Wall clock time and date at job start Tue Mar 31 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46917 * 2 1 4 4 C 1.53009 * 109.52646 * 300.08388 * 3 2 1 5 5 C 1.53040 * 109.50171 * 60.16738 * 3 2 1 6 6 C 1.53037 * 109.54181 * 181.31648 * 5 3 2 7 7 C 1.53196 * 109.31040 * 298.63376 * 6 5 3 8 8 N 1.46920 * 108.77435 * 54.63686 * 7 6 5 9 9 C 1.34780 * 120.63221 * 126.41518 * 8 7 6 10 10 O 1.21277 * 120.00034 * 179.97438 * 9 8 7 11 11 C 1.50699 * 119.99862 * 359.97438 * 9 8 7 12 12 C 1.52995 * 109.47310 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47625 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47486 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47172 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99966 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99372 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00326 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47340 * 89.99666 * 19 17 15 21 21 H 1.48501 * 109.47346 * 210.00026 * 19 17 15 22 22 H 1.48506 * 109.47059 * 330.00138 * 19 17 15 23 23 C 1.46926 * 118.73951 * 306.38547 * 8 7 6 24 24 H 1.08995 * 109.47342 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46632 * 300.00031 * 1 2 3 26 26 H 1.08994 * 109.47518 * 59.99615 * 1 2 3 27 27 H 1.09001 * 109.46704 * 240.00452 * 2 1 3 28 28 H 1.08994 * 109.47518 * 120.00384 * 2 1 3 29 29 H 1.09005 * 109.46967 * 299.92074 * 4 3 2 30 30 H 1.08998 * 109.46943 * 59.92024 * 4 3 2 31 31 H 1.08998 * 109.47352 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.45820 * 61.29180 * 5 3 2 33 33 H 1.09003 * 109.45295 * 301.33399 * 5 3 2 34 34 H 1.08999 * 109.50017 * 178.67783 * 6 5 3 35 35 H 1.09004 * 109.49998 * 58.58381 * 6 5 3 36 36 H 1.08998 * 109.58545 * 174.42116 * 7 6 5 37 37 H 1.08999 * 109.58713 * 294.84595 * 7 6 5 38 38 H 1.08996 * 109.47093 * 300.00420 * 11 9 8 39 39 H 1.09003 * 109.47280 * 60.00303 * 11 9 8 40 40 H 1.09003 * 109.47159 * 300.00594 * 12 11 9 41 41 H 1.08998 * 109.47141 * 59.99809 * 12 11 9 42 42 H 1.09010 * 109.46776 * 300.00406 * 13 12 11 43 43 H 1.08998 * 109.47244 * 59.99594 * 13 12 11 44 44 H 1.08997 * 109.46858 * 299.99478 * 14 13 12 45 45 H 1.09003 * 109.46947 * 59.99605 * 14 13 12 46 46 H 0.97004 * 119.99311 * 180.02562 * 18 17 15 47 47 H 1.08998 * 109.58617 * 173.39731 * 23 8 7 48 48 H 1.08995 * 109.59240 * 293.82509 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5289 2.1656 -1.2478 5 6 1.5336 2.1634 1.2514 6 6 2.0159 3.6157 1.2360 7 6 3.5476 3.6410 1.2499 8 7 4.0441 2.8284 0.1311 9 6 4.9167 3.3435 -0.7576 10 8 5.3195 2.6623 -1.6766 11 6 5.3917 4.7659 -0.6094 12 6 6.3687 5.0977 -1.7391 13 6 6.8516 6.5416 -1.5883 14 6 7.8281 6.8735 -2.7184 15 6 8.3032 8.2960 -2.5702 16 1 7.9441 8.9028 -1.7521 17 6 9.1962 8.8229 -3.4791 18 7 9.6330 8.0841 -4.4756 19 14 9.7856 10.5858 -3.2950 20 1 11.0084 10.6135 -2.4528 21 1 10.0943 11.1470 -4.6347 22 1 8.7225 11.3984 -2.6509 23 6 3.5719 1.4433 -0.0001 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8922 1.6535 -2.1389 30 1 0.4389 2.1648 -1.2473 31 1 1.8923 3.1932 -1.2467 32 1 1.9183 1.6624 2.1397 33 1 0.4439 2.1428 1.2663 34 1 1.6354 4.1348 2.1157 35 1 1.6520 4.1104 0.3354 36 1 3.8971 4.6675 1.1392 37 1 3.9113 3.2284 2.1909 38 1 4.5374 5.4412 -0.6574 39 1 5.8940 4.8831 0.3508 40 1 7.2230 4.4224 -1.6907 41 1 5.8670 4.9804 -2.6996 42 1 5.9974 7.2172 -1.6365 43 1 7.3534 6.6585 -0.6279 44 1 8.6822 6.1981 -2.6706 45 1 7.3258 6.7568 -3.6787 46 1 10.2615 8.4546 -5.1148 47 1 3.9374 1.0197 -0.9355 48 1 3.9376 0.8514 0.8389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588624536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:42 Heat of formation + Delta-G solvation = -79.230000 kcal Electronic energy + Delta-G solvation = -22582.029197 eV Core-core repulsion = 19442.185323 eV Total energy + Delta-G solvation = -3139.843875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.65732 -38.46842 -35.21504 -34.88290 -32.60310 -32.23319 -30.60475 -29.49976 -27.47976 -26.13772 -25.27012 -23.84414 -22.46495 -21.85651 -19.99245 -19.10093 -18.52265 -16.99692 -16.17330 -15.91739 -15.78215 -15.31669 -15.14911 -14.52041 -14.42371 -14.22222 -14.00220 -13.57462 -13.19832 -13.08792 -12.59029 -12.42657 -12.29576 -12.13492 -11.91954 -11.80902 -11.63341 -11.56774 -11.39687 -11.09041 -10.96876 -10.92176 -10.64160 -10.50827 -10.50550 -10.47212 -10.35656 -9.67059 -9.58009 -9.18650 -8.95296 -8.67429 -8.28343 -5.93138 -3.95553 2.75661 2.94837 3.35341 3.41255 3.44488 4.27055 4.36305 4.47343 4.50511 4.66012 4.73421 4.84008 4.93100 4.99656 5.15749 5.18648 5.25619 5.33651 5.36892 5.40920 5.42435 5.49321 5.51051 5.57116 5.59119 5.63655 5.69776 5.76238 5.81774 5.84798 5.88823 5.94993 6.09355 6.17442 6.21005 6.32912 6.44899 6.59602 6.87661 7.05304 7.22930 7.39016 7.76631 7.93042 8.08616 8.28987 8.50338 9.12206 9.67899 11.18229 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.039983 B = 0.002645 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.132772 B =10584.251496 C =10860.221136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.075 4.075 4 C -0.141 4.141 5 C -0.109 4.109 6 C -0.139 4.139 7 C 0.106 3.894 8 N -0.617 5.617 9 C 0.515 3.485 10 O -0.536 6.536 11 C -0.138 4.138 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.519 4.519 16 H 0.054 0.946 17 C 0.054 3.946 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.120 3.880 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.091 0.909 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.126 -14.790 14.393 28.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.076 4.076 4 C -0.198 4.198 5 C -0.147 4.147 6 C -0.178 4.178 7 C -0.017 4.017 8 N -0.352 5.352 9 C 0.304 3.696 10 O -0.412 6.412 11 C -0.177 4.177 12 C -0.141 4.141 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.002 4.002 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.110 0.890 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.772 -15.140 13.729 28.437 hybrid contribution 0.328 0.976 0.157 1.042 sum -19.444 -14.164 13.886 27.776 Atomic orbital electron populations 1.21866 0.95703 1.01470 1.02105 1.21501 0.96135 0.95216 1.02147 1.20926 0.94953 0.95587 0.96122 1.21913 1.00550 1.00767 0.96584 1.21629 1.00803 0.95135 0.97116 1.21999 0.95433 0.97421 1.02908 1.21744 0.94211 0.96376 0.89355 1.48141 1.45484 1.13322 1.28236 1.21079 0.77711 0.89957 0.80843 1.90687 1.56436 1.61928 1.32136 1.21813 1.01267 0.92108 1.02548 1.21454 0.97646 0.98492 0.96516 1.21645 0.99500 0.92824 1.00757 1.19097 0.93637 0.96122 0.92888 1.21285 1.25555 0.97941 1.10988 0.92772 1.25048 0.96511 0.97692 0.95384 1.69984 1.32450 1.36324 1.14728 0.86609 0.79059 0.85110 0.77287 1.20717 1.21267 1.19934 1.21601 0.92704 0.82862 1.03058 0.92936 0.92489 0.92342 0.91703 0.91924 0.92672 0.92486 0.92276 0.91911 0.91367 0.90761 0.90937 0.89257 0.91506 0.89290 0.89275 0.91848 0.91863 0.93536 0.93519 0.96602 0.96597 0.93065 0.89037 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.21 37.16 0.34 -0.58 16 2 C -0.11 -0.76 4.99 -26.73 -0.13 -0.90 16 3 C -0.08 -0.60 0.55 -154.38 -0.08 -0.68 16 4 C -0.14 -1.29 7.64 37.16 0.28 -1.00 16 5 C -0.11 -0.72 4.40 -26.69 -0.12 -0.84 16 6 C -0.14 -0.95 5.74 -26.61 -0.15 -1.10 16 7 C 0.11 0.85 6.34 -3.71 -0.02 0.83 16 8 N -0.62 -6.87 2.41 -172.77 -0.42 -7.29 16 9 C 0.51 7.58 7.70 -10.98 -0.08 7.50 16 10 O -0.54 -10.09 15.39 5.56 0.09 -10.01 16 11 C -0.14 -1.92 4.05 -27.89 -0.11 -2.03 16 12 C -0.10 -1.90 4.50 -26.74 -0.12 -2.02 16 13 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 16 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 19 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 23 C 0.12 1.23 5.11 -3.71 -0.02 1.21 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.31 6.41 -51.93 -0.33 -0.02 16 26 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 31 H 0.06 0.62 5.97 -51.93 -0.31 0.31 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.41 6.36 -51.93 -0.33 0.08 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.56 6.33 -51.93 -0.33 0.23 16 36 H 0.09 0.68 5.93 -51.93 -0.31 0.37 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 39 H 0.09 1.09 7.94 -51.93 -0.41 0.67 16 40 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.09 1.14 7.00 -51.93 -0.36 0.77 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -33.25 363.33 -8.96 -42.21 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -8.91 Total: -4.79 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.91 Total: -15.59 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.32 Total: -34.35 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.25 -8.96 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588624536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.022 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds