Wall clock time and date at job start Tue Mar 31 2020 05:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47338 * 2 1 4 4 N 1.46497 * 109.46992 * 60.00083 * 3 2 1 5 5 C 1.34777 * 119.99525 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00463 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99675 * 179.72583 * 5 4 3 8 8 C 1.53004 * 109.47208 * 180.27843 * 7 5 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 5 10 10 C 1.53011 * 109.46712 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.46921 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99765 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00083 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00147 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00278 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47002 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47093 * 119.99802 * 15 13 11 18 18 H 1.48490 * 109.47068 * 240.00064 * 15 13 11 19 19 C 1.53006 * 109.46977 * 120.00210 * 2 1 3 20 20 C 1.52999 * 109.47258 * 59.99740 * 19 2 1 21 21 C 1.52998 * 109.47306 * 60.00015 * 20 19 2 22 22 C 1.53006 * 109.46950 * 300.00173 * 21 20 19 23 23 C 1.52998 * 109.46903 * 239.99777 * 2 1 3 24 24 H 1.09003 * 109.47465 * 59.99650 * 1 2 3 25 25 H 1.09001 * 109.47749 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46864 * 300.00020 * 1 2 3 27 27 H 1.08995 * 109.46838 * 299.99971 * 3 2 1 28 28 H 1.09001 * 109.46617 * 180.02562 * 3 2 1 29 29 H 0.97000 * 120.00580 * 0.02562 * 4 3 2 30 30 H 1.09009 * 109.47352 * 300.27556 * 7 5 4 31 31 H 1.08998 * 109.47585 * 60.27844 * 7 5 4 32 32 H 1.09000 * 109.46887 * 300.00372 * 8 7 5 33 33 H 1.08998 * 109.46846 * 59.99549 * 8 7 5 34 34 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 35 35 H 1.09001 * 109.47109 * 60.00906 * 9 8 7 36 36 H 1.09003 * 109.46627 * 299.99937 * 10 9 8 37 37 H 1.08992 * 109.47177 * 60.00618 * 10 9 8 38 38 H 0.96999 * 120.00235 * 180.02562 * 14 13 11 39 39 H 1.09007 * 109.46697 * 179.97438 * 19 2 1 40 40 H 1.08998 * 109.46912 * 299.99187 * 19 2 1 41 41 H 1.09001 * 109.47054 * 300.00043 * 20 19 2 42 42 H 1.08995 * 109.46838 * 180.02562 * 20 19 2 43 43 H 1.08994 * 109.47484 * 180.02562 * 21 20 19 44 44 H 1.09007 * 109.47220 * 59.99607 * 21 20 19 45 45 H 1.09001 * 109.47123 * 299.99797 * 22 21 20 46 46 H 1.09003 * 109.47135 * 179.97438 * 22 21 20 47 47 H 1.08995 * 109.47215 * 60.00065 * 23 2 1 48 48 H 1.09001 * 109.47513 * 180.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1330 1.1962 5 6 1.8778 3.4232 1.4096 6 8 2.5751 4.0126 0.6113 7 6 1.3704 4.1355 2.6370 8 6 1.8764 5.5794 2.6345 9 6 1.3607 6.3026 3.8802 10 6 1.8673 7.7465 3.8779 11 6 1.3599 8.4587 5.1053 12 1 0.7387 7.9339 5.8160 13 6 1.6896 9.7799 5.3213 14 7 2.4473 10.4184 4.4566 15 14 1.0601 10.6630 6.8423 16 1 0.2348 9.7298 7.6505 17 1 2.2115 11.1339 7.6533 18 1 0.2342 11.8270 6.4326 19 6 2.0399 -0.7213 1.2493 20 6 1.5299 -2.1638 1.2493 21 6 2.0398 -2.8851 0.0001 22 6 1.5298 -2.1638 -1.2492 23 6 2.0399 -0.7213 -1.2492 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6767 1.9562 -0.8900 28 1 3.1300 1.4423 -0.0005 29 1 0.9943 1.6616 1.8349 30 1 0.2804 4.1325 2.6343 31 1 1.7329 3.6251 3.5292 32 1 2.9664 5.5824 2.6371 33 1 1.5139 6.0898 1.7422 34 1 0.2708 6.2997 3.8771 35 1 1.7231 5.7924 4.7726 36 1 2.9573 7.7490 3.8813 37 1 1.5054 8.2571 2.9856 38 1 2.6796 11.3478 4.6088 39 1 3.1300 -0.7217 1.2490 40 1 1.6767 -0.2074 2.1392 41 1 0.4399 -2.1637 1.2493 42 1 1.8928 -2.6774 2.1395 43 1 1.6761 -3.9126 -0.0002 44 1 3.1299 -2.8851 0.0000 45 1 0.4398 -2.1637 -1.2492 46 1 1.8935 -2.6774 -2.1392 47 1 1.6766 -0.2075 -2.1392 48 1 3.1299 -0.7218 -1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588161471.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:32 Heat of formation + Delta-G solvation = -95.408135 kcal Electronic energy + Delta-G solvation = -21919.365861 eV Core-core repulsion = 18778.820450 eV Total energy + Delta-G solvation = -3140.545411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.41799 -39.08210 -35.23979 -34.71076 -32.64253 -32.15516 -31.16990 -29.71494 -27.54049 -26.51015 -25.03017 -23.14919 -22.29107 -21.29366 -20.19346 -19.92392 -18.74337 -17.01725 -16.24954 -15.94270 -15.82524 -15.41789 -15.06726 -14.85116 -14.44709 -14.37274 -13.91060 -13.58645 -13.22273 -13.17622 -12.68294 -12.56300 -12.49726 -12.07003 -11.90934 -11.82368 -11.64488 -11.55293 -11.41286 -11.37815 -10.97225 -10.59356 -10.50080 -10.49913 -10.45289 -10.37499 -10.37153 -9.74442 -9.58026 -9.18457 -9.07632 -8.93986 -8.28560 -5.93072 -3.95440 2.80502 3.20876 3.34566 3.41627 3.45700 4.17106 4.23975 4.29987 4.50813 4.66399 4.80398 4.83472 4.92169 4.95883 4.99791 5.12729 5.22772 5.25911 5.37054 5.38246 5.41626 5.43127 5.51077 5.54775 5.60738 5.64802 5.67535 5.74234 5.76527 5.83661 5.90476 5.91973 6.00555 6.13679 6.18370 6.34926 6.40541 6.59384 6.88297 7.06400 7.23607 7.50553 7.77142 7.93310 8.08765 8.34241 8.50590 9.12573 9.68089 11.18286 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.047490 B = 0.002227 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.450397 B =12568.397997 C =12850.476067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 C 0.129 3.871 4 N -0.736 5.736 5 C 0.510 3.490 6 O -0.537 6.537 7 C -0.139 4.139 8 C -0.103 4.103 9 C -0.110 4.110 10 C 0.019 3.981 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.054 3.946 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.110 4.110 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.107 4.107 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.398 0.602 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.259 0.741 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 -29.477 -9.895 31.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C 0.005 3.995 4 N -0.390 5.390 5 C 0.298 3.702 6 O -0.413 6.413 7 C -0.179 4.179 8 C -0.141 4.141 9 C -0.148 4.148 10 C -0.018 4.018 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.147 4.147 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.147 4.147 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.145 4.145 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.233 0.767 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.029 -28.868 -10.515 30.873 hybrid contribution -0.544 0.336 1.113 1.283 sum -3.573 -28.533 -9.402 30.254 Atomic orbital electron populations 1.21987 0.94124 1.02148 1.02063 1.20787 0.96275 0.93801 0.96290 1.21340 0.99071 0.90824 0.88263 1.46147 1.54741 1.12561 1.25590 1.21087 0.79876 0.81202 0.88082 1.90704 1.37482 1.65955 1.47138 1.21792 1.02275 0.98524 0.95307 1.21443 1.01196 0.91385 1.00073 1.21649 0.99430 0.98847 0.94853 1.19108 0.96487 0.89298 0.96921 1.21325 1.31083 0.96091 1.07200 0.92710 1.25052 0.95328 0.97719 0.96578 1.69987 1.37088 1.10707 1.35690 0.86553 0.78621 0.79673 0.83243 1.19792 1.21072 1.21068 1.21605 1.00928 0.95334 0.96851 1.21580 1.01025 0.95482 0.97799 1.21540 1.00818 0.98708 0.94696 1.21563 1.01046 0.95340 0.97796 1.21516 1.00857 0.95406 0.96696 0.92424 0.91716 0.92622 0.91643 0.91696 0.76699 0.89252 0.89261 0.91838 0.91846 0.93505 0.93510 0.96584 0.96583 0.93120 0.91671 0.91870 0.91629 0.92058 0.92213 0.92041 0.91620 0.92045 0.91626 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 7.61 37.15 0.28 -0.62 16 2 C -0.07 -0.48 0.53 -154.51 -0.08 -0.56 16 3 C 0.13 1.23 4.56 -4.04 -0.02 1.21 16 4 N -0.74 -7.52 4.96 -60.30 -0.30 -7.82 16 5 C 0.51 7.29 7.83 -10.98 -0.09 7.20 16 6 O -0.54 -10.09 15.98 5.55 0.09 -10.00 16 7 C -0.14 -1.90 5.70 -27.88 -0.16 -2.06 16 8 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 9 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 10 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 11 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 15 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 C -0.11 -0.70 4.56 -26.73 -0.12 -0.82 16 20 C -0.12 -0.67 5.65 -26.73 -0.15 -0.82 16 21 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 22 C -0.12 -0.64 5.65 -26.73 -0.15 -0.79 16 23 C -0.11 -0.66 4.73 -26.73 -0.13 -0.79 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.35 4.81 -51.93 -0.25 0.10 16 26 H 0.05 0.34 6.86 -51.93 -0.36 -0.02 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.40 3.04 6.16 -40.82 -0.25 2.79 16 30 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.39 6.86 -51.93 -0.36 0.04 16 41 H 0.07 0.35 6.43 -51.93 -0.33 0.01 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.34 6.43 -51.93 -0.33 0.01 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -33.49 367.09 -9.57 -43.06 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -9.03 Total: -3.92 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -1.58 Total: -16.88 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.44 Total: -34.88 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.49 -9.57 -43.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161471.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.345 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds