Wall clock time and date at job start Tue Mar 31 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47390 * 2 1 4 4 C 1.52995 * 109.47403 * 239.99618 * 2 1 3 5 5 C 1.53004 * 109.47161 * 119.99577 * 2 1 3 6 6 H 1.09002 * 110.88605 * 299.30077 * 5 2 1 7 7 C 1.55156 * 111.00511 * 175.41650 * 5 2 1 8 8 C 1.54428 * 102.89529 * 206.40857 * 7 5 2 9 9 N 1.47023 * 107.28154 * 22.18672 * 8 7 5 10 10 C 1.34772 * 125.64732 * 181.09073 * 9 8 7 11 11 O 1.21279 * 119.99677 * 179.97438 * 10 9 8 12 12 C 1.50693 * 120.00282 * 359.96750 * 10 9 8 13 13 C 1.53003 * 109.47327 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46941 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46926 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47453 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99588 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00385 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00129 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46926 * 60.00429 * 20 18 16 22 22 H 1.48504 * 109.46977 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47351 * 300.00272 * 20 18 16 24 24 C 1.47430 * 108.69895 * 1.06294 * 9 8 7 25 25 H 1.09002 * 109.47616 * 300.00114 * 1 2 3 26 26 H 1.09002 * 109.47193 * 60.00143 * 1 2 3 27 27 H 1.09004 * 109.47272 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47527 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46836 * 300.00075 * 3 2 1 30 30 H 1.09002 * 109.46834 * 59.99407 * 3 2 1 31 31 H 1.08999 * 109.47622 * 300.00006 * 4 2 1 32 32 H 1.09006 * 109.47239 * 59.99965 * 4 2 1 33 33 H 1.09003 * 109.47574 * 179.97438 * 4 2 1 34 34 H 1.09001 * 110.72614 * 324.75342 * 7 5 2 35 35 H 1.09002 * 110.71438 * 88.02440 * 7 5 2 36 36 H 1.08996 * 109.87511 * 262.77039 * 8 7 5 37 37 H 1.08994 * 110.00498 * 141.68055 * 8 7 5 38 38 H 1.09007 * 109.47272 * 299.99639 * 12 10 9 39 39 H 1.09000 * 109.47166 * 59.99439 * 12 10 9 40 40 H 1.08991 * 109.47362 * 299.99960 * 13 12 10 41 41 H 1.09000 * 109.46949 * 59.99927 * 13 12 10 42 42 H 1.09001 * 109.47638 * 299.99860 * 14 13 12 43 43 H 1.09001 * 109.47581 * 60.00510 * 14 13 12 44 44 H 1.08999 * 109.46927 * 299.99803 * 15 14 13 45 45 H 1.09000 * 109.47280 * 60.00076 * 15 14 13 46 46 H 0.97003 * 120.00603 * 180.02562 * 19 18 16 47 47 H 1.09008 * 110.36125 * 217.02920 * 24 9 8 48 48 H 1.09000 * 110.45875 * 94.76152 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0399 -0.7212 1.2493 6 1 1.6996 -0.2182 2.1545 7 6 3.5866 -0.8430 1.2288 8 6 3.8451 -2.0970 2.0921 9 7 2.6089 -2.8930 2.0872 10 6 2.4203 -4.0548 2.7437 11 8 1.3540 -4.6276 2.6682 12 6 3.5342 -4.6421 3.5714 13 6 3.0621 -5.9518 4.2060 14 6 4.1933 -6.5484 5.0458 15 6 3.7215 -7.8584 5.6799 16 6 4.8354 -8.4458 6.5077 17 1 5.7852 -7.9359 6.5744 18 6 4.6422 -9.6340 7.1797 19 7 3.4859 -10.2552 7.0980 20 14 6.0233 -10.3624 8.2051 21 1 6.4050 -9.4041 9.2734 22 1 5.5648 -11.6332 8.8216 23 1 7.1977 -10.6286 7.3361 24 6 1.6099 -2.2093 1.2458 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 3.9482 -0.9937 0.2116 35 1 4.0486 0.0367 1.6770 36 1 4.0911 -1.8007 3.1117 37 1 4.6628 -2.6796 1.6680 38 1 4.3967 -4.8370 2.9340 39 1 3.8137 -3.9387 4.3558 40 1 2.1999 -5.7566 4.8435 41 1 2.7823 -6.6553 3.4219 42 1 5.0554 -6.7437 4.4080 43 1 4.4735 -5.8451 5.8300 44 1 2.8593 -7.6635 6.3177 45 1 3.4416 -8.5616 4.8955 46 1 3.3498 -11.0910 7.5710 47 1 0.6140 -2.3175 1.6757 48 1 1.6295 -2.6076 0.2313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164047.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:24 Heat of formation + Delta-G solvation = -75.850822 kcal Electronic energy + Delta-G solvation = -22116.359414 eV Core-core repulsion = 18976.662071 eV Total energy + Delta-G solvation = -3139.697343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.50464 -38.69363 -35.91903 -34.84104 -32.59865 -31.14157 -29.94468 -28.87058 -27.74779 -27.44297 -25.71334 -23.73565 -22.18508 -21.82684 -19.96402 -19.15929 -18.66446 -16.94523 -16.74558 -16.12061 -15.62029 -15.04177 -14.70591 -14.50567 -14.42012 -14.34714 -14.01682 -13.65378 -13.05089 -12.85085 -12.57504 -12.54827 -12.47247 -12.11165 -12.04078 -11.97504 -11.63157 -11.60617 -11.55282 -11.44573 -10.94367 -10.82781 -10.79034 -10.69514 -10.51069 -10.47628 -10.36352 -9.74544 -9.57116 -9.18502 -8.95768 -8.68619 -8.27595 -5.92378 -3.94930 2.76604 2.94112 3.37093 3.41287 3.43625 4.04699 4.17366 4.29394 4.50999 4.60046 4.62978 4.76793 4.90424 4.98052 5.03153 5.17659 5.24120 5.30228 5.34026 5.37942 5.38176 5.41546 5.43129 5.46058 5.50452 5.57744 5.67624 5.68671 5.71489 5.75367 5.84919 5.89405 5.97821 6.09467 6.18547 6.20975 6.37039 6.59291 6.88305 7.05879 7.23744 7.49033 7.76949 7.93662 8.09199 8.27723 8.50901 9.12569 9.68410 11.18934 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.048507 B = 0.002374 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.091960 B =11792.224785 C =12134.930303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.150 4.150 5 C -0.091 4.091 6 H 0.084 0.916 7 C -0.132 4.132 8 C 0.100 3.900 9 N -0.627 5.627 10 C 0.527 3.473 11 O -0.536 6.536 12 C -0.133 4.133 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.106 3.894 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.075 0.925 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 25.889 -16.715 30.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.207 4.207 5 C -0.110 4.110 6 H 0.103 0.897 7 C -0.169 4.169 8 C -0.023 4.023 9 N -0.363 5.363 10 C 0.317 3.683 11 O -0.412 6.412 12 C -0.173 4.173 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.016 4.016 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.013 25.315 -16.637 30.359 hybrid contribution 0.794 -0.406 0.615 1.083 sum -1.219 24.909 -16.022 29.642 Atomic orbital electron populations 1.21915 0.94268 1.02216 1.01839 1.20419 0.95739 0.95366 0.94265 1.21866 1.01130 0.94992 1.01791 1.22073 1.01308 1.00618 0.96723 1.22416 0.95208 0.94868 0.98527 0.89748 1.22852 0.95987 0.97197 1.00884 1.22043 0.87457 0.92228 1.00572 1.48611 1.14826 1.22981 1.49869 1.20812 0.89858 0.78726 0.78896 1.90706 1.27821 1.59683 1.62951 1.21772 0.96677 0.99720 0.99127 1.21462 0.99588 0.93549 0.99554 1.21644 0.96156 0.99346 0.97573 1.19095 0.96472 0.90738 0.95420 1.21247 0.99144 1.06419 1.29044 0.92820 1.25044 0.95591 0.97123 0.96848 1.69965 1.23117 1.17223 1.43183 0.86668 0.82438 0.78388 0.80534 1.20298 1.21333 1.20291 1.22353 0.93243 0.90806 0.95230 0.92539 0.92535 0.92298 0.92425 0.92598 0.92625 0.92081 0.92566 0.92100 0.89878 0.90035 0.91300 0.91252 0.89294 0.89304 0.91822 0.91822 0.93507 0.93507 0.96594 0.96589 0.93000 0.90688 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.29 37.15 0.31 -0.58 16 2 C -0.06 -0.33 0.60 -154.51 -0.09 -0.43 16 3 C -0.14 -0.69 8.31 37.16 0.31 -0.38 16 4 C -0.15 -0.87 7.83 37.16 0.29 -0.58 16 5 C -0.09 -0.64 2.39 -88.47 -0.21 -0.85 16 6 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 7 C -0.13 -0.80 5.39 -24.84 -0.13 -0.93 16 8 C 0.10 0.82 6.49 -3.01 -0.02 0.80 16 9 N -0.63 -7.37 3.33 -170.46 -0.57 -7.94 16 10 C 0.53 8.14 7.85 -10.99 -0.09 8.06 16 11 O -0.54 -10.51 16.24 5.56 0.09 -10.42 16 12 C -0.13 -1.93 4.89 -27.88 -0.14 -2.06 16 13 C -0.10 -1.94 4.50 -26.73 -0.12 -2.07 16 14 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 17 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.87 13.29 55.43 0.74 -27.13 16 20 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.11 1.07 5.31 -2.53 -0.01 1.06 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.41 7.33 -51.93 -0.38 0.02 16 28 H 0.06 0.26 7.43 -51.93 -0.39 -0.12 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.41 6.07 -51.93 -0.32 0.09 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.33 6.03 -51.93 -0.31 0.01 16 34 H 0.08 0.46 5.68 -51.93 -0.29 0.16 16 35 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.07 0.87 7.94 -51.92 -0.41 0.46 16 48 H 0.07 0.70 5.72 -51.93 -0.30 0.40 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -33.85 370.82 -8.89 -42.73 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -9.12 Total: -5.91 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -0.59 Total: -14.04 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.17 Total: -35.07 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.85 -8.89 -42.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164047.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.116 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds