Wall clock time and date at job start Tue Mar 31 2020 05:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47295 * 2 1 4 4 C 1.53000 * 109.47227 * 240.00247 * 2 1 3 5 5 C 1.53002 * 109.47085 * 299.99874 * 4 2 1 6 6 C 1.53000 * 109.47269 * 300.00421 * 5 4 2 7 7 C 1.53000 * 109.47411 * 59.99779 * 6 5 4 8 8 C 1.52997 * 109.47272 * 120.00113 * 2 1 3 9 9 H 1.08995 * 109.47843 * 180.02562 * 8 2 1 10 10 N 1.46504 * 109.47143 * 300.00149 * 8 2 1 11 11 C 1.34774 * 120.00240 * 204.99720 * 10 8 2 12 12 O 1.21283 * 119.99643 * 359.97438 * 11 10 8 13 13 C 1.50694 * 119.99993 * 179.97438 * 11 10 8 14 14 C 1.53001 * 109.47168 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47355 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47355 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.08998 * 109.46893 * 300.00204 * 1 2 3 26 26 H 1.09006 * 109.47051 * 59.99802 * 1 2 3 27 27 H 1.08993 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47248 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47450 * 300.00080 * 3 2 1 30 30 H 1.08998 * 109.47317 * 60.00055 * 3 2 1 31 31 H 1.09002 * 109.47186 * 180.02562 * 4 2 1 32 32 H 1.08992 * 109.47631 * 59.99826 * 4 2 1 33 33 H 1.08998 * 109.47621 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.46984 * 59.99710 * 5 4 2 35 35 H 1.09002 * 109.47270 * 299.99433 * 6 5 4 36 36 H 1.09002 * 109.47190 * 179.97438 * 6 5 4 37 37 H 1.08993 * 109.47122 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.47186 * 59.99603 * 7 6 5 39 39 H 0.97005 * 119.99919 * 24.99503 * 10 8 2 40 40 H 1.08994 * 109.47211 * 59.99931 * 13 11 10 41 41 H 1.09003 * 109.47615 * 299.99937 * 13 11 10 42 42 H 1.09002 * 109.46926 * 60.00175 * 14 13 11 43 43 H 1.08992 * 109.47494 * 300.00169 * 14 13 11 44 44 H 1.09002 * 109.46807 * 60.00291 * 15 14 13 45 45 H 1.08998 * 109.47285 * 299.99893 * 15 14 13 46 46 H 1.09007 * 109.46922 * 59.99890 * 16 15 14 47 47 H 1.09003 * 109.46836 * 300.00646 * 16 15 14 48 48 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2492 8 6 2.0400 -0.7213 1.2492 9 1 3.1300 -0.7209 1.2495 10 7 1.5516 -0.0307 2.4454 11 6 2.2284 -0.1335 3.6064 12 8 3.2415 -0.7981 3.6609 13 6 1.7263 0.5773 4.8367 14 6 2.6699 0.2975 6.0081 15 6 2.1606 1.0197 7.2571 16 6 3.1038 0.7394 8.4287 17 6 2.6017 1.4502 9.6589 18 1 1.6999 2.0424 9.6103 19 6 3.2938 1.3446 10.8468 20 7 4.3918 0.6231 10.9062 21 14 2.6718 2.2263 12.3716 22 1 3.5873 1.9541 13.5089 23 1 2.6236 3.6878 12.1133 24 1 1.3099 1.7374 12.7052 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -0.2074 -2.1392 33 1 1.8930 -2.6774 -2.1395 34 1 0.4400 -2.1637 -1.2493 35 1 3.1300 -2.8851 0.0000 36 1 1.6762 -3.9125 0.0001 37 1 1.8936 -2.6774 2.1391 38 1 0.4399 -2.1637 1.2492 39 1 0.7412 0.5006 2.4019 40 1 0.7270 0.2177 5.0817 41 1 1.6901 1.6502 4.6472 42 1 3.6695 0.6569 5.7633 43 1 2.7058 -0.7752 6.1976 44 1 1.1609 0.6607 7.5020 45 1 2.1251 2.0925 7.0674 46 1 4.1037 1.0980 8.1840 47 1 3.1389 -0.3335 8.6181 48 1 4.8789 0.5492 11.7418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588161302.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:10 Heat of formation + Delta-G solvation = -111.112675 kcal Electronic energy + Delta-G solvation = -22403.073590 eV Core-core repulsion = 19261.847179 eV Total energy + Delta-G solvation = -3141.226411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52531 -39.75837 -36.64313 -35.22943 -34.60103 -34.05747 -31.76297 -30.38015 -28.24974 -27.69399 -26.85997 -24.53303 -23.20677 -22.03331 -21.71868 -21.20192 -19.51780 -18.41975 -17.87199 -17.20722 -16.85634 -16.51082 -15.89551 -15.69013 -15.47703 -15.21410 -14.81452 -14.53527 -14.39197 -13.99435 -13.86193 -13.68337 -13.56466 -13.24594 -12.93507 -12.80709 -12.79410 -12.51894 -12.37898 -12.34922 -12.16510 -12.13213 -12.09624 -11.85642 -11.38439 -11.36661 -11.28940 -11.18314 -11.14134 -11.07344 -10.63627 -10.54707 -9.96768 -8.18765 -6.31251 1.40028 1.44382 1.52218 1.69157 2.24177 2.42188 3.13714 3.57526 3.70769 3.85832 3.88328 4.05982 4.10754 4.14535 4.23800 4.35422 4.41855 4.43870 4.52498 4.67031 4.68772 4.73771 4.80995 4.83497 4.84716 4.88035 4.94527 5.05202 5.09150 5.10350 5.16132 5.18999 5.21240 5.25069 5.33044 5.35995 5.37472 5.41569 5.44679 5.55204 5.59884 5.66140 5.77614 5.87624 6.24971 6.60887 6.87095 7.33205 7.38350 8.93426 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.041022 B = 0.002505 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.395509 B =11176.508142 C =11459.230742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.128 4.128 8 C 0.156 3.844 9 H 0.053 0.947 10 N -0.712 5.712 11 C 0.510 3.490 12 O -0.589 6.589 13 C -0.129 4.129 14 C -0.095 4.095 15 C -0.095 4.095 16 C 0.019 3.981 17 C -0.543 4.543 18 H 0.067 0.933 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.285 1.285 23 H -0.264 1.264 24 H -0.264 1.264 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.413 0.587 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.061 0.939 45 H 0.061 0.939 46 H -0.016 1.016 47 H -0.016 1.016 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.311 -0.867 -29.173 31.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.200 4.200 4 C -0.144 4.144 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.167 4.167 8 C 0.051 3.949 9 H 0.071 0.929 10 N -0.365 5.365 11 C 0.298 3.702 12 O -0.469 6.469 13 C -0.169 4.169 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.018 4.018 17 C -0.581 4.581 18 H 0.085 0.915 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.794 3.206 22 H -0.211 1.211 23 H -0.188 1.188 24 H -0.189 1.189 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.252 0.748 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.002 0.998 47 H 0.002 0.998 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.472 -1.378 -29.034 31.248 hybrid contribution 0.310 0.207 1.247 1.302 sum -11.162 -1.170 -27.786 29.967 Atomic orbital electron populations 1.22009 0.92759 1.02822 1.02721 1.20744 0.97219 0.95181 0.93282 1.21878 1.00418 0.95059 1.02619 1.21588 1.00309 0.95670 0.96825 1.21591 1.01662 0.95099 0.97117 1.21492 1.00295 0.99398 0.94284 1.21923 1.01761 0.95019 0.97967 1.20952 0.97982 0.91686 0.84300 0.92853 1.46054 1.29388 1.52191 1.08861 1.21179 0.83055 0.80254 0.85691 1.90689 1.27263 1.43169 1.85790 1.21675 1.01458 1.02805 0.90912 1.21233 0.98312 0.99703 0.94100 1.21445 0.98883 0.99642 0.93282 1.19053 0.94352 0.94652 0.93767 1.21730 1.10245 1.30466 0.95617 0.91527 1.26118 0.95075 0.96289 1.02988 1.70133 1.18314 1.41745 1.27724 0.85420 0.78349 0.79173 0.77614 1.21065 1.18850 1.18861 0.92187 0.90947 0.91469 0.94033 0.90852 0.92439 0.92800 0.89836 0.90972 0.90421 0.93200 0.91166 0.94640 0.90018 0.74836 0.86462 0.86459 0.94030 0.94032 0.92062 0.92048 0.99800 0.99806 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 7.61 71.98 0.55 -0.71 16 2 C -0.06 -0.79 0.56 -52.18 -0.03 -0.82 16 3 C -0.14 -1.81 8.32 71.98 0.60 -1.22 16 4 C -0.11 -1.18 4.73 30.59 0.14 -1.04 16 5 C -0.12 -1.25 5.65 30.59 0.17 -1.08 16 6 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 7 C -0.13 -2.40 5.22 30.60 0.16 -2.24 16 8 C 0.16 2.98 1.59 44.99 0.07 3.05 16 9 H 0.05 1.39 7.58 -2.39 -0.02 1.37 16 10 N -0.71 -13.77 4.30 -442.53 -1.90 -15.68 16 11 C 0.51 14.34 7.79 87.66 0.68 15.03 16 12 O -0.59 -22.84 15.64 -3.04 -0.05 -22.89 16 13 C -0.13 -3.30 5.70 29.85 0.17 -3.13 16 14 C -0.10 -3.56 4.50 30.59 0.14 -3.42 16 15 C -0.10 -3.97 5.15 30.59 0.16 -3.81 16 16 C 0.02 1.06 4.97 29.85 0.15 1.21 16 17 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 18 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 19 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 20 N -0.94 -59.86 13.29 21.45 0.28 -59.57 16 21 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 25 H 0.06 0.45 6.51 -2.39 -0.02 0.44 16 26 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 27 H 0.07 0.58 4.81 -2.39 -0.01 0.57 16 28 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.74 7.45 -2.39 -0.02 0.72 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.68 6.43 -2.39 -0.02 0.66 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 1.25 6.43 -2.39 -0.02 1.24 16 39 H 0.41 5.28 6.65 -92.70 -0.62 4.66 16 40 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 43 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 44 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 46 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 47 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 48 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -75.57 366.61 4.49 -71.08 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.29 Total: 11.26 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 3.84 Total: -31.43 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -1.62 Total: -75.25 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -75.57 4.49 -71.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161302.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.028 kcal (2) G-P(sol) polarization free energy of solvation -75.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds