Wall clock time and date at job start Tue Mar 31 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46917 * 2 1 4 4 C 1.52992 * 110.30793 * 302.64252 * 3 2 1 5 5 C 1.53001 * 109.47044 * 301.72074 * 4 3 2 6 6 C 1.54592 * 110.32064 * 180.37441 * 3 2 1 7 7 C 1.54394 * 104.81374 * 241.11586 * 6 3 2 8 8 N 1.48150 * 104.72180 * 23.88768 * 7 6 3 9 9 C 1.34777 * 127.83335 * 140.35769 * 8 7 6 10 10 O 1.21279 * 119.99662 * 179.97438 * 9 8 7 11 11 C 1.50697 * 120.00267 * 359.97438 * 9 8 7 12 12 C 1.53000 * 109.47125 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47209 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47209 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47125 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99793 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99968 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00142 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00021 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47148 * 89.99922 * 19 17 15 21 21 H 1.48500 * 109.47213 * 210.00273 * 19 17 15 22 22 H 1.48501 * 109.47062 * 330.00217 * 19 17 15 23 23 C 1.48139 * 104.32483 * 320.36415 * 8 7 6 24 24 H 1.09004 * 109.47675 * 62.86518 * 1 2 3 25 25 H 1.08999 * 109.47117 * 182.86641 * 1 2 3 26 26 H 1.09002 * 109.47250 * 302.86597 * 1 2 3 27 27 H 1.08996 * 109.46930 * 240.00797 * 2 1 3 28 28 H 1.08999 * 109.47223 * 120.00248 * 2 1 3 29 29 H 1.08997 * 109.47824 * 61.72154 * 4 3 2 30 30 H 1.09003 * 109.47137 * 181.72639 * 4 3 2 31 31 H 1.08999 * 109.47035 * 179.81006 * 5 4 3 32 32 H 1.08997 * 109.47278 * 299.80961 * 5 4 3 33 33 H 1.09000 * 109.47051 * 59.80625 * 5 4 3 34 34 H 1.08988 * 110.44095 * 122.27277 * 6 3 2 35 35 H 1.09004 * 110.38694 * 359.91753 * 6 3 2 36 36 H 1.09001 * 110.40378 * 265.04961 * 7 6 3 37 37 H 1.08993 * 110.41135 * 142.73541 * 7 6 3 38 38 H 1.09000 * 109.47386 * 300.00208 * 11 9 8 39 39 H 1.08999 * 109.46727 * 60.00028 * 11 9 8 40 40 H 1.09006 * 109.46886 * 300.00042 * 12 11 9 41 41 H 1.09003 * 109.46995 * 59.99951 * 12 11 9 42 42 H 1.08997 * 109.46663 * 300.00178 * 13 12 11 43 43 H 1.08999 * 109.46862 * 59.99921 * 13 12 11 44 44 H 1.08998 * 109.46547 * 299.99741 * 14 13 12 45 45 H 1.09003 * 109.46995 * 59.99734 * 14 13 12 46 46 H 0.96993 * 119.99981 * 179.97438 * 18 17 15 47 47 H 1.08995 * 110.40916 * 158.37196 * 23 8 7 48 48 H 1.09006 * 110.40442 * 280.79583 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4872 2.2011 -1.2082 5 6 1.9062 1.4863 -2.4945 6 6 3.5856 1.4655 -0.0095 7 6 3.9777 2.1894 1.2967 8 7 2.8155 1.9997 2.1957 9 6 2.8271 1.7446 3.5191 10 8 1.7821 1.6144 4.1206 11 6 4.1384 1.6213 4.2513 12 6 3.8717 1.3331 5.7300 13 6 5.2031 1.2084 6.4736 14 6 4.9364 0.9196 7.9522 15 6 6.2477 0.7963 8.6844 16 1 7.1783 0.9127 8.1488 17 6 6.2594 0.5359 10.0383 18 7 5.1263 0.3946 10.6907 19 14 7.8849 0.3836 10.9461 20 1 8.2966 1.7180 11.4512 21 1 7.7280 -0.5515 12.0890 22 1 8.9224 -0.1366 10.0197 23 6 1.6380 2.1538 1.3101 24 1 -0.3634 0.4687 -0.9146 25 1 -0.3633 -1.0264 0.0514 26 1 -0.3634 0.5577 0.8632 27 1 1.8932 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.3993 2.2352 -1.1494 30 1 1.8829 3.2168 -1.2116 31 1 1.5096 2.0248 -3.3551 32 1 2.9940 1.4552 -2.5551 33 1 1.5134 0.4695 -2.4895 34 1 3.9528 2.0183 -0.8740 35 1 3.9805 0.4495 -0.0126 36 1 4.1432 3.2502 1.1082 37 1 4.8703 1.7372 1.7287 38 1 4.7196 0.8057 3.8209 39 1 4.6957 2.5533 4.1579 40 1 3.2907 2.1490 6.1601 41 1 3.3141 0.4011 5.8238 42 1 5.7844 0.3929 6.0435 43 1 5.7602 2.1406 6.3798 44 1 4.3549 1.7350 8.3824 45 1 4.3793 -0.0127 8.0456 46 1 5.1345 0.2110 11.6430 47 1 0.7651 1.6729 1.7513 48 1 1.4381 3.2090 1.1238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588161313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:16 Heat of formation + Delta-G solvation = -75.537314 kcal Electronic energy + Delta-G solvation = -22300.503251 eV Core-core repulsion = 19160.819503 eV Total energy + Delta-G solvation = -3139.683748 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.52914 -38.55910 -35.10413 -34.83830 -32.58524 -31.71728 -30.48456 -29.76525 -28.33987 -25.84514 -24.61245 -23.65991 -22.60129 -21.91105 -19.97263 -19.16317 -18.64314 -16.95002 -16.52753 -16.13856 -15.61780 -15.38962 -15.27243 -14.41458 -14.26584 -14.10432 -13.91536 -13.36493 -13.15314 -13.07263 -12.58555 -12.45467 -12.34849 -12.17528 -11.97395 -11.84001 -11.66384 -11.56789 -11.47997 -11.36379 -10.96120 -10.75193 -10.62063 -10.59933 -10.50604 -10.47483 -10.36777 -9.74243 -9.58011 -9.19076 -8.95437 -8.78562 -8.28241 -5.92962 -3.95416 2.75980 2.91492 3.35474 3.41351 3.44640 4.09887 4.26012 4.33462 4.50723 4.73844 4.77560 4.79110 4.91651 4.95087 5.05270 5.19068 5.25110 5.27080 5.35752 5.37874 5.40489 5.42030 5.42656 5.51459 5.54259 5.58314 5.62205 5.74015 5.82212 5.84633 5.88214 5.89286 6.00856 6.13808 6.17662 6.22183 6.35889 6.58560 6.87595 7.05220 7.23278 7.53542 7.76768 7.93130 8.08726 8.27489 8.50480 9.12331 9.68033 11.18408 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.039611 B = 0.002527 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.705391 B =11079.348126 C =11372.068659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C -0.071 4.071 4 C -0.110 4.110 5 C -0.154 4.154 6 C -0.127 4.127 7 C 0.099 3.901 8 N -0.629 5.629 9 C 0.533 3.467 10 O -0.536 6.536 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.109 4.109 14 C 0.020 3.980 15 C -0.519 4.519 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.108 3.892 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.085 0.915 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 3.184 -29.186 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.072 4.072 4 C -0.148 4.148 5 C -0.211 4.211 6 C -0.166 4.166 7 C -0.024 4.024 8 N -0.365 5.365 9 C 0.324 3.676 10 O -0.411 6.411 11 C -0.173 4.173 12 C -0.141 4.141 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.014 4.014 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.103 0.897 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.488 3.050 -28.531 29.418 hybrid contribution 0.931 -0.044 0.510 1.062 sum -5.557 3.006 -28.021 28.724 Atomic orbital electron populations 1.21901 0.95782 1.01795 1.01985 1.21582 0.96085 0.94938 1.02093 1.21594 0.95038 0.96040 0.94548 1.21580 1.01075 0.98689 0.93477 1.21848 1.01553 1.00842 0.96888 1.22751 0.94892 1.01546 0.97373 1.22389 0.89841 1.00366 0.89810 1.49083 1.08193 1.71993 1.07239 1.20771 0.92355 0.74999 0.79513 1.90708 1.34682 1.49926 1.65825 1.21766 0.93957 1.03593 0.97959 1.21466 0.99445 1.02497 0.90733 1.21643 0.94293 0.99998 0.98775 1.19098 0.96796 0.96999 0.88856 1.21283 0.92890 1.48206 0.93402 0.92768 1.25047 0.96186 0.95576 0.97816 1.69975 1.25380 1.49332 1.08792 0.86609 0.84158 0.77861 0.79439 1.20716 1.21264 1.19934 1.22449 0.90299 0.99805 0.88871 0.92445 0.92781 0.92330 0.91517 0.91855 0.91407 0.91794 0.92893 0.92512 0.92324 0.90097 0.90731 0.91159 0.89982 0.89305 0.89293 0.91812 0.91818 0.93513 0.93500 0.96593 0.96582 0.93058 0.89658 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.27 37.16 0.34 -0.84 16 2 C -0.11 -0.85 4.33 -26.73 -0.12 -0.96 16 3 C -0.07 -0.51 0.49 -152.95 -0.08 -0.59 16 4 C -0.11 -0.63 4.28 -26.73 -0.11 -0.75 16 5 C -0.15 -0.76 9.33 37.16 0.35 -0.42 16 6 C -0.13 -0.83 5.80 -25.16 -0.15 -0.97 16 7 C 0.10 0.79 6.91 -2.40 -0.02 0.78 16 8 N -0.63 -7.29 3.32 -169.31 -0.56 -7.85 16 9 C 0.53 8.15 7.91 -10.99 -0.09 8.06 16 10 O -0.54 -10.43 16.25 5.56 0.09 -10.33 16 11 C -0.13 -1.90 4.68 -27.88 -0.13 -2.03 16 12 C -0.10 -1.93 4.50 -26.73 -0.12 -2.05 16 13 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.84 13.29 55.43 0.74 -27.10 16 19 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.11 1.08 5.97 -2.41 -0.01 1.06 16 24 H 0.06 0.36 6.65 -51.93 -0.35 0.02 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.51 6.30 -51.93 -0.33 0.18 16 27 H 0.07 0.45 6.62 -51.93 -0.34 0.10 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.39 6.63 -51.93 -0.34 0.05 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.27 6.77 -51.93 -0.35 -0.09 16 33 H 0.06 0.30 6.51 -51.93 -0.34 -0.04 16 34 H 0.08 0.41 6.70 -51.94 -0.35 0.06 16 35 H 0.07 0.49 7.72 -51.93 -0.40 0.09 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.61 7.30 -51.93 -0.38 0.23 16 38 H 0.09 1.12 7.95 -51.93 -0.41 0.70 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.09 1.00 5.81 -51.93 -0.30 0.70 16 48 H 0.07 0.61 7.86 -51.93 -0.41 0.20 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -33.71 368.38 -8.93 -42.64 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -8.91 Total: -5.27 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.82 Total: -14.74 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.17 Total: -34.95 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.71 -8.93 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.894 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds