Wall clock time and date at job start Tue Mar 31 2020 05:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47082 * 2 1 4 4 C 1.52997 * 109.47384 * 120.00442 * 2 1 3 5 5 C 1.52994 * 109.47384 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.47031 * 299.99643 * 5 4 2 7 7 C 1.52997 * 109.46745 * 59.99966 * 6 5 4 8 8 H 1.09002 * 109.47490 * 60.00290 * 7 6 5 9 9 N 1.46505 * 109.47044 * 180.02562 * 7 6 5 10 10 C 1.34777 * 120.00115 * 275.00203 * 9 7 6 11 11 O 1.21288 * 119.99593 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00369 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.47291 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46886 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.52995 * 109.47627 * 300.00120 * 7 6 5 25 25 H 1.09000 * 109.47399 * 299.99918 * 1 2 3 26 26 H 1.09005 * 109.47440 * 59.99518 * 1 2 3 27 27 H 1.08997 * 109.47673 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46870 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47782 * 299.99929 * 3 2 1 30 30 H 1.08996 * 109.47306 * 60.00459 * 3 2 1 31 31 H 1.09006 * 109.47005 * 59.99476 * 4 2 1 32 32 H 1.09000 * 109.46558 * 300.00154 * 4 2 1 33 33 H 1.08997 * 109.47225 * 180.02562 * 5 4 2 34 34 H 1.08993 * 109.47387 * 59.99446 * 5 4 2 35 35 H 1.08997 * 109.47075 * 300.00589 * 6 5 4 36 36 H 1.08992 * 109.46975 * 179.97438 * 6 5 4 37 37 H 0.97003 * 120.00244 * 95.00173 * 9 7 6 38 38 H 1.09001 * 109.46613 * 59.99889 * 12 10 9 39 39 H 1.09002 * 109.47120 * 300.00240 * 12 10 9 40 40 H 1.09001 * 109.46652 * 60.00253 * 13 12 10 41 41 H 1.08992 * 109.47514 * 300.00342 * 13 12 10 42 42 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 43 43 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 44 44 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 45 45 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 46 46 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 47 47 H 1.08999 * 109.47773 * 180.02562 * 24 7 6 48 48 H 1.09006 * 109.47109 * 300.00157 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5699 -0.7208 1.2495 6 6 4.0805 -1.4417 0.0001 7 6 3.5704 -0.7203 -1.2490 8 1 3.9334 0.3075 -1.2488 9 7 4.0587 -1.4109 -2.4453 10 6 5.2807 -1.1251 -2.9368 11 8 5.9759 -0.2958 -2.3890 12 6 5.7832 -1.8358 -4.1670 13 6 7.1855 -1.3298 -4.5112 14 6 7.6959 -2.0519 -5.7598 15 6 9.0984 -1.5465 -6.1037 16 6 9.6010 -2.2572 -7.3339 17 1 8.9817 -2.9953 -7.8219 18 6 10.8508 -1.9644 -7.8370 19 7 11.6047 -1.0652 -7.2430 20 14 11.4741 -2.8459 -9.3615 21 1 10.5575 -2.5765 -10.4984 22 1 12.8347 -2.3543 -9.6961 23 1 11.5249 -4.3072 -9.1023 24 6 2.0405 -0.7208 -1.2493 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7490 1.2491 32 1 1.6766 -0.2075 2.1391 33 1 3.9333 -1.2350 2.1391 34 1 3.9329 0.3070 1.2497 35 1 3.7174 -2.4694 -0.0001 36 1 5.1704 -1.4409 0.0001 37 1 3.5026 -2.0739 -2.8836 38 1 5.1106 -1.6372 -5.0014 39 1 5.8200 -2.9086 -3.9773 40 1 7.8582 -1.5281 -3.6768 41 1 7.1484 -0.2572 -4.7010 42 1 7.7331 -3.1246 -5.5696 43 1 7.0233 -1.8541 -6.5944 44 1 9.0616 -0.4738 -6.2939 45 1 9.7709 -1.7445 -5.2691 46 1 12.4838 -0.8589 -7.5972 47 1 1.6771 -0.2073 -2.1395 48 1 1.6774 -1.7486 -1.2496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:49 Heat of formation + Delta-G solvation = -95.480238 kcal Electronic energy + Delta-G solvation = -22062.022282 eV Core-core repulsion = 18921.473744 eV Total energy + Delta-G solvation = -3140.548538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.45489 -38.94320 -35.12301 -34.62422 -32.88915 -32.54186 -30.40668 -29.09764 -27.69013 -26.70166 -25.59398 -23.06365 -22.23774 -21.21197 -20.28351 -19.92914 -18.64892 -16.81836 -16.42350 -16.07330 -15.62528 -15.12945 -15.04999 -14.54407 -14.43379 -14.20989 -13.95967 -13.52639 -13.40159 -12.91125 -12.56500 -12.43974 -12.25974 -12.16145 -11.82137 -11.72649 -11.64682 -11.56762 -11.42168 -11.28930 -10.94318 -10.85304 -10.53999 -10.51260 -10.48766 -10.37147 -10.34916 -9.69859 -9.57597 -9.18035 -9.06231 -8.95615 -8.27825 -5.92728 -3.95234 2.79611 3.15807 3.36902 3.41152 3.43489 4.26253 4.32525 4.43067 4.51001 4.76864 4.77947 4.92681 5.01798 5.05657 5.13870 5.16761 5.30819 5.32395 5.34112 5.38756 5.41653 5.43477 5.50064 5.58308 5.61046 5.71190 5.72380 5.80593 5.88522 5.93084 5.94368 6.02445 6.05312 6.18202 6.22562 6.35084 6.46903 6.59661 6.88141 7.06234 7.23577 7.52384 7.76635 7.93298 8.08921 8.34864 8.50649 9.12313 9.68119 11.18572 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.047669 B = 0.002297 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.244996 B =12187.763191 C =12327.577761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.149 4.149 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.129 4.129 7 C 0.142 3.858 8 H 0.090 0.910 9 N -0.736 5.736 10 C 0.512 3.488 11 O -0.536 6.536 12 C -0.139 4.139 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.115 4.115 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.068 0.932 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.870 0.016 16.976 30.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.206 4.206 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.168 4.168 7 C 0.038 3.962 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.300 3.700 11 O -0.411 6.411 12 C -0.179 4.179 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.153 4.153 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.172 0.719 17.352 29.764 hybrid contribution 0.116 -0.844 -1.069 1.367 sum -24.056 -0.125 16.283 29.049 Atomic orbital electron populations 1.21858 0.94364 1.01733 1.01855 1.20476 0.95296 0.95669 0.94686 1.22022 1.01848 0.95026 1.01740 1.21627 0.95648 1.00328 0.97034 1.21548 0.95374 1.01276 0.97556 1.21923 1.01473 0.99322 0.94087 1.20987 0.93248 0.97637 0.84338 0.89217 1.46198 1.18427 1.44188 1.30000 1.21091 0.80652 0.82508 0.85790 1.90698 1.55940 1.33671 1.60837 1.21797 1.00228 1.00934 0.94968 1.21441 0.92521 1.00728 0.99394 1.21649 0.99842 0.98637 0.94654 1.19092 0.89936 0.96457 0.96241 1.21250 1.00850 1.22333 1.11429 0.92824 1.25048 0.96993 0.95328 0.97248 1.69970 1.10498 1.32676 1.40344 0.86665 0.77874 0.79978 0.83501 1.20299 1.21334 1.20295 1.21860 0.94234 1.01052 0.98138 0.92546 0.92589 0.92677 0.91742 0.92629 0.92627 0.91947 0.91892 0.91809 0.91384 0.91989 0.91320 0.76883 0.89250 0.89245 0.91860 0.91848 0.93519 0.93515 0.96607 0.96603 0.93006 0.91306 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.47 37.15 0.31 -0.47 16 2 C -0.06 -0.40 0.77 -154.51 -0.12 -0.52 16 3 C -0.15 -1.07 7.78 37.16 0.29 -0.78 16 4 C -0.11 -0.71 4.73 -26.74 -0.13 -0.83 16 5 C -0.12 -0.94 5.65 -26.73 -0.15 -1.09 16 6 C -0.13 -1.22 5.50 -26.73 -0.15 -1.37 16 7 C 0.14 1.37 2.18 -67.93 -0.15 1.22 16 8 H 0.09 1.07 5.86 -51.93 -0.30 0.77 16 9 N -0.74 -7.52 5.08 -53.81 -0.27 -7.79 16 10 C 0.51 7.24 7.79 -10.99 -0.09 7.16 16 11 O -0.54 -9.87 15.65 5.55 0.09 -9.78 16 12 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 13 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 14 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 15 C 0.02 0.53 4.97 -27.89 -0.14 0.40 16 16 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.80 13.29 55.43 0.74 -27.07 16 20 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.11 -0.82 4.20 -26.73 -0.11 -0.93 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.40 2.92 8.60 -40.82 -0.35 2.57 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -33.28 371.34 -9.36 -42.64 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -9.23 Total: -3.00 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -1.25 Total: -17.68 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.46 Total: -34.86 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.28 -9.36 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.842 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds