Wall clock time and date at job start Tue Mar 31 2020 05:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47465 * 2 1 4 4 C 1.53003 * 109.47241 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46986 * 59.99658 * 4 3 2 6 6 N 1.46495 * 109.47212 * 60.00570 * 5 4 3 7 7 C 1.46508 * 119.99976 * 0.79385 * 6 5 4 8 8 C 1.34776 * 119.99972 * 180.80336 * 6 5 4 9 9 O 1.21276 * 120.00334 * 0.26701 * 8 6 5 10 10 C 1.50706 * 119.99699 * 179.97438 * 8 6 5 11 11 C 1.52998 * 109.46806 * 179.97438 * 10 8 6 12 12 C 1.52995 * 109.47155 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47521 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47604 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99657 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00274 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00100 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00132 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46949 * 90.00540 * 18 16 14 20 20 H 1.48504 * 109.47030 * 210.00250 * 18 16 14 21 21 H 1.48493 * 109.47021 * 330.00422 * 18 16 14 22 22 C 1.53001 * 109.47271 * 299.99904 * 5 4 3 23 23 C 1.52995 * 109.46821 * 60.00122 * 22 5 4 24 24 H 1.08999 * 109.47297 * 59.99864 * 1 2 3 25 25 H 1.08997 * 109.47158 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46683 * 300.00356 * 1 2 3 27 27 H 1.08999 * 109.47297 * 120.00136 * 2 1 3 28 28 H 1.08995 * 109.47409 * 60.00226 * 3 2 1 29 29 H 1.09000 * 109.46717 * 299.99852 * 3 2 1 30 30 H 1.08999 * 109.47191 * 299.99933 * 4 3 2 31 31 H 1.08997 * 109.46934 * 179.97438 * 4 3 2 32 32 H 1.09004 * 109.46791 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46804 * 264.08697 * 7 6 5 34 34 H 1.08994 * 109.46973 * 24.08799 * 7 6 5 35 35 H 1.08994 * 109.46963 * 144.09061 * 7 6 5 36 36 H 1.08997 * 109.46864 * 299.99177 * 10 8 6 37 37 H 1.08996 * 109.47735 * 59.99568 * 10 8 6 38 38 H 1.09002 * 109.47584 * 299.99587 * 11 10 8 39 39 H 1.09008 * 109.47270 * 59.99722 * 11 10 8 40 40 H 1.09001 * 109.47448 * 299.99986 * 12 11 10 41 41 H 1.08996 * 109.47284 * 60.00102 * 12 11 10 42 42 H 1.09001 * 109.46750 * 300.00416 * 13 12 11 43 43 H 1.09008 * 109.47086 * 59.99951 * 13 12 11 44 44 H 0.96998 * 120.00159 * 179.97438 * 17 16 14 45 45 H 1.08995 * 109.46817 * 180.02562 * 22 5 4 46 46 H 1.09000 * 109.47059 * 300.00457 * 22 5 4 47 47 H 1.09002 * 109.47306 * 179.97438 * 23 22 5 48 48 H 1.09009 * 109.47324 * 59.99780 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0795 0.7212 -1.2502 6 7 3.5908 1.4120 -2.4461 7 6 2.7632 2.6133 -2.3113 8 6 3.9025 0.9422 -3.6703 9 8 4.5834 -0.0551 -3.7819 10 6 3.3992 1.6526 -4.9005 11 6 3.8927 0.9203 -6.1499 12 6 3.3813 1.6410 -7.3988 13 6 3.8753 0.9091 -8.6483 14 6 3.3711 1.6186 -9.8785 15 1 2.7591 2.5029 -9.7791 16 6 3.6910 1.1389 -11.1309 17 7 4.4358 0.0617 -11.2519 18 14 3.0654 2.0180 -12.6557 19 1 4.0500 3.0489 -13.0717 20 1 2.8837 1.0352 -13.7542 21 1 1.7652 2.6686 -12.3535 22 6 3.5695 -0.7213 -1.2502 23 6 2.0395 -0.7212 -1.2495 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6768 1.9563 0.8899 29 1 1.6767 1.9562 -0.8900 30 1 3.9338 0.9284 0.8891 31 1 3.9334 2.4700 -0.0011 32 1 5.1696 0.7208 -1.2504 33 1 1.7103 2.3381 -2.3748 34 1 2.9585 3.0827 -1.3472 35 1 3.0048 3.3127 -3.1116 36 1 2.3094 1.6646 -4.8927 37 1 3.7739 2.6761 -4.9079 38 1 4.9826 0.9085 -6.1575 39 1 3.5183 -0.1035 -6.1427 40 1 2.2914 1.6524 -7.3911 41 1 3.7553 2.6647 -7.4063 42 1 4.9652 0.8980 -8.6558 43 1 3.5016 -0.1149 -8.6411 44 1 4.6606 -0.2760 -12.1330 45 1 3.9328 -1.2351 -2.1401 46 1 3.9331 -1.2352 -0.3603 47 1 1.6761 -1.7488 -1.2499 48 1 1.6758 -0.2072 -2.1393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588255150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:06 Heat of formation + Delta-G solvation = -81.503279 kcal Electronic energy + Delta-G solvation = -22809.404896 eV Core-core repulsion = 19669.462444 eV Total energy + Delta-G solvation = -3139.942452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69869 -39.32323 -36.64071 -35.93793 -34.64052 -32.95544 -32.01191 -31.16557 -28.24445 -27.61040 -26.23109 -24.28826 -23.62455 -22.22970 -21.67988 -20.82622 -19.66014 -18.42402 -17.73945 -17.27444 -16.92950 -16.51363 -16.30948 -15.56323 -15.34325 -15.05907 -14.78576 -14.53651 -14.26758 -14.10247 -13.75823 -13.60383 -13.48496 -13.29844 -13.16460 -12.90747 -12.80371 -12.69128 -12.39771 -12.33867 -12.31627 -12.15192 -12.12279 -11.85461 -11.38957 -11.35302 -11.19089 -11.12632 -11.08167 -10.98791 -10.55449 -10.41084 -9.53545 -8.18880 -6.31381 1.40135 1.42732 1.53848 1.69129 2.07248 2.41933 3.13743 3.56390 3.80252 3.81917 3.88454 4.03796 4.11406 4.17562 4.23307 4.33106 4.46747 4.48849 4.57443 4.58591 4.63697 4.65490 4.75535 4.79048 4.82676 4.85793 4.86584 4.94289 5.00719 5.12446 5.12969 5.17745 5.20249 5.25194 5.28336 5.32103 5.36756 5.41933 5.46445 5.55985 5.58669 5.77179 5.78303 5.87391 6.24870 6.45536 6.87090 7.26909 7.38365 8.93530 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.002789 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.925285 B =10037.602212 C =10151.184263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.117 4.117 5 C 0.147 3.853 6 N -0.605 5.605 7 C 0.058 3.942 8 C 0.506 3.494 9 O -0.584 6.584 10 C -0.126 4.126 11 C -0.094 4.094 12 C -0.094 4.094 13 C 0.019 3.981 14 C -0.542 4.542 15 H 0.067 0.933 16 C -0.007 4.007 17 N -0.939 5.939 18 Si 0.971 3.029 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.258 1.258 22 C -0.137 4.137 23 C -0.105 4.105 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.060 0.940 41 H 0.061 0.939 42 H -0.016 1.016 43 H -0.017 1.017 44 H 0.263 0.737 45 H 0.046 0.954 46 H 0.076 0.924 47 H 0.050 0.950 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 7.098 28.724 30.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.176 4.176 4 C -0.154 4.154 5 C 0.044 3.956 6 N -0.338 5.338 7 C -0.083 4.083 8 C 0.296 3.704 9 O -0.464 6.464 10 C -0.166 4.166 11 C -0.132 4.132 12 C -0.132 4.132 13 C -0.018 4.018 14 C -0.580 4.580 15 H 0.085 0.915 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.794 3.206 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.182 1.182 22 C -0.176 4.176 23 C -0.143 4.143 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.002 0.998 43 H 0.001 0.999 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.069 0.931 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.355 6.486 28.583 30.219 hybrid contribution 0.287 -0.514 -1.243 1.375 sum -7.067 5.972 27.341 28.864 Atomic orbital electron populations 1.21806 0.94783 1.01560 1.02121 1.21094 0.95720 0.96624 0.97025 1.22265 0.94303 0.96463 1.04585 1.21805 0.96922 1.01178 0.95503 1.21039 0.97223 0.92136 0.85192 1.47990 1.52109 1.28963 1.04714 1.22476 0.94686 0.86003 1.05139 1.21127 0.79401 0.84203 0.85658 1.90649 1.40714 1.27854 1.87215 1.21689 1.03487 1.00988 0.90396 1.21232 0.99784 0.98589 0.93633 1.21437 1.00042 0.98842 0.92855 1.19049 0.94450 0.94646 0.93630 1.21756 1.31965 1.12144 0.92101 0.91506 1.26112 0.95332 0.95825 1.03185 1.70138 1.38970 1.24381 1.24443 0.85368 0.79222 0.78112 0.77858 1.19652 1.20942 1.18219 1.21897 0.96788 0.96845 1.02037 1.21461 0.94452 0.99885 0.98489 0.92948 0.93339 0.91493 0.91205 0.90094 0.89062 0.89595 0.89565 0.92763 0.90875 0.87648 0.90235 0.86976 0.86641 0.94028 0.94187 0.92146 0.92027 0.99795 0.99860 0.92844 0.93478 0.90509 0.93114 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.19 71.98 0.66 -1.04 16 2 C -0.09 -1.11 2.72 -10.79 -0.03 -1.14 16 3 C -0.14 -1.33 4.55 30.59 0.14 -1.19 16 4 C -0.12 -1.27 4.91 30.60 0.15 -1.12 16 5 C 0.15 2.82 2.95 44.99 0.13 2.95 16 6 N -0.60 -12.20 2.25 -822.57 -1.85 -14.05 16 7 C 0.06 0.66 8.00 127.77 1.02 1.68 16 8 C 0.51 14.65 7.38 87.66 0.65 15.29 16 9 O -0.58 -22.63 14.02 -3.02 -0.04 -22.67 16 10 C -0.13 -3.34 4.33 29.85 0.13 -3.21 16 11 C -0.09 -3.56 4.50 30.59 0.14 -3.43 16 12 C -0.09 -3.96 5.15 30.59 0.16 -3.80 16 13 C 0.02 1.09 4.97 29.85 0.15 1.24 16 14 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 15 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 16 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 17 N -0.94 -59.86 13.29 21.45 0.28 -59.58 16 18 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 22 C -0.14 -3.03 5.23 30.59 0.16 -2.87 16 23 C -0.11 -2.01 5.04 30.59 0.15 -1.86 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.84 3.66 -2.39 -0.01 0.83 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.69 6.89 -2.39 -0.02 0.68 16 32 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.07 0.71 6.70 -2.38 -0.02 0.70 16 34 H 0.11 0.73 4.95 -2.39 -0.01 0.72 16 35 H 0.08 0.79 6.69 -2.39 -0.02 0.77 16 36 H 0.11 2.45 8.11 -2.39 -0.02 2.43 16 37 H 0.12 2.46 7.42 -2.39 -0.02 2.44 16 38 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 39 H 0.04 1.66 8.10 -2.38 -0.02 1.64 16 40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 42 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 44 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 45 H 0.05 1.44 6.10 -2.39 -0.01 1.42 16 46 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.05 1.03 7.60 -2.38 -0.02 1.01 16 Total: -1.00 -75.94 360.14 5.62 -70.32 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.90 Total: 8.87 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 4.31 Total: -30.09 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -1.57 Total: -73.63 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.04 Total: -22.67 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -75.94 5.62 -70.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588255150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.187 kcal (2) G-P(sol) polarization free energy of solvation -75.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds