Wall clock time and date at job start Tue Mar 31 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46886 * 2 1 4 4 C 1.52998 * 109.47121 * 119.99735 * 2 1 3 5 5 C 1.52994 * 109.46911 * 65.61364 * 4 2 1 6 6 C 1.53001 * 115.55513 * 54.40661 * 5 4 2 7 7 N 1.46498 * 109.46691 * 40.07103 * 6 5 4 8 8 C 1.34775 * 119.99735 * 185.25779 * 7 6 5 9 9 O 1.21285 * 120.00205 * 4.75639 * 8 7 6 10 10 C 1.50701 * 120.00232 * 185.02814 * 8 7 6 11 11 C 1.52995 * 109.47383 * 174.31498 * 10 8 7 12 12 C 1.52999 * 109.47111 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.47069 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46971 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00170 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99769 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99776 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00107 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47557 * 89.99736 * 18 16 14 20 20 H 1.48506 * 109.47125 * 209.99934 * 18 16 14 21 21 H 1.48504 * 109.47094 * 329.99337 * 18 16 14 22 22 C 1.53004 * 117.51606 * 200.11098 * 5 4 2 23 23 C 1.52999 * 60.00244 * 107.48024 * 22 5 4 24 24 H 1.09002 * 109.46909 * 298.61330 * 1 2 3 25 25 H 1.09002 * 109.47213 * 58.61028 * 1 2 3 26 26 H 1.08994 * 109.46905 * 178.61197 * 1 2 3 27 27 H 1.08995 * 109.47137 * 240.00369 * 2 1 3 28 28 H 1.09001 * 109.46750 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47096 * 299.99685 * 3 2 1 30 30 H 1.08996 * 109.47244 * 59.99797 * 3 2 1 31 31 H 1.08999 * 109.47379 * 305.60755 * 4 2 1 32 32 H 1.09005 * 109.47193 * 185.61127 * 4 2 1 33 33 H 1.09006 * 109.46549 * 280.07529 * 6 5 4 34 34 H 1.08997 * 109.47348 * 160.07439 * 6 5 4 35 35 H 0.96999 * 120.00278 * 5.26183 * 7 6 5 36 36 H 1.08996 * 109.47223 * 294.32197 * 10 8 7 37 37 H 1.09007 * 109.46705 * 54.31783 * 10 8 7 38 38 H 1.09004 * 109.47396 * 300.00208 * 11 10 8 39 39 H 1.08999 * 109.47153 * 60.00204 * 11 10 8 40 40 H 1.09001 * 109.46912 * 299.99601 * 12 11 10 41 41 H 1.08999 * 109.47382 * 59.99809 * 12 11 10 42 42 H 1.08993 * 109.47028 * 299.99896 * 13 12 11 43 43 H 1.09007 * 109.47004 * 59.99913 * 13 12 11 44 44 H 0.97003 * 119.99988 * 180.02562 * 17 16 14 45 45 H 1.09004 * 117.49775 * 214.96786 * 22 5 4 46 46 H 1.08998 * 117.49964 * 359.97438 * 22 5 4 47 47 H 1.09004 * 117.49036 * 252.51049 * 23 22 5 48 48 H 1.08996 * 117.50173 * 107.48855 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6484 -2.1986 1.1807 6 6 2.0867 -2.9395 -0.0842 7 7 3.4365 -2.5105 -0.4584 8 6 3.9904 -2.9524 -1.6049 9 8 3.3409 -3.6350 -2.3685 10 6 5.4187 -2.6034 -1.9351 11 6 5.8422 -3.3388 -3.2082 12 6 7.2925 -2.9850 -3.5431 13 6 7.7158 -3.7199 -4.8166 14 6 9.1441 -3.3709 -5.1468 15 1 9.6951 -2.6931 -4.5117 16 6 9.7479 -3.9177 -6.2592 17 7 10.9942 -3.6128 -6.5477 18 14 8.7952 -5.0906 -7.3574 19 1 8.1006 -4.3201 -8.4199 20 1 9.7339 -6.0579 -7.9807 21 1 7.7937 -5.8265 -6.5445 22 6 1.6327 -2.9872 2.4918 23 6 0.3158 -2.6063 1.8123 24 1 -0.3633 0.4922 0.9022 25 1 -0.3634 0.5353 -0.8773 26 1 -0.3633 -1.0273 -0.0249 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.5970 -0.2686 2.1364 32 1 3.1254 -0.6350 1.3009 33 1 1.3952 -2.7129 -0.8958 34 1 2.0858 -4.0130 0.1048 35 1 3.9316 -1.9085 0.1189 36 1 5.5032 -1.5280 -2.0915 37 1 6.0658 -2.9026 -1.1105 38 1 5.7577 -4.4142 -3.0518 39 1 5.1951 -3.0397 -4.0328 40 1 7.3773 -1.9096 -3.6995 41 1 7.9393 -3.2843 -2.7184 42 1 7.6308 -4.7953 -4.6607 43 1 7.0689 -3.4200 -5.6412 44 1 11.4189 -3.9972 -7.3305 45 1 1.9345 -4.0339 2.4531 46 1 1.9017 -2.4536 3.4033 47 1 -0.2817 -1.8220 2.2771 48 1 -0.2487 -3.4023 1.3267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588161565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:35 Heat of formation + Delta-G solvation = -59.040849 kcal Electronic energy + Delta-G solvation = -21988.446952 eV Core-core repulsion = 18849.478545 eV Total energy + Delta-G solvation = -3138.968407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18597 -38.84431 -35.39360 -35.04792 -34.22408 -32.54653 -30.27674 -28.17821 -27.52490 -27.14214 -25.31314 -22.81562 -22.01046 -20.93004 -20.21140 -19.99487 -19.27581 -16.97035 -16.62681 -16.33813 -15.89687 -15.44268 -15.13461 -14.73234 -14.24783 -14.14820 -14.03293 -13.57609 -13.46058 -13.20895 -12.62996 -12.59371 -12.27731 -12.25807 -12.04190 -11.91601 -11.80073 -11.72215 -11.45333 -11.29555 -11.08156 -10.90624 -10.70704 -10.51034 -10.48461 -10.11154 -9.92282 -9.77548 -9.62231 -9.38487 -9.11970 -9.09048 -8.47444 -5.98750 -3.96035 2.71791 3.02102 3.36995 3.42364 3.43858 3.50161 4.14358 4.32761 4.42864 4.47525 4.51944 4.69144 4.76447 4.84743 4.95746 5.23324 5.25051 5.27301 5.31544 5.32178 5.35701 5.37123 5.41816 5.47865 5.50248 5.54839 5.61712 5.66411 5.72416 5.74363 5.83675 5.91574 5.99686 6.06554 6.08183 6.18998 6.33029 6.45566 6.71631 6.85660 7.02060 7.40854 7.44931 7.53667 7.86930 8.26281 8.60415 9.06375 9.64776 11.14791 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.002619 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.285506 B =10688.733219 C =11019.934483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.075 4.075 5 C -0.138 4.138 6 C 0.159 3.841 7 N -0.733 5.733 8 C 0.511 3.489 9 O -0.539 6.539 10 C -0.139 4.139 11 C -0.106 4.106 12 C -0.102 4.102 13 C -0.016 4.016 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.907 5.907 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.264 1.264 22 C -0.173 4.173 23 C -0.164 4.164 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.400 0.600 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.746 7.079 20.652 31.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.206 4.206 4 C -0.112 4.112 5 C -0.139 4.139 6 C 0.035 3.965 7 N -0.387 5.387 8 C 0.299 3.701 9 O -0.415 6.415 10 C -0.179 4.179 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.210 4.210 23 C -0.201 4.201 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.235 0.765 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.074 6.526 19.967 31.204 hybrid contribution -0.155 -0.310 -0.290 0.452 sum -23.228 6.217 19.677 31.071 Atomic orbital electron populations 1.21872 0.95228 1.01995 1.01294 1.21130 0.96105 0.95971 0.98455 1.21849 1.01072 0.95960 1.01689 1.21154 1.00571 0.91170 0.98343 1.21682 1.02401 0.95793 0.93999 1.20736 0.83973 0.97373 0.94429 1.46079 1.17313 1.51243 1.24098 1.21070 0.89711 0.79107 0.80221 1.90700 1.63935 1.38238 1.48625 1.21771 0.91785 1.02958 1.01376 1.21476 0.98029 0.99944 0.94938 1.21477 0.92743 1.00314 0.99477 1.19578 0.96894 0.95721 0.93101 1.21191 0.95945 1.28108 1.10433 0.91114 1.25045 0.94771 0.96322 0.97501 1.69924 1.12182 1.44901 1.27582 0.86771 0.80086 0.81409 0.81019 1.20315 1.21479 1.18893 1.23144 1.01302 1.00775 0.95743 1.23029 0.90346 1.03420 1.03327 0.93066 0.93016 0.92194 0.90572 0.92595 0.92626 0.92905 0.91509 0.91571 0.90968 0.91875 0.76487 0.88976 0.89162 0.91970 0.91704 0.92875 0.92872 0.96644 0.97055 0.92836 0.88582 0.88664 0.88429 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.75 37.16 0.33 -0.64 16 2 C -0.10 -0.67 2.74 -90.62 -0.25 -0.92 16 3 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 4 C -0.07 -0.45 4.06 -26.74 -0.11 -0.55 16 5 C -0.14 -0.90 1.48 -154.51 -0.23 -1.13 16 6 C 0.16 1.45 4.86 -4.04 -0.02 1.43 16 7 N -0.73 -7.06 4.75 -60.29 -0.29 -7.35 16 8 C 0.51 6.86 7.82 -10.99 -0.09 6.77 16 9 O -0.54 -9.54 15.96 5.55 0.09 -9.46 16 10 C -0.14 -1.78 5.70 -27.88 -0.16 -1.94 16 11 C -0.11 -1.81 4.52 -26.73 -0.12 -1.93 16 12 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 13 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 14 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.59 13.96 55.43 0.77 -27.82 16 18 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 21 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 22 C -0.17 -1.02 9.90 -26.73 -0.26 -1.29 16 23 C -0.16 -0.94 8.37 -26.73 -0.22 -1.17 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.40 6.39 -51.93 -0.33 0.07 16 27 H 0.08 0.66 6.62 -51.93 -0.34 0.32 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.07 0.37 6.82 -51.93 -0.35 0.01 16 33 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 34 H 0.06 0.63 7.95 -51.93 -0.41 0.22 16 35 H 0.40 2.92 6.84 -40.82 -0.28 2.64 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.17 8.04 -51.93 -0.42 0.76 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 43 H 0.01 0.28 7.57 -51.92 -0.39 -0.12 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 45 H 0.10 0.60 8.09 -51.93 -0.42 0.18 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 378.22 15.07 5.70 5.70 Total: -1.00 -33.50 378.22 -9.10 -42.60 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -9.24 Total: -3.17 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -1.47 Total: -18.39 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.49 Total: -35.17 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.50 -9.10 -42.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588161565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.437 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds