Wall clock time and date at job start Tue Mar 31 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46917 * 2 1 4 4 C 1.52992 * 110.30793 * 302.64252 * 3 2 1 5 5 C 1.53001 * 109.47044 * 301.72074 * 4 3 2 6 6 C 1.54592 * 110.32064 * 180.37441 * 3 2 1 7 7 C 1.54394 * 104.81374 * 241.11586 * 6 3 2 8 8 N 1.48150 * 104.72180 * 23.88768 * 7 6 3 9 9 C 1.34777 * 127.83335 * 140.35769 * 8 7 6 10 10 O 1.21279 * 119.99662 * 179.97438 * 9 8 7 11 11 C 1.50697 * 120.00267 * 359.97438 * 9 8 7 12 12 C 1.53000 * 109.47125 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47209 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47209 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47125 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99793 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99968 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00142 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00021 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47148 * 89.99922 * 19 17 15 21 21 H 1.48500 * 109.47213 * 210.00273 * 19 17 15 22 22 H 1.48501 * 109.47062 * 330.00217 * 19 17 15 23 23 C 1.48139 * 104.32483 * 320.36415 * 8 7 6 24 24 H 1.09004 * 109.47675 * 62.86518 * 1 2 3 25 25 H 1.08999 * 109.47117 * 182.86641 * 1 2 3 26 26 H 1.09002 * 109.47250 * 302.86597 * 1 2 3 27 27 H 1.08996 * 109.46930 * 240.00797 * 2 1 3 28 28 H 1.08999 * 109.47223 * 120.00248 * 2 1 3 29 29 H 1.08997 * 109.47824 * 61.72154 * 4 3 2 30 30 H 1.09003 * 109.47137 * 181.72639 * 4 3 2 31 31 H 1.08999 * 109.47035 * 179.81006 * 5 4 3 32 32 H 1.08997 * 109.47278 * 299.80961 * 5 4 3 33 33 H 1.09000 * 109.47051 * 59.80625 * 5 4 3 34 34 H 1.08988 * 110.44095 * 122.27277 * 6 3 2 35 35 H 1.09004 * 110.38694 * 359.91753 * 6 3 2 36 36 H 1.09001 * 110.40378 * 265.04961 * 7 6 3 37 37 H 1.08993 * 110.41135 * 142.73541 * 7 6 3 38 38 H 1.09000 * 109.47386 * 300.00208 * 11 9 8 39 39 H 1.08999 * 109.46727 * 60.00028 * 11 9 8 40 40 H 1.09006 * 109.46886 * 300.00042 * 12 11 9 41 41 H 1.09003 * 109.46995 * 59.99951 * 12 11 9 42 42 H 1.08997 * 109.46663 * 300.00178 * 13 12 11 43 43 H 1.08999 * 109.46862 * 59.99921 * 13 12 11 44 44 H 1.08998 * 109.46547 * 299.99741 * 14 13 12 45 45 H 1.09003 * 109.46995 * 59.99734 * 14 13 12 46 46 H 0.96993 * 119.99981 * 179.97438 * 18 17 15 47 47 H 1.08995 * 110.40916 * 158.37196 * 23 8 7 48 48 H 1.09006 * 110.40442 * 280.79583 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4872 2.2011 -1.2082 5 6 1.9062 1.4863 -2.4945 6 6 3.5856 1.4655 -0.0095 7 6 3.9777 2.1894 1.2967 8 7 2.8155 1.9997 2.1957 9 6 2.8271 1.7446 3.5191 10 8 1.7821 1.6144 4.1206 11 6 4.1384 1.6213 4.2513 12 6 3.8717 1.3331 5.7300 13 6 5.2031 1.2084 6.4736 14 6 4.9364 0.9196 7.9522 15 6 6.2477 0.7963 8.6844 16 1 7.1783 0.9127 8.1488 17 6 6.2594 0.5359 10.0383 18 7 5.1263 0.3946 10.6907 19 14 7.8849 0.3836 10.9461 20 1 8.2966 1.7180 11.4512 21 1 7.7280 -0.5515 12.0890 22 1 8.9224 -0.1366 10.0197 23 6 1.6380 2.1538 1.3101 24 1 -0.3634 0.4687 -0.9146 25 1 -0.3633 -1.0264 0.0514 26 1 -0.3634 0.5577 0.8632 27 1 1.8932 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.3993 2.2352 -1.1494 30 1 1.8829 3.2168 -1.2116 31 1 1.5096 2.0248 -3.3551 32 1 2.9940 1.4552 -2.5551 33 1 1.5134 0.4695 -2.4895 34 1 3.9528 2.0183 -0.8740 35 1 3.9805 0.4495 -0.0126 36 1 4.1432 3.2502 1.1082 37 1 4.8703 1.7372 1.7287 38 1 4.7196 0.8057 3.8209 39 1 4.6957 2.5533 4.1579 40 1 3.2907 2.1490 6.1601 41 1 3.3141 0.4011 5.8238 42 1 5.7844 0.3929 6.0435 43 1 5.7602 2.1406 6.3798 44 1 4.3549 1.7350 8.3824 45 1 4.3793 -0.0127 8.0456 46 1 5.1345 0.2110 11.6430 47 1 0.7651 1.6729 1.7513 48 1 1.4381 3.2090 1.1238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588161313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:15 Heat of formation + Delta-G solvation = -94.693018 kcal Electronic energy + Delta-G solvation = -22301.333904 eV Core-core repulsion = 19160.819503 eV Total energy + Delta-G solvation = -3140.514402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.38042 -39.57379 -36.64844 -35.88268 -34.61064 -32.27082 -31.76685 -30.85311 -29.27259 -27.42735 -25.65032 -24.45212 -23.51914 -23.17594 -21.74329 -20.12953 -19.31569 -18.43632 -17.94978 -17.36020 -16.63428 -16.50174 -16.34336 -16.09083 -15.38779 -14.94137 -14.63704 -14.52956 -14.17782 -14.07243 -13.71343 -13.62291 -13.53867 -13.29058 -13.07622 -12.87629 -12.80830 -12.74064 -12.36647 -12.34633 -12.17711 -12.16503 -12.06535 -11.87233 -11.40229 -11.36672 -11.35943 -11.18843 -11.16405 -11.12921 -10.75696 -10.55568 -9.72921 -8.18950 -6.31385 1.40070 1.42701 1.53770 1.60757 1.96848 2.41815 3.13612 3.40737 3.66707 3.72738 3.82436 4.01029 4.10033 4.18886 4.22791 4.35457 4.39303 4.51006 4.54805 4.60156 4.63882 4.65545 4.72546 4.76862 4.79267 4.83710 4.89702 4.96029 4.98773 4.99225 5.10905 5.16049 5.18155 5.26661 5.30785 5.32286 5.34585 5.34935 5.43894 5.53236 5.55472 5.65447 5.76528 5.87002 6.24567 6.54350 6.86930 7.15146 7.38221 8.93445 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.039611 B = 0.002527 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.705391 B =11079.348126 C =11372.068659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 C -0.063 4.063 4 C -0.106 4.106 5 C -0.152 4.152 6 C -0.122 4.122 7 C 0.091 3.909 8 N -0.626 5.626 9 C 0.527 3.473 10 O -0.594 6.594 11 C -0.121 4.121 12 C -0.095 4.095 13 C -0.094 4.094 14 C 0.018 3.982 15 C -0.541 4.541 16 H 0.067 0.933 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.259 1.259 23 C 0.102 3.898 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.062 0.938 44 H -0.016 1.016 45 H -0.016 1.016 46 H 0.263 0.737 47 H 0.059 0.941 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 3.792 -31.866 32.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.145 4.145 3 C -0.064 4.064 4 C -0.144 4.144 5 C -0.209 4.209 6 C -0.160 4.160 7 C -0.030 4.030 8 N -0.359 5.359 9 C 0.318 3.682 10 O -0.474 6.474 11 C -0.160 4.160 12 C -0.133 4.133 13 C -0.131 4.131 14 C -0.019 4.019 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.795 3.205 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.182 1.182 23 C -0.021 4.021 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.002 0.998 45 H 0.002 0.998 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.815 3.671 -31.283 31.728 hybrid contribution 0.031 -0.223 1.304 1.324 sum -3.784 3.448 -29.978 30.412 Atomic orbital electron populations 1.21888 0.95923 1.01586 1.01941 1.21567 0.96005 0.95382 1.01550 1.21548 0.95924 0.95354 0.93600 1.21557 1.00906 0.98959 0.92987 1.21833 1.02056 1.00600 0.96425 1.22771 0.93811 1.01933 0.97438 1.22739 0.88756 1.01963 0.89585 1.49109 1.10399 1.69906 1.06527 1.20883 0.91802 0.74832 0.80723 1.90685 1.36396 1.52927 1.67432 1.21622 0.94091 1.05860 0.94449 1.21251 0.97501 1.00662 0.93917 1.21434 0.95743 1.01126 0.94819 1.19058 0.95592 0.94228 0.92989 1.21743 0.93819 1.48156 0.94169 0.91495 1.26120 1.00509 0.94908 0.98996 1.70137 1.28270 1.50217 1.09277 0.85359 0.78989 0.78214 0.77937 1.19662 1.20943 1.18246 1.22624 0.89140 1.00556 0.89755 0.90882 0.92940 0.94104 0.89896 0.94399 0.91727 0.90931 0.92266 0.91758 0.92592 0.87635 0.90557 0.89264 0.88822 0.86728 0.86619 0.93946 0.94027 0.92038 0.91969 0.99761 0.99773 0.92848 0.92231 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.27 71.98 0.67 -1.67 16 2 C -0.11 -1.57 4.33 30.59 0.13 -1.44 16 3 C -0.06 -0.80 0.49 -51.17 -0.03 -0.82 16 4 C -0.11 -0.94 4.28 30.59 0.13 -0.81 16 5 C -0.15 -1.04 9.33 71.98 0.67 -0.36 16 6 C -0.12 -1.18 5.80 31.61 0.18 -1.00 16 7 C 0.09 1.17 6.91 86.54 0.60 1.77 16 8 N -0.63 -13.86 3.32 -807.95 -2.68 -16.54 16 9 C 0.53 16.17 7.91 87.66 0.69 16.86 16 10 O -0.59 -24.40 16.25 -3.03 -0.05 -24.45 16 11 C -0.12 -3.30 4.68 29.85 0.14 -3.16 16 12 C -0.10 -3.64 4.50 30.60 0.14 -3.50 16 13 C -0.09 -3.94 5.15 30.60 0.16 -3.79 16 14 C 0.02 1.04 4.97 29.85 0.15 1.18 16 15 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 16 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 17 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 18 N -0.94 -59.85 13.29 21.45 0.28 -59.57 16 19 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 23 C 0.10 1.97 5.97 86.54 0.52 2.49 16 24 H 0.07 0.85 6.65 -2.38 -0.02 0.83 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.04 0.75 6.30 -2.39 -0.02 0.74 16 27 H 0.08 0.95 6.62 -2.39 -0.02 0.93 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.63 6.63 -2.39 -0.02 0.61 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.36 6.77 -2.39 -0.02 0.34 16 33 H 0.06 0.42 6.51 -2.39 -0.02 0.41 16 34 H 0.11 0.57 6.70 -2.39 -0.02 0.56 16 35 H 0.08 0.76 7.72 -2.39 -0.02 0.75 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 1.02 7.30 -2.39 -0.02 1.00 16 38 H 0.11 2.56 7.95 -2.39 -0.02 2.54 16 39 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.04 1.77 8.10 -2.38 -0.02 1.75 16 41 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 42 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 44 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 45 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 46 H 0.26 15.68 8.31 -92.71 -0.77 14.90 16 47 H 0.06 1.48 5.81 -2.39 -0.01 1.47 16 48 H 0.08 1.33 7.86 -2.38 -0.02 1.31 16 Total: -1.00 -76.73 368.38 5.33 -71.40 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.90 Total: 7.76 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 4.85 Total: -25.86 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -2.39 Total: -76.10 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -76.73 5.33 -71.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.293 kcal (2) G-P(sol) polarization free energy of solvation -76.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds