Wall clock time and date at job start Tue Mar 31 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47465 * 2 1 4 4 C 1.53003 * 109.47241 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46986 * 59.99658 * 4 3 2 6 6 N 1.46495 * 109.47212 * 60.00570 * 5 4 3 7 7 C 1.46508 * 119.99976 * 0.79385 * 6 5 4 8 8 C 1.34776 * 119.99972 * 180.80336 * 6 5 4 9 9 O 1.21276 * 120.00334 * 0.26701 * 8 6 5 10 10 C 1.50706 * 119.99699 * 179.97438 * 8 6 5 11 11 C 1.52998 * 109.46806 * 179.97438 * 10 8 6 12 12 C 1.52995 * 109.47155 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47521 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47604 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99657 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00274 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00100 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00132 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46949 * 90.00540 * 18 16 14 20 20 H 1.48504 * 109.47030 * 210.00250 * 18 16 14 21 21 H 1.48493 * 109.47021 * 330.00422 * 18 16 14 22 22 C 1.53001 * 109.47271 * 299.99904 * 5 4 3 23 23 C 1.52995 * 109.46821 * 60.00122 * 22 5 4 24 24 H 1.08999 * 109.47297 * 59.99864 * 1 2 3 25 25 H 1.08997 * 109.47158 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46683 * 300.00356 * 1 2 3 27 27 H 1.08999 * 109.47297 * 120.00136 * 2 1 3 28 28 H 1.08995 * 109.47409 * 60.00226 * 3 2 1 29 29 H 1.09000 * 109.46717 * 299.99852 * 3 2 1 30 30 H 1.08999 * 109.47191 * 299.99933 * 4 3 2 31 31 H 1.08997 * 109.46934 * 179.97438 * 4 3 2 32 32 H 1.09004 * 109.46791 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46804 * 264.08697 * 7 6 5 34 34 H 1.08994 * 109.46973 * 24.08799 * 7 6 5 35 35 H 1.08994 * 109.46963 * 144.09061 * 7 6 5 36 36 H 1.08997 * 109.46864 * 299.99177 * 10 8 6 37 37 H 1.08996 * 109.47735 * 59.99568 * 10 8 6 38 38 H 1.09002 * 109.47584 * 299.99587 * 11 10 8 39 39 H 1.09008 * 109.47270 * 59.99722 * 11 10 8 40 40 H 1.09001 * 109.47448 * 299.99986 * 12 11 10 41 41 H 1.08996 * 109.47284 * 60.00102 * 12 11 10 42 42 H 1.09001 * 109.46750 * 300.00416 * 13 12 11 43 43 H 1.09008 * 109.47086 * 59.99951 * 13 12 11 44 44 H 0.96998 * 120.00159 * 179.97438 * 17 16 14 45 45 H 1.08995 * 109.46817 * 180.02562 * 22 5 4 46 46 H 1.09000 * 109.47059 * 300.00457 * 22 5 4 47 47 H 1.09002 * 109.47306 * 179.97438 * 23 22 5 48 48 H 1.09009 * 109.47324 * 59.99780 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0795 0.7212 -1.2502 6 7 3.5908 1.4120 -2.4461 7 6 2.7632 2.6133 -2.3113 8 6 3.9025 0.9422 -3.6703 9 8 4.5834 -0.0551 -3.7819 10 6 3.3992 1.6526 -4.9005 11 6 3.8927 0.9203 -6.1499 12 6 3.3813 1.6410 -7.3988 13 6 3.8753 0.9091 -8.6483 14 6 3.3711 1.6186 -9.8785 15 1 2.7591 2.5029 -9.7791 16 6 3.6910 1.1389 -11.1309 17 7 4.4358 0.0617 -11.2519 18 14 3.0654 2.0180 -12.6557 19 1 4.0500 3.0489 -13.0717 20 1 2.8837 1.0352 -13.7542 21 1 1.7652 2.6686 -12.3535 22 6 3.5695 -0.7213 -1.2502 23 6 2.0395 -0.7212 -1.2495 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6768 1.9563 0.8899 29 1 1.6767 1.9562 -0.8900 30 1 3.9338 0.9284 0.8891 31 1 3.9334 2.4700 -0.0011 32 1 5.1696 0.7208 -1.2504 33 1 1.7103 2.3381 -2.3748 34 1 2.9585 3.0827 -1.3472 35 1 3.0048 3.3127 -3.1116 36 1 2.3094 1.6646 -4.8927 37 1 3.7739 2.6761 -4.9079 38 1 4.9826 0.9085 -6.1575 39 1 3.5183 -0.1035 -6.1427 40 1 2.2914 1.6524 -7.3911 41 1 3.7553 2.6647 -7.4063 42 1 4.9652 0.8980 -8.6558 43 1 3.5016 -0.1149 -8.6411 44 1 4.6606 -0.2760 -12.1330 45 1 3.9328 -1.2351 -2.1401 46 1 3.9331 -1.2352 -0.3603 47 1 1.6761 -1.7488 -1.2499 48 1 1.6758 -0.2072 -2.1393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588255150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:07 Heat of formation + Delta-G solvation = -63.452240 kcal Electronic energy + Delta-G solvation = -22808.622144 eV Core-core repulsion = 19669.462444 eV Total energy + Delta-G solvation = -3139.159700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81722 -38.36214 -35.11408 -34.85989 -32.74890 -31.97454 -31.29600 -29.51177 -27.55459 -26.09888 -25.16781 -22.94472 -22.64244 -21.21005 -20.21924 -19.83844 -18.69063 -16.77737 -16.42881 -16.10876 -15.93653 -15.25997 -14.75337 -14.43615 -14.41099 -14.26974 -13.72762 -13.49385 -13.17107 -12.91235 -12.60597 -12.48719 -12.31845 -12.11873 -12.06322 -11.77577 -11.69992 -11.58436 -11.51115 -11.15406 -10.95760 -10.56778 -10.48753 -10.46899 -10.44517 -10.36182 -10.28044 -9.57442 -9.51130 -9.16001 -8.94341 -8.64381 -8.28206 -5.92969 -3.95433 2.78905 2.95664 3.35434 3.41355 3.44644 4.32307 4.43863 4.47563 4.50815 4.71575 4.88112 4.89064 4.97013 5.12359 5.14697 5.19814 5.29083 5.30660 5.37437 5.39410 5.42102 5.43689 5.45914 5.49362 5.56198 5.68932 5.78000 5.81773 5.89385 5.93769 6.02609 6.05774 6.15768 6.18734 6.26969 6.34795 6.55463 6.62119 6.88436 7.05967 7.23361 7.39995 7.76840 7.93350 8.08810 8.32297 8.50627 9.12386 9.68087 11.18399 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.002789 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.925285 B =10037.602212 C =10151.184263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.125 4.125 5 C 0.152 3.848 6 N -0.615 5.615 7 C 0.069 3.931 8 C 0.513 3.487 9 O -0.532 6.532 10 C -0.137 4.137 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.138 4.138 23 C -0.109 4.109 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.260 0.740 45 H 0.088 0.912 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 4.094 27.179 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.179 4.179 4 C -0.163 4.163 5 C 0.049 3.951 6 N -0.351 5.351 7 C -0.073 4.073 8 C 0.303 3.697 9 O -0.408 6.408 10 C -0.177 4.177 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.177 4.177 23 C -0.147 4.147 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.382 3.439 26.992 27.738 hybrid contribution -0.350 0.489 -0.797 0.998 sum -5.732 3.928 26.196 27.102 Atomic orbital electron populations 1.21823 0.95384 1.01661 1.01568 1.21121 0.95280 0.96004 0.98460 1.22254 0.94893 0.97275 1.03452 1.21825 0.96568 1.00645 0.97268 1.20942 0.97984 0.92191 0.83997 1.47978 1.52937 1.28448 1.05732 1.22131 0.94621 0.87319 1.03263 1.21017 0.79699 0.84721 0.84306 1.90656 1.38177 1.25598 1.86373 1.21818 1.02152 1.00655 0.93057 1.21449 1.01219 0.99358 0.92064 1.21642 0.99400 0.98875 0.94819 1.19093 0.96487 0.95551 0.90575 1.21289 1.31739 1.11617 0.91165 0.92774 1.25042 0.95324 0.95084 0.99133 1.69976 1.37615 1.22547 1.23360 0.86616 0.79209 0.79391 0.82895 1.20719 1.21263 1.19918 1.21961 0.95904 0.96279 1.03510 1.21504 0.95428 1.00057 0.97676 0.92701 0.92796 0.92920 0.91644 0.92119 0.89356 0.90613 0.91282 0.91081 0.92177 0.90048 0.91284 0.89397 0.89348 0.91882 0.91884 0.93548 0.93555 0.96617 0.96616 0.93059 0.89389 0.91627 0.92284 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.19 37.16 0.34 -0.68 16 2 C -0.09 -0.68 2.72 -90.62 -0.25 -0.93 16 3 C -0.14 -0.93 4.55 -26.73 -0.12 -1.06 16 4 C -0.13 -0.87 4.91 -26.73 -0.13 -1.00 16 5 C 0.15 1.51 2.95 -67.93 -0.20 1.31 16 6 N -0.62 -6.61 2.25 -173.93 -0.39 -7.00 16 7 C 0.07 0.51 8.00 59.85 0.48 0.99 16 8 C 0.51 7.39 7.38 -10.98 -0.08 7.31 16 9 O -0.53 -9.69 14.02 5.56 0.08 -9.62 16 10 C -0.14 -1.90 4.33 -27.88 -0.12 -2.02 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.14 -1.48 5.23 -26.73 -0.14 -1.62 16 23 C -0.11 -1.06 5.04 -26.73 -0.13 -1.19 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.58 3.66 -51.93 -0.19 0.39 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.42 6.89 -51.93 -0.36 0.06 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.41 6.70 -51.93 -0.35 0.06 16 34 H 0.08 0.47 4.95 -51.93 -0.26 0.21 16 35 H 0.07 0.48 6.69 -51.93 -0.35 0.13 16 36 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 37 H 0.09 1.07 7.42 -51.93 -0.39 0.69 16 38 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.06 1.24 8.10 -51.92 -0.42 0.82 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.09 1.23 6.10 -51.93 -0.32 0.92 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.69 7.60 -51.92 -0.39 0.29 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -33.09 360.14 -9.23 -42.32 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -8.90 Total: -4.24 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -1.16 Total: -16.88 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.34 Total: -34.06 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.09 -9.23 -42.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588255150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.136 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds