Wall clock time and date at job start Tue Mar 31 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46760 * 2 1 4 4 C 1.52998 * 110.01728 * 304.19718 * 3 2 1 5 5 N 1.46499 * 109.47539 * 304.96226 * 4 3 2 6 6 C 1.34775 * 120.00351 * 174.69688 * 5 4 3 7 7 O 1.21284 * 119.99917 * 0.28047 * 6 5 4 8 8 C 1.50694 * 120.00150 * 180.27437 * 6 5 4 9 9 C 1.52994 * 109.47422 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47331 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.47287 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47379 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99907 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00219 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99796 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00170 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47080 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.46904 * 120.00370 * 16 14 12 19 19 H 1.48501 * 109.47388 * 240.00411 * 16 14 12 20 20 C 1.54261 * 110.03609 * 65.59210 * 3 2 1 21 21 C 1.54967 * 104.16363 * 95.75126 * 20 3 2 22 22 C 1.54893 * 102.77334 * 37.88852 * 21 20 3 23 23 C 1.53875 * 110.03005 * 182.81096 * 3 2 1 24 24 H 1.08995 * 109.47331 * 295.32765 * 1 2 3 25 25 H 1.08993 * 109.47004 * 55.33430 * 1 2 3 26 26 H 1.09005 * 109.46939 * 175.33455 * 1 2 3 27 27 H 1.08994 * 109.47374 * 240.00124 * 2 1 3 28 28 H 1.08999 * 109.47040 * 119.99667 * 2 1 3 29 29 H 1.08996 * 109.47238 * 184.95841 * 4 3 2 30 30 H 1.09002 * 109.46907 * 64.96185 * 4 3 2 31 31 H 0.97003 * 119.99426 * 354.98289 * 5 4 3 32 32 H 1.09009 * 109.47428 * 300.00648 * 8 6 5 33 33 H 1.09005 * 109.47176 * 60.00199 * 8 6 5 34 34 H 1.09001 * 109.47557 * 300.00427 * 9 8 6 35 35 H 1.09000 * 109.46909 * 60.00094 * 9 8 6 36 36 H 1.08995 * 109.47463 * 300.00029 * 10 9 8 37 37 H 1.09000 * 109.47035 * 60.00187 * 10 9 8 38 38 H 1.08995 * 109.47222 * 300.00580 * 11 10 9 39 39 H 1.09000 * 109.46601 * 60.00325 * 11 10 9 40 40 H 0.97003 * 120.00080 * 180.02562 * 15 14 12 41 41 H 1.09004 * 110.48879 * 214.40491 * 20 3 2 42 42 H 1.09004 * 110.48670 * 337.04389 * 20 3 2 43 43 H 1.08996 * 110.72029 * 279.57856 * 21 20 3 44 44 H 1.08999 * 110.92339 * 156.29712 * 21 20 3 45 45 H 1.09002 * 110.48664 * 203.40235 * 22 21 20 46 46 H 1.08999 * 110.48628 * 80.76003 * 22 21 20 47 47 H 1.08997 * 110.03393 * 359.94765 * 23 3 2 48 48 H 1.09001 * 110.03360 * 121.38409 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4527 2.2056 -1.1890 5 7 1.7565 1.4868 -2.4289 6 6 1.2460 1.9169 -3.5997 7 8 0.5392 2.9021 -3.6276 8 6 1.5535 1.1739 -4.8741 9 6 0.8573 1.8650 -6.0481 10 6 1.1700 1.1109 -7.3421 11 6 0.4732 1.8017 -8.5162 12 6 0.7807 1.0587 -9.7906 13 1 1.4099 0.1812 -9.7657 14 6 0.2589 1.4990 -10.9885 15 7 -0.5068 2.5678 -11.0188 16 14 0.6395 0.5776 -12.5681 17 1 1.5164 -0.5821 -12.2657 18 1 -0.6261 0.0951 -13.1769 19 1 1.3303 1.4868 -13.5175 20 6 1.6514 2.1404 1.3197 21 6 2.9067 1.9845 2.2149 22 6 4.0699 2.1658 1.2083 23 6 3.5770 1.4582 -0.0709 24 1 -0.3634 0.4396 0.9288 25 1 -0.3633 0.5845 -0.8452 26 1 -0.3633 -1.0243 -0.0836 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8888 3.2036 -1.2314 30 1 0.3721 2.2860 -1.0712 31 1 2.3218 0.6988 -2.4065 32 1 2.6306 1.1703 -5.0419 33 1 1.1953 0.1476 -4.7919 34 1 -0.2198 1.8689 -5.8807 35 1 1.2159 2.8910 -6.1302 36 1 2.2471 1.1075 -7.5095 37 1 0.8118 0.0848 -7.2603 38 1 -0.6038 1.8048 -8.3486 39 1 0.8311 2.8280 -8.5981 40 1 -0.8743 2.8775 -11.8615 41 1 1.4362 3.1946 1.1449 42 1 0.7935 1.6454 1.7749 43 1 2.9377 0.9929 2.6664 44 1 2.9360 2.7579 2.9824 45 1 4.9761 1.6896 1.5826 46 1 4.2458 3.2240 1.0151 47 1 3.9596 0.4382 -0.1044 48 1 3.9045 2.0095 -0.9523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588161306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:20 Heat of formation + Delta-G solvation = -91.678461 kcal Electronic energy + Delta-G solvation = -22033.445342 eV Core-core repulsion = 18893.061661 eV Total energy + Delta-G solvation = -3140.383681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37622 -38.93664 -35.03821 -34.62052 -32.97728 -32.55663 -30.02267 -29.14804 -28.71307 -26.08456 -24.80194 -23.34737 -22.14801 -20.91805 -20.10868 -19.93100 -18.84460 -16.99150 -16.34821 -16.18328 -15.80037 -15.64926 -15.27576 -14.75782 -14.42542 -14.13773 -13.73504 -13.70142 -13.38081 -12.95888 -12.62784 -12.59152 -12.13822 -11.92944 -11.86360 -11.64336 -11.55401 -11.47446 -11.32191 -10.97489 -10.93889 -10.88341 -10.76559 -10.65199 -10.49892 -10.46087 -10.37483 -9.73980 -9.58016 -9.18386 -9.06526 -8.94001 -8.28582 -5.93154 -3.95480 2.80895 3.20858 3.34531 3.41608 3.45674 4.13622 4.15455 4.25308 4.50821 4.77042 4.79437 4.84363 4.89617 5.00916 5.07726 5.21136 5.28153 5.29740 5.35121 5.37736 5.41383 5.43057 5.48297 5.53844 5.59371 5.63127 5.67887 5.77058 5.78061 5.86977 5.92561 5.96022 6.02616 6.11665 6.18403 6.35026 6.41497 6.59461 6.88294 7.06422 7.23626 7.51631 7.77103 7.93265 8.08727 8.34760 8.50593 9.12550 9.68052 11.18230 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040210 B = 0.002333 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.169882 B =11997.622224 C =12038.438272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C -0.073 4.073 4 C 0.130 3.870 5 N -0.735 5.735 6 C 0.510 3.490 7 O -0.537 6.537 8 C -0.139 4.139 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.054 3.946 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.121 4.121 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.951 -4.722 29.030 30.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.146 4.146 3 C -0.074 4.074 4 C 0.006 3.994 5 N -0.389 5.389 6 C 0.298 3.702 7 O -0.413 6.413 8 C -0.179 4.179 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.018 4.018 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.147 4.147 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.153 4.153 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.158 4.158 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.331 -3.884 28.879 30.047 hybrid contribution 0.452 -0.838 -0.911 1.318 sum 7.783 -4.723 27.968 29.412 Atomic orbital electron populations 1.21910 0.95611 1.01847 1.02238 1.21583 0.96252 0.94950 1.01833 1.21489 0.95329 0.95765 0.94789 1.21445 1.00621 0.94962 0.82383 1.46121 1.53442 1.32368 1.06983 1.21077 0.79110 0.84864 0.85182 1.90705 1.37208 1.26560 1.86839 1.21788 1.02969 1.00521 0.92621 1.21440 1.00346 0.99565 0.92736 1.21648 1.00087 0.98693 0.94344 1.19104 0.95690 0.95760 0.91242 1.21324 1.30126 1.11911 0.92340 0.92716 1.25050 0.95305 0.95148 0.99156 1.69988 1.33672 1.23709 1.26113 0.86555 0.78042 0.79852 0.83655 1.19791 1.21068 1.21062 1.22470 0.98123 1.00676 0.94003 1.22488 0.94651 1.01548 0.97432 1.22346 0.97966 1.00665 0.95208 1.22331 0.93901 1.01043 0.98540 0.92584 0.92014 0.92771 0.91957 0.91716 0.91949 0.91145 0.76741 0.89272 0.89269 0.91852 0.91858 0.93514 0.93519 0.96597 0.96593 0.93118 0.91207 0.90947 0.91586 0.91615 0.91775 0.91625 0.91497 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.35 37.16 0.35 -0.80 16 2 C -0.11 -0.69 4.44 -26.73 -0.12 -0.81 16 3 C -0.07 -0.49 0.41 -153.40 -0.06 -0.56 16 4 C 0.13 1.23 3.60 -4.04 -0.01 1.22 16 5 N -0.74 -7.42 4.97 -60.30 -0.30 -7.72 16 6 C 0.51 7.22 7.83 -10.99 -0.09 7.14 16 7 O -0.54 -10.01 15.98 5.55 0.09 -9.92 16 8 C -0.14 -1.89 5.70 -27.89 -0.16 -2.05 16 9 C -0.10 -1.89 4.50 -26.74 -0.12 -2.01 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 11 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 12 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 13 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 16 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 C -0.11 -0.72 5.74 -25.03 -0.14 -0.87 16 21 C -0.12 -0.69 6.91 -24.69 -0.17 -0.86 16 22 C -0.12 -0.73 6.83 -25.07 -0.17 -0.90 16 23 C -0.12 -0.76 5.71 -25.61 -0.15 -0.91 16 24 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 25 H 0.06 0.55 6.25 -51.93 -0.32 0.23 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.38 6.86 -51.93 -0.36 0.03 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.76 6.59 -51.93 -0.34 0.42 16 31 H 0.40 3.02 6.98 -40.82 -0.28 2.74 16 32 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.07 0.47 7.85 -51.93 -0.41 0.06 16 42 H 0.07 0.43 6.17 -51.93 -0.32 0.11 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.38 7.67 -51.93 -0.40 -0.02 16 48 H 0.07 0.50 7.58 -51.93 -0.39 0.10 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -33.37 371.40 -9.48 -42.85 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -9.05 Total: -3.41 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -1.53 Total: -17.41 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.44 Total: -34.78 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.37 -9.48 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.831 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds