Wall clock time and date at job start Tue Mar 31 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 C 1.52996 * 109.47163 * 120.00671 * 2 1 3 5 5 C 1.52994 * 109.47242 * 67.56677 * 4 2 1 6 6 H 1.08997 * 110.00078 * 51.10515 * 5 4 2 7 7 C 1.54322 * 109.88351 * 290.01062 * 5 4 2 8 8 C 1.55158 * 102.94222 * 218.39159 * 7 5 4 9 9 C 1.54691 * 101.67743 * 35.33227 * 8 7 5 10 10 N 1.47019 * 109.88395 * 172.19962 * 5 4 2 11 11 C 1.34782 * 125.64894 * 298.32470 * 10 5 4 12 12 O 1.21279 * 119.99637 * 354.72356 * 11 10 5 13 13 C 1.50700 * 120.00007 * 174.72335 * 11 10 5 14 14 C 1.52994 * 109.47179 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47386 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47034 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.46827 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00060 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00347 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00433 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99417 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47115 * 269.99354 * 21 19 17 23 23 H 1.48501 * 109.47646 * 29.99669 * 21 19 17 24 24 H 1.48496 * 109.47026 * 149.99757 * 21 19 17 25 25 H 1.09005 * 109.46993 * 48.28510 * 1 2 3 26 26 H 1.09000 * 109.47431 * 168.27800 * 1 2 3 27 27 H 1.08996 * 109.47252 * 288.28306 * 1 2 3 28 28 H 1.09008 * 109.47121 * 240.00631 * 2 1 3 29 29 H 1.09000 * 109.47283 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47416 * 300.00438 * 3 2 1 31 31 H 1.09008 * 109.46612 * 60.00320 * 3 2 1 32 32 H 1.09004 * 109.46560 * 307.56576 * 4 2 1 33 33 H 1.09003 * 109.46812 * 187.56851 * 4 2 1 34 34 H 1.09000 * 110.72209 * 336.75394 * 7 5 4 35 35 H 1.09001 * 110.72313 * 99.85315 * 7 5 4 36 36 H 1.08995 * 111.00857 * 153.57715 * 8 7 5 37 37 H 1.09001 * 111.00085 * 277.38962 * 8 7 5 38 38 H 1.09004 * 110.39028 * 204.36654 * 9 8 7 39 39 H 1.09000 * 110.23318 * 82.11406 * 9 8 7 40 40 H 1.09004 * 109.46823 * 60.00332 * 13 11 10 41 41 H 1.09004 * 109.47446 * 300.00332 * 13 11 10 42 42 H 1.08997 * 109.47122 * 60.00123 * 14 13 11 43 43 H 1.09000 * 109.47153 * 300.00016 * 14 13 11 44 44 H 1.08997 * 109.47070 * 59.99869 * 15 14 13 45 45 H 1.09000 * 109.46807 * 300.00007 * 15 14 13 46 46 H 1.08997 * 109.47342 * 59.99983 * 16 15 14 47 47 H 1.09000 * 109.47286 * 299.99661 * 16 15 14 48 48 H 0.96996 * 120.00207 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6910 -2.2082 1.1576 6 1 2.0215 -2.6104 0.2000 7 6 0.1674 -2.4000 1.3098 8 6 0.0631 -3.6962 2.1563 9 6 1.2881 -3.5591 3.0909 10 7 2.3353 -2.9416 2.2570 11 6 3.6635 -3.0382 2.4647 12 8 4.4390 -2.5729 1.6567 13 6 4.1849 -3.7243 3.7010 14 6 5.7145 -3.6972 3.6926 15 6 6.2439 -4.3944 4.9475 16 6 7.7736 -4.3667 4.9393 17 6 8.2950 -5.0528 6.1756 18 1 7.6044 -5.4675 6.8950 19 6 9.6537 -5.1522 6.3880 20 7 10.1087 -5.7514 7.4666 21 14 10.8482 -4.4355 5.1434 22 1 11.1828 -5.4662 4.1280 23 1 10.2238 -3.2660 4.4743 24 1 12.0878 -4.0046 5.8383 25 1 -0.3633 0.6839 -0.7672 26 1 -0.3634 -1.0062 -0.2088 27 1 -0.3633 0.3224 0.9757 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.5703 -0.2916 2.1340 33 1 3.1216 -0.6056 1.3193 34 1 -0.2765 -1.5570 1.8392 35 1 -0.3037 -2.5333 0.3359 36 1 -0.8654 -3.7167 2.7267 37 1 0.1524 -4.5818 1.5272 38 1 1.6107 -4.5398 3.4405 39 1 1.0470 -2.9145 3.9362 40 1 3.8402 -4.7583 3.7154 41 1 3.8168 -3.2063 4.5867 42 1 6.0595 -2.6634 3.6780 43 1 6.0822 -4.2155 2.8070 44 1 5.8989 -5.4282 4.9617 45 1 5.8762 -3.8764 5.8333 46 1 8.1183 -3.3328 4.9254 47 1 8.1417 -4.8844 4.0535 48 1 11.0646 -5.8209 7.6161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588335520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:09 Heat of formation + Delta-G solvation = -72.275876 kcal Electronic energy + Delta-G solvation = -22341.335649 eV Core-core repulsion = 19201.793327 eV Total energy + Delta-G solvation = -3139.542321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48968 -38.12252 -36.09298 -34.98899 -32.60572 -31.87977 -30.61563 -29.72742 -27.65668 -26.01256 -25.88107 -23.25696 -21.95023 -20.88357 -20.43440 -19.99149 -18.90993 -17.16675 -16.57713 -16.50734 -15.61364 -15.23105 -15.02576 -14.26746 -14.21806 -14.08731 -13.99486 -13.61024 -13.30448 -12.89174 -12.77203 -12.59939 -12.43799 -12.34013 -12.04906 -12.01388 -11.74662 -11.67441 -11.15174 -11.13999 -11.10415 -10.92548 -10.83803 -10.69608 -10.67789 -10.49984 -9.89276 -9.75887 -9.61978 -9.36973 -9.09587 -8.74008 -8.47486 -5.98756 -3.96042 2.70074 2.87745 3.36958 3.43819 3.50282 4.16998 4.23423 4.39463 4.51949 4.62101 4.70295 4.71583 4.84455 5.02574 5.03424 5.18480 5.26768 5.27792 5.30764 5.34820 5.36550 5.39165 5.42916 5.44643 5.51210 5.55630 5.67866 5.72143 5.78111 5.81547 5.89053 5.99246 6.06545 6.07930 6.13305 6.17213 6.32098 6.45791 6.71529 6.85104 7.01995 7.40602 7.45565 7.53626 7.86855 8.22848 8.60397 9.06312 9.64757 11.14779 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026161 B = 0.002903 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.034951 B = 9643.011313 C =10467.397937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.125 4.125 5 C 0.138 3.862 6 H 0.072 0.928 7 C -0.130 4.130 8 C -0.137 4.137 9 C 0.099 3.901 10 N -0.623 5.623 11 C 0.528 3.472 12 O -0.534 6.534 13 C -0.134 4.134 14 C -0.106 4.106 15 C -0.102 4.102 16 C -0.015 4.015 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.264 1.264 24 H -0.289 1.289 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.015 0.985 47 H 0.011 0.989 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.833 9.355 -14.195 30.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.163 4.163 5 C 0.035 3.965 6 H 0.090 0.910 7 C -0.167 4.167 8 C -0.175 4.175 9 C -0.024 4.024 10 N -0.359 5.359 11 C 0.319 3.681 12 O -0.410 6.410 13 C -0.174 4.174 14 C -0.144 4.144 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.189 1.189 24 H -0.215 1.215 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.140 9.550 -14.513 30.559 hybrid contribution 0.682 0.273 -0.463 0.868 sum -24.458 9.823 -14.976 30.314 Atomic orbital electron populations 1.22278 0.95450 1.02337 1.01562 1.21039 0.95690 0.96269 0.98179 1.21830 1.01283 0.95799 1.01489 1.22021 1.02710 0.93846 0.97769 1.21549 0.91987 0.92073 0.90893 0.90952 1.23060 0.94778 0.98058 1.00832 1.22799 0.97862 0.98499 0.98376 1.22273 0.87627 0.98514 0.94013 1.48701 1.05314 1.52699 1.29207 1.20760 0.79895 0.79392 0.88100 1.90690 1.55263 1.48363 1.46699 1.21767 0.99249 1.01264 0.95130 1.21487 0.90988 1.01966 0.99953 1.21471 0.98322 0.99085 0.95079 1.19575 0.91749 0.96785 0.97170 1.21189 0.92449 1.36321 1.05708 0.91116 1.25043 0.98456 0.94833 0.95297 1.69919 1.13834 1.43985 1.26844 0.86773 0.80508 0.80301 0.81718 1.20319 1.18891 1.21473 0.93102 0.91504 0.92685 0.91198 0.92553 0.92790 0.92812 0.91890 0.90519 0.90034 0.89761 0.89795 0.90629 0.90291 0.91338 0.89225 0.89123 0.91826 0.91832 0.92901 0.92874 0.96624 0.97065 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 7.76 37.16 0.29 -0.69 16 2 C -0.09 -0.75 2.89 -90.62 -0.26 -1.01 16 3 C -0.15 -1.17 9.16 37.16 0.34 -0.83 16 4 C -0.13 -1.24 4.39 -26.74 -0.12 -1.35 16 5 C 0.14 1.32 2.84 -66.96 -0.19 1.13 16 6 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 7 C -0.13 -0.80 4.48 -24.90 -0.11 -0.91 16 8 C -0.14 -0.79 7.07 -24.70 -0.17 -0.96 16 9 C 0.10 0.76 6.64 -2.65 -0.02 0.74 16 10 N -0.62 -6.88 3.07 -163.16 -0.50 -7.38 16 11 C 0.53 7.63 7.55 -10.98 -0.08 7.55 16 12 O -0.53 -9.73 15.16 5.56 0.08 -9.65 16 13 C -0.13 -1.82 4.80 -27.89 -0.13 -1.96 16 14 C -0.11 -1.85 4.50 -26.73 -0.12 -1.97 16 15 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 16 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 17 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 18 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 19 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.91 -28.63 13.96 55.43 0.77 -27.86 16 21 Si 0.88 22.61 27.47 -169.99 -4.67 17.94 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H 0.05 0.29 8.10 -51.93 -0.42 -0.13 16 26 H 0.07 0.35 4.87 -51.93 -0.25 0.10 16 27 H 0.05 0.32 7.42 -51.93 -0.39 -0.06 16 28 H 0.07 0.60 8.10 -51.92 -0.42 0.18 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.06 0.60 7.86 -51.93 -0.41 0.19 16 33 H 0.08 1.01 6.83 -51.93 -0.35 0.65 16 34 H 0.08 0.46 6.37 -51.93 -0.33 0.13 16 35 H 0.08 0.43 6.49 -51.93 -0.34 0.09 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.56 7.51 -51.93 -0.39 0.17 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 1.06 7.76 -51.93 -0.40 0.66 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 43 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 47 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 48 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -33.84 366.76 -9.17 -43.01 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -9.12 Total: -4.88 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.26 Total: -16.71 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.27 Total: -35.24 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.67 Total: 17.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.84 -9.17 -43.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588335520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.267 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds