Wall clock time and date at job start Tue Mar 31 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46917 * 2 1 4 4 C 1.53009 * 109.52646 * 300.08388 * 3 2 1 5 5 C 1.53040 * 109.50171 * 60.16738 * 3 2 1 6 6 C 1.53037 * 109.54181 * 181.31648 * 5 3 2 7 7 C 1.53196 * 109.31040 * 298.63376 * 6 5 3 8 8 N 1.46920 * 108.77435 * 54.63686 * 7 6 5 9 9 C 1.34780 * 120.63221 * 126.41518 * 8 7 6 10 10 O 1.21277 * 120.00034 * 179.97438 * 9 8 7 11 11 C 1.50699 * 119.99862 * 359.97438 * 9 8 7 12 12 C 1.52995 * 109.47310 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47625 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47486 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47172 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99966 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99372 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00326 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47340 * 89.99666 * 19 17 15 21 21 H 1.48501 * 109.47346 * 210.00026 * 19 17 15 22 22 H 1.48506 * 109.47059 * 330.00138 * 19 17 15 23 23 C 1.46926 * 118.73951 * 306.38547 * 8 7 6 24 24 H 1.08995 * 109.47342 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46632 * 300.00031 * 1 2 3 26 26 H 1.08994 * 109.47518 * 59.99615 * 1 2 3 27 27 H 1.09001 * 109.46704 * 240.00452 * 2 1 3 28 28 H 1.08994 * 109.47518 * 120.00384 * 2 1 3 29 29 H 1.09005 * 109.46967 * 299.92074 * 4 3 2 30 30 H 1.08998 * 109.46943 * 59.92024 * 4 3 2 31 31 H 1.08998 * 109.47352 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.45820 * 61.29180 * 5 3 2 33 33 H 1.09003 * 109.45295 * 301.33399 * 5 3 2 34 34 H 1.08999 * 109.50017 * 178.67783 * 6 5 3 35 35 H 1.09004 * 109.49998 * 58.58381 * 6 5 3 36 36 H 1.08998 * 109.58545 * 174.42116 * 7 6 5 37 37 H 1.08999 * 109.58713 * 294.84595 * 7 6 5 38 38 H 1.08996 * 109.47093 * 300.00420 * 11 9 8 39 39 H 1.09003 * 109.47280 * 60.00303 * 11 9 8 40 40 H 1.09003 * 109.47159 * 300.00594 * 12 11 9 41 41 H 1.08998 * 109.47141 * 59.99809 * 12 11 9 42 42 H 1.09010 * 109.46776 * 300.00406 * 13 12 11 43 43 H 1.08998 * 109.47244 * 59.99594 * 13 12 11 44 44 H 1.08997 * 109.46858 * 299.99478 * 14 13 12 45 45 H 1.09003 * 109.46947 * 59.99605 * 14 13 12 46 46 H 0.97004 * 119.99311 * 180.02562 * 18 17 15 47 47 H 1.08998 * 109.58617 * 173.39731 * 23 8 7 48 48 H 1.08995 * 109.59240 * 293.82509 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5289 2.1656 -1.2478 5 6 1.5336 2.1634 1.2514 6 6 2.0159 3.6157 1.2360 7 6 3.5476 3.6410 1.2499 8 7 4.0441 2.8284 0.1311 9 6 4.9167 3.3435 -0.7576 10 8 5.3195 2.6623 -1.6766 11 6 5.3917 4.7659 -0.6094 12 6 6.3687 5.0977 -1.7391 13 6 6.8516 6.5416 -1.5883 14 6 7.8281 6.8735 -2.7184 15 6 8.3032 8.2960 -2.5702 16 1 7.9441 8.9028 -1.7521 17 6 9.1962 8.8229 -3.4791 18 7 9.6330 8.0841 -4.4756 19 14 9.7856 10.5858 -3.2950 20 1 11.0084 10.6135 -2.4528 21 1 10.0943 11.1470 -4.6347 22 1 8.7225 11.3984 -2.6509 23 6 3.5719 1.4433 -0.0001 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8922 1.6535 -2.1389 30 1 0.4389 2.1648 -1.2473 31 1 1.8923 3.1932 -1.2467 32 1 1.9183 1.6624 2.1397 33 1 0.4439 2.1428 1.2663 34 1 1.6354 4.1348 2.1157 35 1 1.6520 4.1104 0.3354 36 1 3.8971 4.6675 1.1392 37 1 3.9113 3.2284 2.1909 38 1 4.5374 5.4412 -0.6574 39 1 5.8940 4.8831 0.3508 40 1 7.2230 4.4224 -1.6907 41 1 5.8670 4.9804 -2.6996 42 1 5.9974 7.2172 -1.6365 43 1 7.3534 6.6585 -0.6279 44 1 8.6822 6.1981 -2.6706 45 1 7.3258 6.7568 -3.6787 46 1 10.2615 8.4546 -5.1148 47 1 3.9374 1.0197 -0.9355 48 1 3.9376 0.8514 0.8389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588624536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:41 Heat of formation + Delta-G solvation = -97.472616 kcal Electronic energy + Delta-G solvation = -22582.820257 eV Core-core repulsion = 19442.185323 eV Total energy + Delta-G solvation = -3140.634934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.54569 -39.43129 -36.64738 -36.02518 -34.61038 -32.93090 -31.81349 -30.69228 -28.43043 -27.44371 -26.34766 -24.83594 -23.67256 -22.86957 -21.75123 -20.04739 -19.22264 -18.44182 -17.98626 -16.99564 -16.83675 -16.45445 -16.11159 -15.93223 -15.40421 -15.10009 -14.77936 -14.62590 -14.49682 -14.18111 -13.77249 -13.62885 -13.55767 -13.27616 -12.99224 -12.91099 -12.81604 -12.63134 -12.38271 -12.27261 -12.20508 -12.14389 -12.11440 -11.65651 -11.57899 -11.39278 -11.35535 -11.26462 -11.12060 -11.08632 -10.65596 -10.55276 -9.56919 -8.18763 -6.31107 1.40260 1.42844 1.53906 1.63506 2.03186 2.42017 3.13874 3.52938 3.75637 3.78591 3.84535 4.01305 4.09903 4.12256 4.24209 4.32539 4.37389 4.54825 4.58215 4.62390 4.65248 4.72490 4.75053 4.77073 4.81928 4.83474 4.85745 4.95760 5.02324 5.07196 5.13150 5.17093 5.18543 5.20556 5.27312 5.31971 5.35618 5.37527 5.53699 5.55770 5.57529 5.64650 5.77230 5.87520 6.24912 6.41601 6.87319 7.20528 7.38510 8.93640 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.039983 B = 0.002645 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.132772 B =10584.251496 C =10860.221136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.069 4.069 4 C -0.138 4.138 5 C -0.106 4.106 6 C -0.136 4.136 7 C 0.097 3.903 8 N -0.608 5.608 9 C 0.509 3.491 10 O -0.592 6.592 11 C -0.126 4.126 12 C -0.095 4.095 13 C -0.094 4.094 14 C 0.019 3.981 15 C -0.541 4.541 16 H 0.067 0.933 17 C -0.008 4.008 18 N -0.939 5.939 19 Si 0.971 3.029 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.258 1.258 23 C 0.116 3.884 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.061 0.939 43 H 0.062 0.938 44 H -0.016 1.016 45 H -0.017 1.017 46 H 0.263 0.737 47 H 0.060 0.940 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.868 -13.506 17.577 31.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.069 4.069 4 C -0.196 4.196 5 C -0.143 4.143 6 C -0.174 4.174 7 C -0.025 4.025 8 N -0.340 5.340 9 C 0.299 3.701 10 O -0.472 6.472 11 C -0.166 4.166 12 C -0.133 4.133 13 C -0.131 4.131 14 C -0.019 4.019 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.795 3.205 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.182 1.182 23 C -0.006 4.006 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.002 0.998 45 H 0.002 0.998 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.559 -13.858 16.970 30.738 hybrid contribution 0.855 0.506 -0.848 1.306 sum -20.705 -13.351 16.122 29.443 Atomic orbital electron populations 1.21846 0.94693 1.01985 1.02328 1.21489 0.96936 0.94312 1.02101 1.20884 0.93072 0.96514 0.96478 1.21891 1.01425 0.99747 0.96493 1.21632 1.01543 0.94870 0.96301 1.21996 0.94239 0.97649 1.03537 1.22089 0.95277 0.96452 0.88640 1.48194 1.43936 1.13897 1.27975 1.21213 0.78097 0.90046 0.80786 1.90670 1.58769 1.63176 1.34609 1.21686 1.01115 0.92218 1.01535 1.21240 0.97904 0.96518 0.97627 1.21437 0.98500 0.94452 0.98756 1.19058 0.93722 0.95231 0.93849 1.21748 1.25821 0.98840 1.11441 0.91486 1.26121 0.96602 1.02997 0.94827 1.70145 1.33185 1.38822 1.15777 0.85360 0.78937 0.78726 0.77487 1.19667 1.20963 1.18234 1.21700 0.94437 0.82411 1.02064 0.92363 0.91399 0.92901 0.92955 0.90858 0.94841 0.90985 0.93643 0.90703 0.90160 0.88320 0.92018 0.88342 0.89554 0.86703 0.86512 0.94016 0.94131 0.92059 0.91964 0.99792 0.99815 0.92861 0.92184 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.21 71.98 0.66 -0.85 16 2 C -0.11 -1.37 4.99 30.59 0.15 -1.21 16 3 C -0.07 -1.00 0.55 -52.10 -0.03 -1.03 16 4 C -0.14 -2.50 7.64 71.99 0.55 -1.95 16 5 C -0.11 -1.06 4.40 30.62 0.13 -0.93 16 6 C -0.14 -1.39 5.74 30.67 0.18 -1.21 16 7 C 0.10 1.25 6.34 86.37 0.55 1.80 16 8 N -0.61 -12.86 2.41 -818.91 -1.97 -14.84 16 9 C 0.51 15.04 7.70 87.66 0.67 15.72 16 10 O -0.59 -23.58 15.39 -3.02 -0.05 -23.62 16 11 C -0.13 -3.35 4.05 29.85 0.12 -3.23 16 12 C -0.09 -3.58 4.50 30.59 0.14 -3.44 16 13 C -0.09 -3.93 5.15 30.59 0.16 -3.77 16 14 C 0.02 1.04 4.97 29.85 0.15 1.19 16 15 C -0.54 -31.70 9.11 25.60 0.23 -31.46 16 16 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 17 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 18 N -0.94 -59.81 13.29 21.45 0.28 -59.52 16 19 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 C 0.12 2.33 5.11 86.36 0.44 2.77 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.07 0.54 6.41 -2.38 -0.02 0.53 16 26 H 0.05 0.59 6.43 -2.39 -0.02 0.57 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 29 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 1.06 6.43 -2.39 -0.02 1.04 16 31 H 0.04 0.94 5.97 -2.39 -0.01 0.92 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.66 6.36 -2.39 -0.02 0.65 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.79 6.33 -2.39 -0.02 0.78 16 36 H 0.10 1.11 5.93 -2.39 -0.01 1.10 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.11 2.48 7.69 -2.39 -0.02 2.46 16 39 H 0.12 2.49 7.94 -2.39 -0.02 2.47 16 40 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 41 H 0.04 1.68 8.10 -2.39 -0.02 1.67 16 42 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 44 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 45 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 46 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 47 H 0.06 1.60 7.00 -2.39 -0.02 1.58 16 48 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -75.77 363.33 5.76 -70.01 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.90 Total: 8.45 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 4.57 Total: -27.66 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -1.69 Total: -74.36 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -75.77 5.76 -70.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588624536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.463 kcal (2) G-P(sol) polarization free energy of solvation -75.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds