Wall clock time and date at job start Tue Mar 31 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47191 * 2 1 4 4 C 1.53000 * 109.52392 * 59.91784 * 3 2 1 5 5 C 1.53109 * 109.49235 * 299.85509 * 3 2 1 6 6 C 1.53036 * 109.50477 * 178.70090 * 5 3 2 7 7 C 1.53187 * 109.33909 * 61.34678 * 6 5 3 8 8 N 1.46931 * 108.77858 * 305.34763 * 7 6 5 9 9 C 1.34772 * 120.63173 * 233.63340 * 8 7 6 10 10 O 1.21277 * 119.99811 * 179.97438 * 9 8 7 11 11 C 1.50704 * 120.00006 * 359.97438 * 9 8 7 12 12 C 1.52997 * 109.46920 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47163 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47378 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.47306 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99759 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00017 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00079 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99808 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47118 * 89.99737 * 19 17 15 21 21 H 1.48500 * 109.46559 * 209.99912 * 19 17 15 22 22 H 1.48504 * 109.46794 * 329.99587 * 19 17 15 23 23 C 1.46925 * 118.73466 * 53.60925 * 8 7 6 24 24 H 1.08993 * 109.47058 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46993 * 300.00698 * 1 2 3 26 26 H 1.09007 * 109.47099 * 59.99730 * 1 2 3 27 27 H 1.08995 * 109.46719 * 239.99778 * 2 1 3 28 28 H 1.08997 * 109.46544 * 120.00392 * 2 1 3 29 29 H 1.09003 * 109.47112 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.47475 * 300.08260 * 4 3 2 31 31 H 1.09001 * 109.47364 * 60.08271 * 4 3 2 32 32 H 1.08997 * 109.50059 * 58.67028 * 5 3 2 33 33 H 1.09003 * 109.44365 * 298.69704 * 5 3 2 34 34 H 1.09002 * 109.49886 * 301.37799 * 6 5 3 35 35 H 1.09000 * 109.49395 * 181.31276 * 6 5 3 36 36 H 1.09004 * 109.58908 * 65.13475 * 7 6 5 37 37 H 1.09003 * 109.58748 * 185.41538 * 7 6 5 38 38 H 1.09001 * 109.47103 * 299.99900 * 11 9 8 39 39 H 1.08999 * 109.47147 * 60.00424 * 11 9 8 40 40 H 1.08992 * 109.47811 * 300.00447 * 12 11 9 41 41 H 1.09009 * 109.47273 * 60.00437 * 12 11 9 42 42 H 1.09004 * 109.47265 * 300.00571 * 13 12 11 43 43 H 1.09007 * 109.47122 * 60.00169 * 13 12 11 44 44 H 1.09001 * 109.46708 * 299.99794 * 14 13 12 45 45 H 1.08993 * 109.47478 * 59.99835 * 14 13 12 46 46 H 0.96992 * 120.00128 * 180.02562 * 18 17 15 47 47 H 1.08995 * 109.58986 * 66.17814 * 23 8 7 48 48 H 1.09003 * 109.58612 * 186.60908 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5291 2.1655 1.2478 5 6 1.5330 2.1636 -1.2518 6 6 2.0160 3.6157 -1.2359 7 6 3.5476 3.6410 -1.2499 8 7 4.0443 2.8282 -0.1311 9 6 4.9162 3.3436 0.7581 10 8 5.3183 2.6626 1.6775 11 6 5.3912 4.7661 0.6099 12 6 6.3665 5.0984 1.7409 13 6 6.8493 6.5423 1.5902 14 6 7.8250 6.8746 2.7209 15 6 8.3002 8.2971 2.5727 16 1 7.9423 8.9034 1.7537 17 6 9.1925 8.8241 3.4821 18 7 9.6286 8.0856 4.4791 19 14 9.7819 10.5871 3.2980 20 1 8.8709 11.4939 4.0416 21 1 11.1569 10.7089 3.8455 22 1 9.7866 10.9599 1.8605 23 6 3.5720 1.4431 0.0000 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.8925 3.1931 1.2467 30 1 0.4391 2.1648 1.2474 31 1 1.8924 1.6535 2.1388 32 1 0.4433 2.1435 -1.2670 33 1 1.9176 1.6626 -2.1401 34 1 1.6522 4.1103 -0.3353 35 1 1.6356 4.1352 -2.1153 36 1 3.9114 3.2284 -2.1910 37 1 3.8972 4.6677 -1.1418 38 1 5.8941 4.8830 -0.3501 39 1 4.5369 5.4413 0.6572 40 1 5.8633 4.9815 2.7007 41 1 7.2210 4.4232 1.6941 42 1 7.3527 6.6588 0.6304 43 1 5.9951 7.2179 1.6368 44 1 7.3219 6.7580 3.6808 45 1 8.6792 6.1991 2.6740 46 1 10.2561 8.4565 5.1191 47 1 3.9376 0.8514 -0.8391 48 1 3.9375 1.0195 0.9355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588624550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:44 Heat of formation + Delta-G solvation = -79.237420 kcal Electronic energy + Delta-G solvation = -22582.020804 eV Core-core repulsion = 19442.176607 eV Total energy + Delta-G solvation = -3139.844197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.65517 -38.46646 -35.21351 -34.88278 -32.60305 -32.23405 -30.60400 -29.49968 -27.47905 -26.13838 -25.27074 -23.84345 -22.46394 -21.85622 -19.99210 -19.10157 -18.52353 -16.99663 -16.17341 -15.91726 -15.78235 -15.31594 -15.14857 -14.51986 -14.42374 -14.22186 -14.00222 -13.57393 -13.19808 -13.08834 -12.59011 -12.42625 -12.29540 -12.13467 -11.91975 -11.80784 -11.63371 -11.56783 -11.39677 -11.09085 -10.96973 -10.92137 -10.64174 -10.51526 -10.49233 -10.47729 -10.35662 -9.67031 -9.57996 -9.18667 -8.95257 -8.67453 -8.28373 -5.93089 -3.95550 2.75687 2.94819 3.35350 3.41247 3.44506 4.27017 4.36361 4.47304 4.50503 4.65994 4.73397 4.83922 4.93021 4.99677 5.15724 5.18657 5.25623 5.33681 5.36884 5.40945 5.42456 5.49376 5.51061 5.57108 5.59111 5.63676 5.69801 5.76246 5.81773 5.84793 5.88828 5.95007 6.09300 6.17461 6.21004 6.32906 6.44868 6.59600 6.87673 7.05314 7.22959 7.39048 7.76654 7.93053 8.08627 8.29017 8.50334 9.12221 9.67923 11.18284 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.039970 B = 0.002645 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.351485 B =10583.405620 C =10859.288949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.075 4.075 4 C -0.141 4.141 5 C -0.109 4.109 6 C -0.140 4.140 7 C 0.106 3.894 8 N -0.617 5.617 9 C 0.515 3.485 10 O -0.536 6.536 11 C -0.138 4.138 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.519 4.519 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.121 3.879 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.062 0.938 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.110 -14.798 -14.406 28.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.076 4.076 4 C -0.198 4.198 5 C -0.147 4.147 6 C -0.178 4.178 7 C -0.017 4.017 8 N -0.352 5.352 9 C 0.304 3.696 10 O -0.412 6.412 11 C -0.177 4.177 12 C -0.141 4.141 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.002 4.002 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.748 -15.151 -13.748 28.435 hybrid contribution 0.311 0.985 -0.145 1.043 sum -19.437 -14.167 -13.893 27.776 Atomic orbital electron populations 1.21868 0.95703 1.01468 1.02106 1.21501 0.96135 0.95218 1.02146 1.20936 0.94951 0.95584 0.96119 1.21911 1.00551 1.00768 0.96585 1.21640 1.00793 0.95130 0.97113 1.21996 0.95431 0.97426 1.02910 1.21737 0.94202 0.96392 0.89356 1.48138 1.45505 1.13311 1.28217 1.21079 0.77713 0.89956 0.80845 1.90686 1.56446 1.61938 1.32119 1.21814 1.01275 0.92105 1.02539 1.21455 0.97668 0.98490 0.96497 1.21645 0.99488 0.92826 1.00769 1.19097 0.93646 0.96124 0.92879 1.21286 1.25605 0.97935 1.10948 0.92771 1.25047 0.96478 0.97674 0.95420 1.69975 1.32599 1.36237 1.14678 0.86612 0.78014 0.85238 0.78222 1.20717 1.21265 1.19930 1.21600 0.92699 0.82858 1.03059 0.92936 0.92343 0.92489 0.91926 0.91703 0.92277 0.92485 0.92673 0.91361 0.91913 0.90939 0.90767 0.91520 0.89254 0.89271 0.89297 0.91862 0.91847 0.93518 0.93535 0.96611 0.96590 0.93058 0.91980 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.21 37.16 0.34 -0.58 16 2 C -0.11 -0.76 4.99 -26.73 -0.13 -0.90 16 3 C -0.08 -0.60 0.55 -154.35 -0.08 -0.68 16 4 C -0.14 -1.29 7.63 37.16 0.28 -1.00 16 5 C -0.11 -0.72 4.40 -26.66 -0.12 -0.84 16 6 C -0.14 -0.95 5.74 -26.62 -0.15 -1.10 16 7 C 0.11 0.85 6.34 -3.71 -0.02 0.83 16 8 N -0.62 -6.87 2.41 -172.77 -0.42 -7.29 16 9 C 0.51 7.58 7.70 -10.99 -0.08 7.50 16 10 O -0.54 -10.09 15.39 5.56 0.09 -10.01 16 11 C -0.14 -1.92 4.05 -27.88 -0.11 -2.03 16 12 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 13 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 19 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 23 C 0.12 1.23 5.11 -3.71 -0.02 1.21 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 26 H 0.06 0.31 6.41 -51.93 -0.33 -0.02 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.62 5.97 -51.93 -0.31 0.31 16 30 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.41 6.37 -51.93 -0.33 0.08 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.56 6.33 -51.93 -0.33 0.23 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.68 5.95 -51.93 -0.31 0.37 16 38 H 0.09 1.09 7.94 -51.93 -0.41 0.67 16 39 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 40 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.06 1.25 8.10 -51.92 -0.42 0.83 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.09 1.14 7.01 -51.93 -0.36 0.77 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -33.25 363.35 -8.96 -42.21 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -8.91 Total: -4.79 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.91 Total: -15.59 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.32 Total: -34.35 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.25 -8.96 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588624550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.029 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds