Wall clock time and date at job start Tue Mar 31 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46949 * 2 1 4 4 C 1.53005 * 109.45699 * 299.96574 * 3 2 1 5 5 C 1.53046 * 109.45777 * 179.97438 * 3 2 1 6 6 C 1.53190 * 109.31163 * 178.61365 * 5 3 2 7 7 N 1.46923 * 108.77967 * 54.62886 * 6 5 3 8 8 C 1.34777 * 120.63207 * 126.36881 * 7 6 5 9 9 O 1.21288 * 119.99593 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99868 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47023 * 90.00014 * 18 16 14 20 20 H 1.48496 * 109.47251 * 210.00457 * 18 16 14 21 21 H 1.48498 * 109.47139 * 330.00202 * 18 16 14 22 22 C 1.46927 * 118.73975 * 306.64960 * 7 6 5 23 23 C 1.52761 * 109.00942 * 53.30086 * 22 7 6 24 24 H 1.09001 * 109.46525 * 60.00731 * 1 2 3 25 25 H 1.09002 * 109.47068 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47244 * 300.00776 * 1 2 3 27 27 H 1.08993 * 109.47244 * 239.99224 * 2 1 3 28 28 H 1.09001 * 109.46525 * 119.99269 * 2 1 3 29 29 H 1.09004 * 109.47166 * 300.02794 * 4 3 2 30 30 H 1.08992 * 109.46824 * 60.03335 * 4 3 2 31 31 H 1.08994 * 109.46843 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.50003 * 58.66007 * 5 3 2 33 33 H 1.09003 * 109.51897 * 298.57667 * 5 3 2 34 34 H 1.09006 * 109.58235 * 294.84312 * 6 5 3 35 35 H 1.09000 * 109.58420 * 174.42128 * 6 5 3 36 36 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 37 37 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 38 38 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 39 39 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 40 40 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 41 41 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 42 42 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 43 43 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 44 44 H 0.96996 * 119.99309 * 179.97438 * 17 16 14 45 45 H 1.08995 * 109.58981 * 173.14234 * 22 7 6 46 46 H 1.09000 * 109.58271 * 293.56598 * 22 7 6 47 47 H 1.09004 * 109.56405 * 185.55408 * 23 22 7 48 48 H 1.09002 * 109.35858 * 65.50385 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5305 2.1632 -1.2498 5 6 3.5705 1.4422 0.0006 6 6 4.0774 2.8874 -0.0343 7 7 3.4736 3.6276 1.0820 8 6 4.2461 4.3022 1.9563 9 8 5.4519 4.3025 1.8254 10 6 3.6119 5.0562 3.0966 11 6 4.7025 5.7290 3.9325 12 6 4.0584 6.4939 5.0905 13 6 5.1491 7.1673 5.9260 14 6 4.5148 7.9212 7.0663 15 1 3.4411 7.9207 7.1831 16 6 5.3051 8.6119 7.9604 17 7 4.7514 9.2703 8.9552 18 14 7.1621 8.6123 7.7589 19 1 7.5666 9.7548 6.9006 20 1 7.8046 8.7423 9.0913 21 1 7.5915 7.3402 7.1243 22 6 2.0119 3.6132 1.2307 23 6 1.5278 2.1644 1.2483 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.8939 1.6488 -2.1395 30 1 0.4406 2.1635 -1.2500 31 1 1.8941 3.1907 -1.2502 32 1 3.9346 0.9076 -0.8766 33 1 3.9342 0.9508 0.9031 34 1 3.7915 3.3521 -0.9780 35 1 5.1628 2.8964 0.0658 36 1 3.0496 4.3631 3.7223 37 1 2.9382 5.8157 2.6997 38 1 5.2644 6.4222 3.3065 39 1 5.3764 4.9697 4.3293 40 1 3.3843 7.2532 4.6941 41 1 3.4969 5.8005 5.7163 42 1 5.8235 6.4083 6.3225 43 1 5.7104 7.8608 5.2999 44 1 5.3075 9.7558 9.5844 45 1 1.7349 4.1010 2.1652 46 1 1.5542 4.1383 0.3924 47 1 0.4380 2.1439 1.2590 48 1 1.9103 1.6664 2.1393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588337862.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:20 Heat of formation + Delta-G solvation = -75.787719 kcal Electronic energy + Delta-G solvation = -22483.840811 eV Core-core repulsion = 19344.146205 eV Total energy + Delta-G solvation = -3139.694606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.70809 -38.72113 -35.24013 -34.97363 -32.67780 -31.83222 -30.81281 -29.97970 -28.00766 -26.37902 -25.13256 -23.71321 -22.63371 -21.51412 -20.02763 -19.68467 -18.15938 -17.07610 -16.52981 -15.95217 -15.89270 -15.35409 -15.21110 -14.73459 -14.55072 -14.17055 -13.96032 -13.66228 -13.35863 -12.89766 -12.61073 -12.48777 -12.44327 -12.28744 -12.16042 -11.97422 -11.92620 -11.71509 -11.48954 -11.27679 -11.08929 -10.86320 -10.74321 -10.62343 -10.52753 -10.50613 -9.87660 -9.76371 -9.62017 -9.37720 -9.09638 -8.73204 -8.47512 -5.98868 -3.96131 2.68895 2.89891 3.36919 3.43781 3.50234 4.22873 4.31146 4.31524 4.51887 4.60348 4.75531 4.83613 4.91711 5.00119 5.01544 5.14735 5.16389 5.22211 5.27138 5.31487 5.34615 5.36285 5.41413 5.50214 5.56611 5.60307 5.66141 5.69775 5.75333 5.75983 5.84197 5.84734 5.98563 6.06076 6.13217 6.17969 6.37488 6.47779 6.71423 6.85086 7.01857 7.32396 7.40798 7.53534 7.86813 8.21820 8.60279 9.06193 9.64690 11.14660 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035150 B = 0.002733 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.390324 B =10242.991832 C =10686.134617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.061 4.061 4 C -0.149 4.149 5 C -0.123 4.123 6 C 0.109 3.891 7 N -0.617 5.617 8 C 0.515 3.485 9 O -0.539 6.539 10 C -0.138 4.138 11 C -0.106 4.106 12 C -0.102 4.102 13 C -0.016 4.016 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.264 1.264 22 C 0.104 3.896 23 C -0.128 4.128 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.520 -18.919 -22.567 30.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.061 4.061 4 C -0.206 4.206 5 C -0.162 4.162 6 C -0.013 4.013 7 N -0.352 5.352 8 C 0.304 3.696 9 O -0.416 6.416 10 C -0.177 4.177 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.019 4.019 23 C -0.166 4.166 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.098 0.902 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.819 -18.796 -22.477 30.599 hybrid contribution 0.825 0.021 -0.011 0.825 sum -7.994 -18.775 -22.488 30.367 Atomic orbital electron populations 1.21896 0.95841 1.01517 1.02125 1.21560 0.96008 0.95537 1.01926 1.20538 0.94857 0.95299 0.95393 1.22038 1.01201 1.00552 0.96760 1.21975 0.94903 0.96656 1.02622 1.21565 0.99699 0.91058 0.88987 1.48172 1.06915 1.51430 1.28727 1.21074 0.87120 0.78535 0.82852 1.90683 1.14609 1.62082 1.74184 1.21793 1.00703 0.99924 0.95326 1.21489 0.96500 0.99534 0.96883 1.21472 0.99139 0.98244 0.95113 1.19577 0.94842 0.95595 0.95281 1.21187 0.95363 1.29882 1.09223 0.91114 1.25045 0.98675 0.94930 0.94993 1.69925 1.35611 1.33415 1.15633 0.86772 0.86118 0.79136 0.77272 1.20321 1.21471 1.18890 1.21714 0.79920 0.97287 1.02931 1.21985 1.01159 0.95360 0.98069 0.92411 0.93005 0.92323 0.92036 0.92028 0.92694 0.92211 0.92188 0.90907 0.91485 0.91622 0.89154 0.89100 0.89094 0.91830 0.91856 0.92894 0.92879 0.96631 0.97066 0.92837 0.89248 0.91212 0.90241 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.21 37.16 0.34 -0.47 16 2 C -0.11 -0.65 4.99 -26.73 -0.13 -0.79 16 3 C -0.06 -0.38 0.54 -154.47 -0.08 -0.47 16 4 C -0.15 -0.85 7.36 37.16 0.27 -0.57 16 5 C -0.12 -0.94 4.91 -26.61 -0.13 -1.07 16 6 C 0.11 1.05 5.97 -3.71 -0.02 1.03 16 7 N -0.62 -6.62 2.98 -173.03 -0.52 -7.13 16 8 C 0.51 7.31 7.70 -10.99 -0.08 7.22 16 9 O -0.54 -9.81 15.40 5.55 0.09 -9.72 16 10 C -0.14 -1.83 4.05 -27.89 -0.11 -1.94 16 11 C -0.11 -1.84 4.50 -26.73 -0.12 -1.96 16 12 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 13 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 14 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 15 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.59 13.96 55.43 0.77 -27.81 16 18 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 22 C 0.10 0.81 5.85 -3.93 -0.02 0.79 16 23 C -0.13 -0.85 4.57 -26.84 -0.12 -0.97 16 24 H 0.06 0.28 6.43 -51.93 -0.33 -0.05 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.30 6.40 -51.93 -0.33 -0.03 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.31 6.43 -51.93 -0.33 -0.03 16 31 H 0.06 0.38 4.99 -51.93 -0.26 0.12 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.55 6.69 -51.93 -0.35 0.21 16 35 H 0.09 1.05 7.01 -51.93 -0.36 0.69 16 36 H 0.09 1.05 7.68 -51.93 -0.40 0.65 16 37 H 0.09 1.05 7.95 -51.93 -0.41 0.64 16 38 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 39 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 43 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 45 H 0.09 0.65 5.93 -51.93 -0.31 0.35 16 46 H 0.07 0.47 6.70 -51.93 -0.35 0.13 16 47 H 0.08 0.44 6.36 -51.93 -0.33 0.11 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -33.62 357.63 -8.60 -42.22 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -8.77 Total: -5.25 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -0.90 Total: -15.59 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.26 Total: -34.94 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.62 -8.60 -42.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588337862.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.567 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds