Wall clock time and date at job start Tue Mar 31 2020 05:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46760 * 2 1 4 4 C 1.52998 * 110.01728 * 304.19718 * 3 2 1 5 5 N 1.46499 * 109.47539 * 304.96226 * 4 3 2 6 6 C 1.34775 * 120.00351 * 174.69688 * 5 4 3 7 7 O 1.21284 * 119.99917 * 0.28047 * 6 5 4 8 8 C 1.50694 * 120.00150 * 180.27437 * 6 5 4 9 9 C 1.52994 * 109.47422 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47331 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.47287 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47379 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99907 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00219 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99796 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00170 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47080 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.46904 * 120.00370 * 16 14 12 19 19 H 1.48501 * 109.47388 * 240.00411 * 16 14 12 20 20 C 1.54261 * 110.03609 * 65.59210 * 3 2 1 21 21 C 1.54967 * 104.16363 * 95.75126 * 20 3 2 22 22 C 1.54893 * 102.77334 * 37.88852 * 21 20 3 23 23 C 1.53875 * 110.03005 * 182.81096 * 3 2 1 24 24 H 1.08995 * 109.47331 * 295.32765 * 1 2 3 25 25 H 1.08993 * 109.47004 * 55.33430 * 1 2 3 26 26 H 1.09005 * 109.46939 * 175.33455 * 1 2 3 27 27 H 1.08994 * 109.47374 * 240.00124 * 2 1 3 28 28 H 1.08999 * 109.47040 * 119.99667 * 2 1 3 29 29 H 1.08996 * 109.47238 * 184.95841 * 4 3 2 30 30 H 1.09002 * 109.46907 * 64.96185 * 4 3 2 31 31 H 0.97003 * 119.99426 * 354.98289 * 5 4 3 32 32 H 1.09009 * 109.47428 * 300.00648 * 8 6 5 33 33 H 1.09005 * 109.47176 * 60.00199 * 8 6 5 34 34 H 1.09001 * 109.47557 * 300.00427 * 9 8 6 35 35 H 1.09000 * 109.46909 * 60.00094 * 9 8 6 36 36 H 1.08995 * 109.47463 * 300.00029 * 10 9 8 37 37 H 1.09000 * 109.47035 * 60.00187 * 10 9 8 38 38 H 1.08995 * 109.47222 * 300.00580 * 11 10 9 39 39 H 1.09000 * 109.46601 * 60.00325 * 11 10 9 40 40 H 0.97003 * 120.00080 * 180.02562 * 15 14 12 41 41 H 1.09004 * 110.48879 * 214.40491 * 20 3 2 42 42 H 1.09004 * 110.48670 * 337.04389 * 20 3 2 43 43 H 1.08996 * 110.72029 * 279.57856 * 21 20 3 44 44 H 1.08999 * 110.92339 * 156.29712 * 21 20 3 45 45 H 1.09002 * 110.48664 * 203.40235 * 22 21 20 46 46 H 1.08999 * 110.48628 * 80.76003 * 22 21 20 47 47 H 1.08997 * 110.03393 * 359.94765 * 23 3 2 48 48 H 1.09001 * 110.03360 * 121.38409 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4527 2.2056 -1.1890 5 7 1.7565 1.4868 -2.4289 6 6 1.2460 1.9169 -3.5997 7 8 0.5392 2.9021 -3.6276 8 6 1.5535 1.1739 -4.8741 9 6 0.8573 1.8650 -6.0481 10 6 1.1700 1.1109 -7.3421 11 6 0.4732 1.8017 -8.5162 12 6 0.7807 1.0587 -9.7906 13 1 1.4099 0.1812 -9.7657 14 6 0.2589 1.4990 -10.9885 15 7 -0.5068 2.5678 -11.0188 16 14 0.6395 0.5776 -12.5681 17 1 1.5164 -0.5821 -12.2657 18 1 -0.6261 0.0951 -13.1769 19 1 1.3303 1.4868 -13.5175 20 6 1.6514 2.1404 1.3197 21 6 2.9067 1.9845 2.2149 22 6 4.0699 2.1658 1.2083 23 6 3.5770 1.4582 -0.0709 24 1 -0.3634 0.4396 0.9288 25 1 -0.3633 0.5845 -0.8452 26 1 -0.3633 -1.0243 -0.0836 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8888 3.2036 -1.2314 30 1 0.3721 2.2860 -1.0712 31 1 2.3218 0.6988 -2.4065 32 1 2.6306 1.1703 -5.0419 33 1 1.1953 0.1476 -4.7919 34 1 -0.2198 1.8689 -5.8807 35 1 1.2159 2.8910 -6.1302 36 1 2.2471 1.1075 -7.5095 37 1 0.8118 0.0848 -7.2603 38 1 -0.6038 1.8048 -8.3486 39 1 0.8311 2.8280 -8.5981 40 1 -0.8743 2.8775 -11.8615 41 1 1.4362 3.1946 1.1449 42 1 0.7935 1.6454 1.7749 43 1 2.9377 0.9929 2.6664 44 1 2.9360 2.7579 2.9824 45 1 4.9761 1.6896 1.5826 46 1 4.2458 3.2240 1.0151 47 1 3.9596 0.4382 -0.1044 48 1 3.9045 2.0095 -0.9523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588161306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:19 Heat of formation + Delta-G solvation = -110.984092 kcal Electronic energy + Delta-G solvation = -22034.282496 eV Core-core repulsion = 18893.061661 eV Total energy + Delta-G solvation = -3141.220835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20932 -39.84631 -36.66536 -35.61075 -34.60363 -33.62550 -31.60172 -29.83713 -29.43462 -27.57885 -25.94133 -24.21395 -23.54886 -21.82760 -21.47559 -21.02418 -19.47574 -18.42182 -17.95827 -17.12393 -16.85905 -16.60091 -16.45246 -16.06066 -15.63249 -15.06821 -14.83985 -14.54437 -14.42252 -14.07029 -13.80202 -13.58466 -13.52172 -13.27984 -13.17616 -12.83457 -12.60462 -12.40586 -12.30196 -12.14771 -12.13196 -11.94310 -11.80736 -11.45913 -11.38244 -11.37609 -11.35598 -11.33642 -11.22022 -11.14093 -10.71909 -10.55844 -10.04694 -8.18768 -6.30955 1.40362 1.41495 1.54997 1.68537 2.25499 2.42211 3.13897 3.57802 3.60749 3.71820 3.89482 4.07596 4.15117 4.21072 4.30739 4.33415 4.36574 4.55837 4.61653 4.64343 4.69286 4.70157 4.79366 4.81274 4.84929 4.85944 4.90059 4.99634 5.09038 5.10626 5.15809 5.19733 5.24029 5.29782 5.31793 5.33750 5.37578 5.48904 5.49759 5.51522 5.56601 5.58878 5.78217 5.88207 6.25381 6.59138 6.87767 7.31170 7.38672 8.93767 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040210 B = 0.002333 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.169882 B =11997.622224 C =12038.438272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.064 4.064 4 C 0.131 3.869 5 N -0.713 5.713 6 C 0.509 3.491 7 O -0.591 6.591 8 C -0.129 4.129 9 C -0.096 4.096 10 C -0.095 4.095 11 C 0.018 3.982 12 C -0.540 4.540 13 H 0.066 0.934 14 C -0.009 4.009 15 N -0.938 5.938 16 Si 0.971 3.029 17 H -0.257 1.257 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.119 4.119 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.414 0.586 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.061 0.939 38 H -0.016 1.016 39 H -0.016 1.016 40 H 0.263 0.737 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.080 0.920 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.895 -7.368 29.930 32.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C -0.065 4.065 4 C 0.007 3.993 5 N -0.366 5.366 6 C 0.297 3.703 7 O -0.472 6.472 8 C -0.168 4.168 9 C -0.134 4.134 10 C -0.133 4.133 11 C -0.019 4.019 12 C -0.578 4.578 13 H 0.085 0.915 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.795 3.205 17 H -0.180 1.180 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.163 4.163 23 C -0.157 4.157 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.252 0.748 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.099 0.901 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.315 -6.574 29.820 31.925 hybrid contribution -0.187 0.038 -1.143 1.159 sum 9.128 -6.536 28.677 30.796 Atomic orbital electron populations 1.21895 0.96421 1.01689 1.01544 1.21589 0.95438 0.94447 1.02841 1.21430 0.95712 0.95812 0.93513 1.21477 0.99836 0.94898 0.83110 1.45914 1.52244 1.32337 1.06092 1.21188 0.78581 0.84167 0.86354 1.90694 1.39876 1.29008 1.87615 1.21670 1.04112 1.00969 0.90055 1.21237 0.99583 0.98736 0.93836 1.21445 1.00106 0.98809 0.92900 1.19068 0.94282 0.94754 0.93832 1.21780 1.30299 1.12399 0.93290 0.91537 1.26116 0.94906 0.96049 1.03496 1.70144 1.34831 1.25557 1.27372 0.85315 0.78175 0.78717 0.78314 1.18044 1.20472 1.20463 1.22487 0.98884 1.00132 0.93978 1.22477 0.93756 1.02229 0.97236 1.22357 0.98515 1.00300 0.95105 1.22325 0.93155 1.01776 0.98400 0.92140 0.94182 0.92352 0.91336 0.90268 0.93344 0.92702 0.74783 0.86414 0.86411 0.93989 0.94004 0.92045 0.92047 0.99763 0.99765 0.92861 0.92162 0.90497 0.90659 0.91235 0.90812 0.92381 0.90089 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.35 71.98 0.67 -1.40 16 2 C -0.11 -1.09 4.44 30.59 0.14 -0.95 16 3 C -0.06 -0.77 0.41 -51.46 -0.02 -0.79 16 4 C 0.13 2.45 3.60 86.38 0.31 2.76 16 5 N -0.71 -13.49 4.97 -463.07 -2.30 -15.79 16 6 C 0.51 14.15 7.83 87.66 0.69 14.84 16 7 O -0.59 -22.84 15.98 -3.04 -0.05 -22.89 16 8 C -0.13 -3.24 5.70 29.84 0.17 -3.07 16 9 C -0.10 -3.55 4.50 30.59 0.14 -3.41 16 10 C -0.10 -3.95 5.15 30.60 0.16 -3.79 16 11 C 0.02 0.99 4.97 29.85 0.15 1.14 16 12 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 13 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 14 C -0.01 -0.52 5.46 84.65 0.46 -0.05 16 15 N -0.94 -59.67 13.29 21.45 0.28 -59.38 16 16 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 C -0.12 -1.33 5.74 31.69 0.18 -1.15 16 21 C -0.12 -1.09 6.91 31.91 0.22 -0.87 16 22 C -0.13 -1.24 6.83 31.67 0.22 -1.02 16 23 C -0.12 -1.25 5.71 31.32 0.18 -1.07 16 24 H 0.06 0.72 6.54 -2.39 -0.02 0.71 16 25 H 0.04 0.70 6.25 -2.39 -0.01 0.69 16 26 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.07 0.63 6.86 -2.39 -0.02 0.61 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.23 6.59 -2.39 -0.02 1.22 16 31 H 0.41 5.17 6.98 -92.71 -0.65 4.52 16 32 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 35 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 38 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 39 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 40 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.06 0.80 7.85 -2.39 -0.02 0.78 16 42 H 0.08 0.81 6.17 -2.39 -0.01 0.79 16 43 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.08 0.65 7.67 -2.39 -0.02 0.63 16 48 H 0.06 0.75 7.58 -2.39 -0.02 0.74 16 Total: -1.00 -74.97 371.40 4.11 -70.86 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.26 Total: 10.23 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 3.89 Total: -30.23 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -2.02 Total: -75.17 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.97 4.11 -70.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.126 kcal (2) G-P(sol) polarization free energy of solvation -74.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds