 0.94908 1.01843 1.21565 1.00870 0.95372 0.96563 1.21615 1.01020 0.95489 0.97896 1.21490 1.01105 0.98858 0.94042 1.21973 1.00991 0.95531 0.98571 1.20897 0.99640 0.90907 0.83356 0.89621 1.46239 1.29549 1.53007 1.09811 1.21073 0.83585 0.80837 0.84581 1.90698 1.24809 1.40710 1.84936 1.21793 1.01817 1.01010 0.93325 1.21438 0.98064 1.01580 0.92980 1.21649 0.99929 0.98435 0.94766 1.19091 0.94347 0.96983 0.91277 1.21253 1.09715 1.30196 0.94720 0.92826 1.25046 0.95036 0.95544 0.98959 1.69968 1.16777 1.40160 1.26601 0.86670 0.78625 0.80140 0.82612 1.21325 1.20290 1.20294 0.92778 0.92384 0.91661 0.92500 0.92529 0.92336 0.91679 0.91601 0.92000 0.91643 0.91773 0.91840 0.91304 0.91598 0.76812 0.89293 0.89300 0.91860 0.91857 0.93532 0.93524 0.96609 0.96613 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 7.61 37.16 0.28 -0.60 16 2 C -0.07 -0.50 0.56 -154.51 -0.09 -0.59 16 3 C -0.14 -1.03 8.32 37.16 0.31 -0.72 16 4 C -0.11 -0.69 4.73 -26.73 -0.13 -0.81 16 5 C -0.12 -0.78 5.65 -26.73 -0.15 -0.93 16 6 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 7 C -0.13 -1.24 5.22 -26.73 -0.14 -1.38 16 8 C 0.16 1.52 1.59 -67.93 -0.11 1.41 16 9 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 10 N -0.73 -7.48 4.30 -53.80 -0.23 -7.71 16 11 C 0.51 7.22 7.79 -10.99 -0.09 7.13 16 12 O -0.54 -9.85 15.64 5.56 0.09 -9.77 16 13 C -0.14 -1.90 5.70 -27.89 -0.16 -2.06 16 14 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 15 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 16 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 17 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.83 13.29 55.43 0.74 -27.10 16 21 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.05 0.30 6.51 -51.93 -0.34 -0.03 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.40 4.81 -51.93 -0.25 0.15 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.44 7.45 -51.93 -0.39 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 39 H 0.40 3.07 6.65 -40.82 -0.27 2.80 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -33.16 366.61 -9.17 -42.33 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -9.03 Total: -2.72 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.23 Total: -17.65 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.50 Total: -34.80 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.16 -9.17 -42.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161302.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.555 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds