Wall clock time and date at job start Tue Mar 31 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46662 * 2 1 4 4 C 1.53001 * 109.47072 * 119.99515 * 2 1 3 5 5 C 1.53043 * 109.44748 * 59.97226 * 4 2 1 6 6 C 1.53191 * 109.31132 * 181.37889 * 5 4 2 7 7 N 1.46921 * 108.77411 * 305.35957 * 6 5 4 8 8 C 1.34777 * 120.63225 * 233.58641 * 7 6 5 9 9 O 1.21282 * 119.99945 * 180.02562 * 8 7 6 10 10 C 1.50700 * 119.99997 * 0.02846 * 8 7 6 11 11 C 1.52995 * 109.46979 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.47048 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47048 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46979 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00008 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99978 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00276 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00138 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47213 * 59.99562 * 18 16 14 20 20 H 1.48502 * 109.47545 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47145 * 299.99541 * 18 16 14 22 22 C 1.46925 * 118.73795 * 53.61317 * 7 6 5 23 23 C 1.53046 * 109.46008 * 180.02562 * 4 2 1 24 24 H 1.09008 * 109.46946 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47337 * 299.99946 * 1 2 3 26 26 H 1.09003 * 109.46920 * 60.00572 * 1 2 3 27 27 H 1.08992 * 109.47337 * 240.00054 * 2 1 3 28 28 H 1.09005 * 109.47243 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47231 * 299.99847 * 3 2 1 30 30 H 1.09002 * 109.47199 * 59.99962 * 3 2 1 31 31 H 1.09002 * 109.46300 * 300.00395 * 4 2 1 32 32 H 1.09004 * 109.49679 * 301.32867 * 5 4 2 33 33 H 1.08994 * 109.49744 * 61.42383 * 5 4 2 34 34 H 1.09002 * 109.58035 * 185.57574 * 6 5 4 35 35 H 1.09002 * 109.58818 * 65.15445 * 6 5 4 36 36 H 1.08997 * 109.46971 * 299.99626 * 10 8 7 37 37 H 1.08999 * 109.47199 * 59.99382 * 10 8 7 38 38 H 1.08997 * 109.47190 * 299.99769 * 11 10 8 39 39 H 1.08999 * 109.47434 * 59.99802 * 11 10 8 40 40 H 1.08997 * 109.47069 * 300.00005 * 12 11 10 41 41 H 1.08992 * 109.46871 * 60.00036 * 12 11 10 42 42 H 1.09000 * 109.47444 * 300.00377 * 13 12 11 43 43 H 1.08999 * 109.47434 * 59.99965 * 13 12 11 44 44 H 0.97000 * 119.99793 * 180.02562 * 17 16 14 45 45 H 1.09003 * 109.59222 * 186.59958 * 22 7 6 46 46 H 1.09006 * 109.70276 * 66.24587 * 22 7 6 47 47 H 1.08996 * 109.49923 * 298.58843 * 23 4 2 48 48 H 1.09001 * 109.49381 * 58.67936 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5290 -2.1637 1.2492 6 6 2.0127 -2.8726 2.5182 7 7 3.4745 -2.7504 2.6000 8 6 4.2479 -3.8442 2.7478 9 8 5.4535 -3.7300 2.8145 10 6 3.6147 -5.2093 2.8300 11 6 4.7062 -6.2687 2.9943 12 6 4.0632 -7.6546 3.0784 13 6 5.1547 -8.7141 3.2422 14 6 4.5215 -10.0791 3.3244 15 1 3.4479 -10.1808 3.2653 16 6 5.3127 -11.1981 3.4750 17 7 6.6201 -11.0744 3.5464 18 14 4.5278 -12.8902 3.5762 19 1 3.7631 -13.1564 2.3314 20 1 5.5871 -13.9186 3.7364 21 1 3.6092 -12.9409 4.7419 22 6 4.0773 -1.4130 2.5183 23 6 3.5704 -0.7204 1.2494 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4427 0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6765 -0.2072 2.1392 32 1 0.4392 -2.1637 1.2255 33 1 1.9123 -2.6854 0.3724 34 1 1.7359 -3.9261 2.4762 35 1 1.5575 -2.4076 3.3926 36 1 2.9404 -5.2460 3.6856 37 1 3.0534 -5.4050 1.9164 38 1 5.3801 -6.2318 2.1385 39 1 5.2678 -6.0731 3.9078 40 1 3.3895 -7.6912 3.9345 41 1 3.5014 -7.8504 2.1653 42 1 5.8282 -8.6773 2.3859 43 1 5.7170 -8.5184 4.1552 44 1 7.1767 -11.8618 3.6520 45 1 5.1628 -1.5032 2.4766 46 1 3.7927 -0.8276 3.3927 47 1 3.9346 -1.2557 0.3725 48 1 3.9337 0.3070 1.2258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588621481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:33 Heat of formation + Delta-G solvation = -84.594038 kcal Electronic energy + Delta-G solvation = -22146.321265 eV Core-core repulsion = 19006.244788 eV Total energy + Delta-G solvation = -3140.076477 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38408 -38.45108 -35.60107 -34.87684 -32.70744 -31.73763 -31.34012 -29.54561 -27.59693 -26.12508 -25.00341 -23.31557 -22.39828 -21.25439 -20.22026 -19.94487 -18.93179 -17.03557 -16.15230 -15.88915 -15.82544 -15.05317 -14.96111 -14.51126 -14.48663 -14.39518 -14.00903 -13.59650 -13.20024 -13.03589 -12.63934 -12.56187 -12.44007 -12.19779 -12.06609 -11.83438 -11.63053 -11.59008 -11.40053 -11.29566 -10.94614 -10.86191 -10.62530 -10.51650 -10.49598 -10.48240 -10.34575 -9.67930 -9.57642 -9.18664 -8.95976 -8.72129 -8.27839 -5.92700 -3.95261 2.75229 2.94826 3.36836 3.41113 3.43370 4.27133 4.31918 4.37327 4.50680 4.62308 4.73595 4.85229 4.93673 5.02581 5.08038 5.14120 5.19776 5.25733 5.33885 5.39474 5.41819 5.42575 5.45538 5.52443 5.55686 5.56841 5.63159 5.71564 5.74272 5.83143 5.88887 5.92658 5.98504 6.14417 6.17699 6.32951 6.44930 6.59748 6.87858 7.05437 7.23089 7.37994 7.76612 7.93271 8.08903 8.28099 8.50539 9.12277 9.68108 11.18588 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035205 B = 0.002499 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.156562 B =11200.204666 C =11725.337236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.082 4.082 5 C -0.133 4.133 6 C 0.106 3.894 7 N -0.620 5.620 8 C 0.514 3.486 9 O -0.537 6.537 10 C -0.137 4.137 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.110 3.890 23 C -0.131 4.131 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.483 26.049 -5.738 29.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.100 4.100 5 C -0.172 4.172 6 C -0.017 4.017 7 N -0.355 5.355 8 C 0.304 3.696 9 O -0.413 6.413 10 C -0.177 4.177 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.013 4.013 23 C -0.169 4.169 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.653 25.994 -5.674 29.462 hybrid contribution -0.495 -0.901 0.030 1.029 sum -13.149 25.093 -5.645 28.886 Atomic orbital electron populations 1.21902 0.95250 1.01920 1.01615 1.21141 0.95714 0.96128 0.98107 1.21901 1.01267 0.95930 1.01600 1.21192 0.95135 0.95472 0.98207 1.22063 1.01084 0.95685 0.98319 1.21750 0.79920 1.02089 0.97906 1.48198 1.06907 1.06575 1.73797 1.21102 0.87141 0.86403 0.74975 1.90687 1.14611 1.86620 1.49394 1.21812 1.00807 0.91500 1.03602 1.21459 0.96323 0.93581 1.02770 1.21644 0.99717 0.93380 0.99988 1.19092 0.93366 0.92062 0.97205 1.21246 0.93072 0.91782 1.49750 0.92821 1.25047 0.94846 0.99194 0.95525 1.69970 1.03536 1.29607 1.50371 0.86669 0.78855 0.83975 0.78532 1.20294 1.21334 1.20297 1.21530 0.99881 0.82666 0.97183 1.22039 0.95483 1.00905 0.98457 0.92274 0.92744 0.92892 0.91244 0.92338 0.92883 0.92755 0.91051 0.90353 0.91314 0.89205 0.91494 0.89253 0.89258 0.91855 0.91838 0.93508 0.93528 0.96606 0.96595 0.93004 0.89068 0.91953 0.91502 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.84 37.16 0.33 -0.47 16 2 C -0.09 -0.55 2.51 -90.62 -0.23 -0.78 16 3 C -0.15 -0.83 8.84 37.16 0.33 -0.50 16 4 C -0.08 -0.53 1.74 -90.57 -0.16 -0.69 16 5 C -0.13 -0.91 5.04 -26.61 -0.13 -1.04 16 6 C 0.11 0.86 6.34 -3.71 -0.02 0.83 16 7 N -0.62 -6.97 2.97 -172.77 -0.51 -7.48 16 8 C 0.51 7.66 7.70 -10.98 -0.08 7.58 16 9 O -0.54 -10.22 15.40 5.56 0.09 -10.13 16 10 C -0.14 -1.93 4.05 -27.89 -0.11 -2.04 16 11 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 12 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 13 C 0.02 0.53 4.97 -27.89 -0.14 0.40 16 14 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.11 1.10 6.43 -3.71 -0.02 1.08 16 23 C -0.13 -1.02 5.04 -26.61 -0.13 -1.15 16 24 H 0.06 0.31 6.40 -51.92 -0.33 -0.02 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.33 6.40 -51.93 -0.33 -0.01 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.43 6.36 -51.93 -0.33 0.10 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.68 5.93 -51.93 -0.31 0.37 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 1.09 7.94 -51.93 -0.41 0.68 16 37 H 0.09 1.09 7.69 -51.93 -0.40 0.69 16 38 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 39 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 45 H 0.09 1.10 7.01 -51.93 -0.36 0.74 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.50 6.36 -51.93 -0.33 0.17 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -33.40 368.57 -9.32 -42.72 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -9.11 Total: -5.45 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -1.05 Total: -15.21 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.22 Total: -34.54 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.40 -9.32 -42.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588621481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.877 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds