Wall clock time and date at job start Tue Mar 31 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 115.54764 * 2 1 4 4 C 1.52993 * 117.49959 * 145.67308 * 2 1 3 5 5 C 1.53002 * 117.49764 * 214.98314 * 4 2 1 6 6 N 1.46498 * 109.47325 * 71.55836 * 5 4 2 7 7 C 1.34777 * 120.00059 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00103 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00290 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.47215 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47166 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47525 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47334 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00293 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99953 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99795 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99918 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46938 * 90.00292 * 17 15 13 19 19 H 1.48498 * 109.47383 * 209.99915 * 17 15 13 20 20 H 1.48491 * 109.47510 * 330.00341 * 17 15 13 21 21 C 1.52997 * 60.03377 * 107.47695 * 4 2 1 22 22 C 1.52997 * 117.49881 * 107.50173 * 21 4 2 23 23 C 1.52996 * 117.50025 * 252.52011 * 21 4 2 24 24 H 1.08998 * 109.47136 * 325.71891 * 1 2 3 25 25 H 1.08999 * 109.47166 * 85.72387 * 1 2 3 26 26 H 1.09001 * 109.46908 * 205.71653 * 1 2 3 27 27 H 1.08995 * 109.47107 * 154.27678 * 3 2 1 28 28 H 1.08994 * 109.47112 * 274.27972 * 3 2 1 29 29 H 1.08998 * 109.46889 * 34.27699 * 3 2 1 30 30 H 1.09005 * 117.49999 * 359.97161 * 4 2 1 31 31 H 1.09003 * 109.47011 * 311.55483 * 5 4 2 32 32 H 1.09002 * 109.47415 * 191.56312 * 5 4 2 33 33 H 0.96997 * 120.00203 * 359.97438 * 6 5 4 34 34 H 1.08995 * 109.47580 * 300.00196 * 9 7 6 35 35 H 1.09004 * 109.46656 * 60.00199 * 9 7 6 36 36 H 1.08999 * 109.47611 * 299.99873 * 10 9 7 37 37 H 1.09002 * 109.47256 * 60.00539 * 10 9 7 38 38 H 1.09002 * 109.47210 * 300.00769 * 11 10 9 39 39 H 1.09003 * 109.47235 * 59.99952 * 11 10 9 40 40 H 1.09005 * 109.46876 * 300.00004 * 12 11 10 41 41 H 1.09003 * 109.47194 * 59.99570 * 12 11 10 42 42 H 0.97006 * 120.00272 * 180.02562 * 16 15 13 43 43 H 1.08991 * 109.47413 * 172.93077 * 22 21 4 44 44 H 1.09008 * 109.46866 * 292.93000 * 22 21 4 45 45 H 1.09000 * 109.47523 * 52.92373 * 22 21 4 46 46 H 1.09007 * 109.47104 * 8.60719 * 23 21 4 47 47 H 1.09000 * 109.47589 * 128.60545 * 23 21 4 48 48 H 1.08996 * 109.47393 * 248.61007 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 3.5490 -0.7754 1.4717 6 7 3.2693 0.0659 2.6379 7 6 4.2815 0.4957 3.4172 8 8 5.4239 0.1857 3.1531 9 6 3.9938 1.3616 4.6165 10 6 5.3063 1.7068 5.3229 11 6 5.0142 2.5854 6.5410 12 6 6.3267 2.9311 7.2471 13 6 6.0389 3.7960 8.4472 14 1 5.0216 4.0719 8.6825 15 6 7.0744 4.2351 9.2448 16 7 8.3132 3.8996 8.9579 17 14 6.7177 5.3077 10.7319 18 1 6.4961 4.4467 11.9214 19 1 7.8717 6.2084 10.9809 20 1 5.5017 6.1205 10.4758 21 6 2.2367 -1.1221 -0.7647 22 6 3.5494 -0.7780 -1.4712 23 6 1.3589 -2.1576 -1.4704 24 1 -0.3633 0.8491 0.5788 25 1 -0.3633 0.0766 -1.0248 26 1 -0.3633 -0.9259 0.4459 27 1 3.1818 1.3090 0.4460 28 1 2.2774 1.7413 -1.0247 29 1 1.5804 2.0744 0.5788 30 1 1.6113 -1.8578 1.2692 31 1 4.2013 -0.2375 0.7837 32 1 4.0400 -1.6932 1.7951 33 1 2.3557 0.3142 2.8489 34 1 3.5028 2.2793 4.2929 35 1 3.3417 0.8239 5.3048 36 1 5.7970 0.7890 5.6468 37 1 5.9588 2.2444 4.6349 38 1 4.5233 3.5033 6.2176 39 1 4.3619 2.0475 7.2290 40 1 6.8180 2.0134 7.5705 41 1 6.9788 3.4692 6.5589 42 1 9.0417 4.2082 9.5192 43 1 3.4380 -0.9390 -2.5434 44 1 3.7996 0.2664 -1.2847 45 1 4.3461 -1.4162 -1.0888 46 1 0.7295 -2.6611 -0.7365 47 1 0.7296 -1.6588 -2.2075 48 1 1.9921 -2.8908 -1.9699 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588166073.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:03 Heat of formation + Delta-G solvation = -57.392457 kcal Electronic energy + Delta-G solvation = -21863.627249 eV Core-core repulsion = 18724.730321 eV Total energy + Delta-G solvation = -3138.896928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.49426 -39.17455 -34.97529 -34.41215 -32.58648 -31.53476 -30.21534 -29.20723 -28.68950 -26.59926 -26.04560 -24.71800 -22.19228 -20.39093 -19.96060 -19.55559 -18.10680 -16.70047 -16.27747 -16.13420 -15.79517 -15.36813 -15.04979 -14.52387 -14.39369 -14.01663 -13.77120 -13.41890 -13.10050 -12.77899 -12.73050 -12.59650 -12.55594 -12.34812 -12.27485 -12.13474 -11.99153 -11.65119 -11.57182 -11.36820 -11.12724 -10.95622 -10.50198 -10.47586 -10.37139 -10.13482 -9.70360 -9.61812 -9.57403 -9.17516 -9.05116 -8.94605 -8.28050 -5.92818 -3.95183 2.80424 2.90959 3.35604 3.41494 3.44718 3.48214 4.13265 4.27201 4.32984 4.51022 4.68581 4.71410 4.86278 5.00598 5.09117 5.19150 5.21560 5.29829 5.38401 5.41234 5.42674 5.44830 5.48622 5.55154 5.56539 5.60160 5.61757 5.66011 5.67490 5.79060 5.90524 5.93157 5.97880 6.08272 6.18629 6.35154 6.40283 6.59595 6.88464 7.06601 7.23878 7.53146 7.77047 7.93468 8.08946 8.34548 8.50771 9.12585 9.68205 11.18512 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040782 B = 0.002309 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.413713 B =12123.968426 C =12435.781824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.114 4.114 3 C -0.123 4.123 4 C -0.158 4.158 5 C 0.146 3.854 6 N -0.734 5.734 7 C 0.510 3.490 8 O -0.538 6.538 9 C -0.138 4.138 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.054 3.946 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.113 4.113 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.400 0.600 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 -10.874 -22.465 30.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.114 4.114 3 C -0.180 4.180 4 C -0.177 4.177 5 C 0.023 3.977 6 N -0.387 5.387 7 C 0.298 3.702 8 O -0.414 6.414 9 C -0.178 4.178 10 C -0.141 4.141 11 C -0.148 4.148 12 C -0.018 4.018 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.108 4.108 22 C -0.182 4.182 23 C -0.170 4.170 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.799 -11.078 -22.599 30.260 hybrid contribution -0.616 0.603 0.977 1.303 sum -17.415 -10.474 -21.623 29.674 Atomic orbital electron populations 1.21346 0.91990 1.01962 1.01845 1.21756 0.94633 0.91268 1.03718 1.21466 1.00960 0.93728 1.01876 1.22964 0.98772 1.02081 0.93842 1.20807 0.94920 0.94907 0.87073 1.46076 1.10253 1.53547 1.28784 1.21094 0.84813 0.80173 0.84145 1.90705 1.21339 1.57215 1.72112 1.21785 1.01943 0.99339 0.94774 1.21443 0.94225 1.00859 0.97568 1.21647 1.00914 0.97342 0.94868 1.19099 0.91428 0.96527 0.94712 1.21287 0.92993 1.31013 1.10485 0.92768 1.25050 0.95164 0.96523 0.97906 1.69977 0.98742 1.45872 1.38884 0.86607 0.77762 0.80469 0.83222 1.20724 1.21273 1.19936 1.21691 0.98084 0.99361 0.91687 1.21452 0.94725 1.02116 0.99869 1.21326 0.98590 0.97151 0.99962 0.92041 0.92208 0.92467 0.91447 0.92211 0.92005 0.87416 0.91073 0.91407 0.76648 0.89242 0.89245 0.91853 0.91852 0.93515 0.93513 0.96606 0.96593 0.93064 0.92072 0.91692 0.91870 0.92430 0.92110 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 8.88 37.16 0.33 -0.32 16 2 C -0.11 -0.77 2.70 -154.47 -0.42 -1.18 16 3 C -0.12 -0.91 8.01 37.16 0.30 -0.62 16 4 C -0.16 -1.16 5.09 -90.62 -0.46 -1.62 16 5 C 0.15 1.43 4.58 -4.04 -0.02 1.41 16 6 N -0.73 -7.54 4.97 -60.29 -0.30 -7.84 16 7 C 0.51 7.25 7.83 -10.99 -0.09 7.16 16 8 O -0.54 -10.02 15.98 5.55 0.09 -9.93 16 9 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 10 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 11 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 12 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 13 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 17 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.11 -0.73 2.70 -154.48 -0.42 -1.15 16 22 C -0.12 -0.88 8.28 37.16 0.31 -0.57 16 23 C -0.11 -0.64 8.80 37.16 0.33 -0.31 16 24 H 0.06 0.33 7.92 -51.93 -0.41 -0.08 16 25 H 0.06 0.32 8.02 -51.93 -0.42 -0.10 16 26 H 0.06 0.30 7.78 -51.93 -0.40 -0.10 16 27 H 0.07 0.60 5.08 -51.93 -0.26 0.34 16 28 H 0.06 0.42 7.85 -51.93 -0.41 0.01 16 29 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 30 H 0.11 0.75 7.96 -51.93 -0.41 0.33 16 31 H 0.07 0.77 5.22 -51.93 -0.27 0.50 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.40 3.13 8.47 -40.82 -0.35 2.79 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.06 0.37 8.02 -51.93 -0.42 -0.04 16 44 H 0.06 0.49 5.61 -51.92 -0.29 0.20 16 45 H 0.06 0.47 7.84 -51.93 -0.41 0.06 16 46 H 0.06 0.31 7.78 -51.92 -0.40 -0.10 16 47 H 0.06 0.31 8.02 -51.93 -0.42 -0.10 16 48 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -33.38 377.67 -8.95 -42.33 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -9.04 Total: -3.00 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -1.10 Total: -17.26 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.44 Total: -34.90 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.38 -8.95 -42.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588166073.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.067 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds