Wall clock time and date at job start Tue Mar 31 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47337 * 2 1 4 4 C 1.53005 * 109.46923 * 239.99888 * 2 1 3 5 5 C 1.53002 * 109.47304 * 119.99866 * 2 1 3 6 6 H 1.08989 * 110.91468 * 294.79044 * 5 2 1 7 7 C 1.55164 * 111.00045 * 58.69098 * 5 2 1 8 8 C 1.54320 * 102.93906 * 153.57623 * 7 5 2 9 9 N 1.47024 * 107.27338 * 337.80645 * 8 7 5 10 10 C 1.34773 * 125.64700 * 178.90602 * 9 8 7 11 11 O 1.21289 * 120.00069 * 180.02562 * 10 9 8 12 12 C 1.50698 * 120.00336 * 0.02562 * 10 9 8 13 13 C 1.53006 * 109.47162 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46886 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.46942 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47009 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99945 * 0.02562 * 16 15 14 18 18 C 1.37883 * 120.00131 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99541 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00148 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47355 * 89.99989 * 20 18 16 22 22 H 1.48503 * 109.47321 * 210.00339 * 20 18 16 23 23 H 1.48501 * 109.47106 * 329.99967 * 20 18 16 24 24 C 1.47418 * 108.70313 * 359.16572 * 9 8 7 25 25 H 1.08999 * 109.47097 * 300.00397 * 1 2 3 26 26 H 1.09006 * 109.47636 * 59.99957 * 1 2 3 27 27 H 1.09003 * 109.47710 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47519 * 180.02562 * 3 2 1 29 29 H 1.09011 * 109.46961 * 300.00107 * 3 2 1 30 30 H 1.08991 * 109.47000 * 59.99706 * 3 2 1 31 31 H 1.08994 * 109.47429 * 293.50425 * 4 2 1 32 32 H 1.09006 * 109.46968 * 53.50690 * 4 2 1 33 33 H 1.08999 * 109.46894 * 173.50579 * 4 2 1 34 34 H 1.08999 * 110.72037 * 35.21514 * 7 5 2 35 35 H 1.08997 * 110.86783 * 272.00819 * 7 5 2 36 36 H 1.09003 * 109.88206 * 218.38584 * 8 7 5 37 37 H 1.09003 * 110.01349 * 97.29691 * 8 7 5 38 38 H 1.08995 * 109.47213 * 59.99616 * 12 10 9 39 39 H 1.09003 * 109.47042 * 299.99745 * 12 10 9 40 40 H 1.08995 * 109.46940 * 59.99879 * 13 12 10 41 41 H 1.08994 * 109.46680 * 299.99483 * 13 12 10 42 42 H 1.09001 * 109.47299 * 300.00267 * 14 13 12 43 43 H 1.09006 * 109.46865 * 59.99982 * 14 13 12 44 44 H 1.09004 * 109.47403 * 299.99907 * 15 14 13 45 45 H 1.08995 * 109.47335 * 59.99972 * 15 14 13 46 46 H 0.97003 * 119.99804 * 179.97438 * 19 18 16 47 47 H 1.08998 * 110.36642 * 142.73792 * 24 9 8 48 48 H 1.09000 * 110.37586 * 265.06468 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 1 1.7672 -0.1753 2.1523 7 6 1.5157 -2.1806 1.3018 8 6 2.5937 -2.9053 2.1350 9 7 3.8257 -2.1082 2.0429 10 6 4.9938 -2.3946 2.6511 11 8 5.9495 -1.6623 2.5042 12 6 5.1126 -3.6246 3.5136 13 6 6.5307 -3.7146 4.0809 14 6 6.6511 -4.9631 4.9571 15 6 8.0693 -5.0535 5.5239 16 6 8.1881 -6.2836 6.3865 17 1 7.3373 -6.9358 6.5169 18 6 9.3833 -6.5769 7.0082 19 7 10.4195 -5.7828 6.8489 20 14 9.5308 -8.1019 8.0767 21 1 9.9683 -9.2501 7.2429 22 1 10.5290 -7.8602 9.1493 23 1 8.2122 -8.4077 8.6875 24 6 3.5698 -0.9405 1.1802 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.7746 -1.7770 -1.1931 32 1 1.5847 -0.2789 -2.1355 33 1 3.1237 -0.6217 -1.3093 34 1 1.4534 -2.6044 0.2995 35 1 0.5472 -2.2276 1.7997 36 1 2.7664 -3.9027 1.7307 37 1 2.2756 -2.9772 3.1751 38 1 4.9038 -4.5105 2.9138 39 1 4.3969 -3.5640 4.3335 40 1 6.7390 -2.8287 4.6808 41 1 7.2467 -3.7751 3.2613 42 1 5.9350 -4.9023 5.7767 43 1 6.4427 -5.8493 4.3575 44 1 8.7851 -5.1146 4.7041 45 1 8.2782 -4.1675 6.1233 46 1 11.2603 -5.9889 7.2866 47 1 4.0963 -0.0652 1.5606 48 1 3.8745 -1.1518 0.1553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164048.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:27 Heat of formation + Delta-G solvation = -76.315283 kcal Electronic energy + Delta-G solvation = -22117.006143 eV Core-core repulsion = 18977.288660 eV Total energy + Delta-G solvation = -3139.717483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51242 -38.69393 -35.92178 -34.84090 -32.59914 -31.14527 -29.95196 -28.88265 -27.73906 -27.45259 -25.71321 -23.72732 -22.18853 -21.82402 -19.96439 -19.15827 -18.67165 -16.94749 -16.74724 -16.12461 -15.61940 -15.03751 -14.70411 -14.48703 -14.42791 -14.33737 -13.98380 -13.72532 -13.02728 -12.85005 -12.57774 -12.56015 -12.44638 -12.10693 -12.04445 -11.97367 -11.63708 -11.60617 -11.53205 -11.48942 -10.95900 -10.83682 -10.79473 -10.69683 -10.49750 -10.46970 -10.36579 -9.74411 -9.57351 -9.18573 -8.94992 -8.68406 -8.27951 -5.92711 -3.95084 2.76644 2.94233 3.35669 3.41523 3.44841 4.04756 4.17624 4.29020 4.50904 4.59951 4.63531 4.76007 4.90863 4.98042 5.04013 5.17523 5.23293 5.29737 5.34522 5.37990 5.38491 5.41205 5.42875 5.46850 5.50635 5.57523 5.66866 5.69323 5.71024 5.75664 5.84764 5.89472 5.97450 6.08803 6.18544 6.21090 6.37024 6.59301 6.88277 7.05877 7.23722 7.49076 7.77148 7.93553 8.09047 8.27803 8.50815 9.12644 9.68277 11.18651 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.048510 B = 0.002374 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.058294 B =11791.752435 C =12134.479206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.150 4.150 5 C -0.091 4.091 6 H 0.084 0.916 7 C -0.130 4.130 8 C 0.100 3.900 9 N -0.627 5.627 10 C 0.527 3.473 11 O -0.536 6.536 12 C -0.133 4.133 13 C -0.104 4.104 14 C -0.109 4.109 15 C 0.019 3.981 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.105 3.895 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.074 0.926 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.884 11.360 -15.906 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.058 4.058 3 C -0.202 4.202 4 C -0.207 4.207 5 C -0.110 4.110 6 H 0.102 0.898 7 C -0.168 4.168 8 C -0.023 4.023 9 N -0.363 5.363 10 C 0.317 3.683 11 O -0.412 6.412 12 C -0.173 4.173 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.017 4.017 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.084 11.747 -15.879 30.381 hybrid contribution 0.090 -0.872 0.633 1.081 sum -22.994 10.876 -15.246 29.656 Atomic orbital electron populations 1.21876 0.94192 1.01954 1.01782 1.20421 0.95703 0.95400 0.94250 1.21913 1.01392 0.95057 1.01825 1.22063 1.01418 1.00487 0.96718 1.22381 0.94386 0.95730 0.98530 0.89773 1.22803 0.98071 0.94972 1.00921 1.22030 0.84410 0.95244 1.00638 1.48610 1.11324 1.26340 1.49999 1.20816 0.80607 0.87519 0.79360 1.90708 1.36866 1.51231 1.62362 1.21772 1.01706 0.94937 0.98877 1.21464 0.92784 1.00059 0.99848 1.21644 1.01015 0.94717 0.97336 1.19099 0.90112 0.96826 0.95726 1.21286 0.96734 1.08829 1.28924 0.92766 1.25050 0.96007 0.96751 0.96839 1.69979 1.01929 1.37439 1.44129 0.86605 0.77779 0.83413 0.80248 1.20721 1.21270 1.19934 1.22331 0.95033 0.89366 0.95001 0.92625 0.92609 0.92369 0.92335 0.92536 0.92550 0.92135 0.92559 0.92093 0.90029 0.90007 0.91262 0.91273 0.89297 0.89305 0.91827 0.91817 0.93504 0.93510 0.96591 0.96580 0.93063 0.90709 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.23 37.15 0.31 -0.38 16 2 C -0.06 -0.33 0.60 -154.51 -0.09 -0.43 16 3 C -0.14 -0.88 8.35 37.16 0.31 -0.57 16 4 C -0.15 -0.88 7.69 37.16 0.29 -0.59 16 5 C -0.09 -0.64 2.38 -88.58 -0.21 -0.85 16 6 H 0.08 0.62 8.14 -51.94 -0.42 0.20 16 7 C -0.13 -0.79 5.13 -24.90 -0.13 -0.92 16 8 C 0.10 0.82 6.49 -3.07 -0.02 0.80 16 9 N -0.63 -7.37 3.33 -170.66 -0.57 -7.94 16 10 C 0.53 8.14 7.85 -10.99 -0.09 8.06 16 11 O -0.54 -10.52 16.24 5.55 0.09 -10.43 16 12 C -0.13 -1.93 4.89 -27.88 -0.14 -2.06 16 13 C -0.10 -1.95 4.50 -26.73 -0.12 -2.07 16 14 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -15.19 9.11 -34.44 -0.31 -15.51 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.87 13.29 55.43 0.74 -27.13 16 20 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 24 C 0.11 1.06 5.54 -2.65 -0.01 1.05 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.26 7.24 -51.93 -0.38 -0.11 16 28 H 0.06 0.40 7.58 -51.93 -0.39 0.00 16 29 H 0.06 0.31 8.14 -51.92 -0.42 -0.12 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 5.99 -51.93 -0.31 0.03 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.41 6.36 -51.93 -0.33 0.08 16 34 H 0.08 0.45 5.90 -51.93 -0.31 0.14 16 35 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 48 H 0.07 0.71 5.60 -51.93 -0.29 0.42 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -33.88 371.06 -8.91 -42.79 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -9.15 Total: -5.98 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -0.59 Total: -14.03 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.17 Total: -35.07 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.88 -8.91 -42.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164048.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.525 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds