Wall clock time and date at job start Tue Mar 31 2020 05:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 119.99610 * 2 1 4 4 O 1.21283 * 120.00122 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.00401 * 359.97438 * 3 2 1 6 6 C 1.53004 * 109.47535 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47000 * 180.02562 * 6 5 3 8 8 C 1.53004 * 109.47000 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47211 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99761 * 359.97438 * 9 8 7 11 11 C 1.37871 * 119.99694 * 180.27574 * 9 8 7 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 8 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 8 14 14 H 1.48504 * 109.47209 * 89.99886 * 13 11 9 15 15 H 1.48501 * 109.47358 * 209.99377 * 13 11 9 16 16 H 1.48496 * 109.47341 * 329.99989 * 13 11 9 17 17 C 1.46499 * 120.00325 * 179.97438 * 2 1 3 18 18 H 1.09004 * 110.43349 * 179.30534 * 17 2 1 19 19 C 1.54885 * 110.48662 * 56.75912 * 17 2 1 20 20 C 1.54888 * 102.74698 * 203.37946 * 19 17 2 21 21 C 1.54261 * 104.19773 * 37.94659 * 20 19 17 22 22 C 1.52995 * 110.03675 * 95.67274 * 21 20 19 23 23 C 1.53007 * 110.03278 * 217.10325 * 21 20 19 24 24 C 1.54090 * 106.61960 * 336.27666 * 21 20 19 25 25 H 1.09001 * 109.47020 * 90.00308 * 1 2 3 26 26 H 1.08999 * 109.47360 * 209.99830 * 1 2 3 27 27 H 1.08997 * 109.47682 * 330.00412 * 1 2 3 28 28 H 1.09000 * 109.47335 * 60.00042 * 5 3 2 29 29 H 1.08998 * 109.46954 * 300.00487 * 5 3 2 30 30 H 1.08995 * 109.46638 * 60.00000 * 6 5 3 31 31 H 1.08998 * 109.46846 * 300.00453 * 6 5 3 32 32 H 1.09000 * 109.47849 * 59.99917 * 7 6 5 33 33 H 1.09007 * 109.47288 * 299.99511 * 7 6 5 34 34 H 1.09000 * 109.47211 * 59.99130 * 8 7 6 35 35 H 1.09007 * 109.46376 * 299.99672 * 8 7 6 36 36 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 37 37 H 1.08997 * 110.75455 * 321.69605 * 19 17 2 38 38 H 1.09001 * 110.75686 * 85.06709 * 19 17 2 39 39 H 1.09003 * 110.48463 * 156.62296 * 20 19 17 40 40 H 1.08996 * 110.48905 * 279.26181 * 20 19 17 41 41 H 1.08997 * 109.47205 * 61.45331 * 22 21 20 42 42 H 1.08998 * 109.47477 * 181.45414 * 22 21 20 43 43 H 1.09006 * 109.47161 * 301.45294 * 22 21 20 44 44 H 1.09001 * 109.46473 * 58.54438 * 23 21 20 45 45 H 1.08995 * 109.47234 * 178.54080 * 23 21 20 46 46 H 1.08996 * 109.46808 * 298.54869 * 23 21 20 47 47 H 1.09001 * 110.15831 * 240.88136 * 24 21 20 48 48 H 1.09000 * 110.00545 * 119.38449 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1674 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3795 3.6353 -0.0011 7 6 1.6144 4.9603 -0.0011 8 6 2.6086 6.1233 -0.0022 9 6 1.8550 7.4283 -0.0015 10 1 0.7750 7.4282 -0.0008 11 6 2.5443 8.6223 -0.0081 12 7 3.8595 8.6225 -0.0093 13 14 1.6102 10.2400 -0.0152 14 1 1.3641 10.6756 1.3831 15 1 2.4120 11.2716 -0.7210 16 1 0.3120 10.0590 -0.7130 17 6 2.1975 -1.2687 0.0006 18 1 3.2723 -1.0875 -0.0119 19 6 1.7798 -2.1364 -1.2125 20 6 2.1334 -3.5701 -0.7451 21 6 1.7638 -3.5817 0.7525 22 6 0.3578 -4.1547 0.9410 23 6 2.7795 -4.4153 1.5366 24 6 1.8072 -2.1169 1.2286 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 0.7583 2.5303 0.8891 29 1 0.7589 2.5298 -0.8908 30 1 3.0061 3.5772 -0.8910 31 1 3.0062 3.5780 0.8889 32 1 0.9879 5.0182 0.8891 33 1 0.9874 5.0179 -0.8909 34 1 3.2347 6.0652 -0.8926 35 1 3.2358 6.0658 0.8875 36 1 4.3444 9.4625 -0.0143 37 1 0.7106 -2.0448 -1.4030 38 1 2.3556 -1.8656 -2.0976 39 1 1.5416 -4.3057 -1.2898 40 1 3.1981 -3.7626 -0.8768 41 1 0.3330 -5.1828 0.5799 42 1 0.0960 -4.1348 1.9989 43 1 -0.3576 -3.5547 0.3784 44 1 3.7771 -3.9994 1.3952 45 1 2.5246 -4.3960 2.5961 46 1 2.7603 -5.4439 1.1767 47 1 2.5523 -1.9996 2.0155 48 1 0.8261 -1.8145 1.5947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588728157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:02 Heat of formation + Delta-G solvation = -79.477074 kcal Electronic energy + Delta-G solvation = -22197.268025 eV Core-core repulsion = 19057.413436 eV Total energy + Delta-G solvation = -3139.854589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.43272 -38.76551 -35.42134 -34.85381 -32.66403 -31.75810 -29.78247 -28.69761 -27.69522 -26.99181 -25.74569 -24.38987 -22.45155 -20.70013 -19.96715 -19.16175 -18.89166 -17.13253 -16.26669 -16.11687 -15.85415 -15.34030 -14.67221 -14.40689 -14.33682 -14.09841 -13.68816 -13.55740 -13.19599 -13.06177 -12.71215 -12.47090 -12.41652 -12.19662 -12.02998 -11.84451 -11.61094 -11.57988 -11.50722 -11.09990 -10.95837 -10.87358 -10.79019 -10.70258 -10.49921 -10.47324 -10.36574 -9.69360 -9.57731 -9.18428 -8.95097 -8.70277 -8.28253 -5.92978 -3.95443 2.73813 2.92429 3.35420 3.41349 3.44614 4.19034 4.24907 4.42736 4.50575 4.68431 4.85921 4.92644 4.97026 5.03348 5.13208 5.17614 5.19414 5.23544 5.30649 5.36178 5.41919 5.43336 5.43948 5.45185 5.55741 5.61502 5.62928 5.68963 5.77793 5.88875 5.90068 5.98331 6.04689 6.08476 6.17981 6.33285 6.49019 6.60264 6.87937 7.05471 7.22959 7.36051 7.76765 7.93186 8.08732 8.27452 8.50484 9.12332 9.68035 11.18375 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.047423 B = 0.002408 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.286910 B =11626.183546 C =11831.019441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.617 5.617 3 C 0.513 3.487 4 O -0.536 6.536 5 C -0.137 4.137 6 C -0.104 4.104 7 C -0.110 4.110 8 C 0.020 3.980 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.135 3.865 18 H 0.104 0.896 19 C -0.133 4.133 20 C -0.113 4.113 21 C -0.069 4.069 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.128 4.128 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.505 -28.546 0.693 29.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.351 5.351 3 C 0.303 3.697 4 O -0.412 6.412 5 C -0.177 4.177 6 C -0.142 4.142 7 C -0.147 4.147 8 C -0.018 4.018 9 C -0.558 4.558 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C 0.031 3.969 18 H 0.122 0.878 19 C -0.171 4.171 20 C -0.151 4.151 21 C -0.069 4.069 22 C -0.194 4.194 23 C -0.197 4.197 24 C -0.166 4.166 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.701 -28.406 0.696 29.440 hybrid contribution -0.594 0.906 0.015 1.083 sum -8.295 -27.500 0.711 28.732 Atomic orbital electron populations 1.21767 0.79874 1.03252 1.01864 1.47943 1.06777 1.05746 1.74653 1.21132 0.88250 0.85511 0.74836 1.90685 1.14229 1.87296 1.48975 1.21821 1.00057 0.92064 1.03713 1.21460 0.97046 0.92744 1.02906 1.21645 0.99054 0.94023 1.00006 1.19100 0.94072 0.91274 0.97306 1.21284 0.92970 0.91207 1.50317 0.92768 1.25046 0.94843 0.99226 0.95505 1.69974 1.06047 1.26482 1.50982 0.86611 0.79818 0.83620 0.78029 1.20717 1.21268 1.19935 1.21924 0.98220 0.82449 0.94301 0.87781 1.22820 1.01666 0.94718 0.97916 1.22438 1.01516 0.96545 0.94642 1.21171 0.95732 0.94705 0.95314 1.21900 0.95489 1.00523 1.01535 1.21927 0.98629 0.99452 0.99738 1.22710 1.02394 0.93593 0.97913 0.92621 0.91091 0.90571 0.89229 0.89237 0.91850 0.91863 0.93522 0.93518 0.96590 0.96609 0.93057 0.91059 0.91220 0.91350 0.91227 0.92687 0.92694 0.92629 0.92411 0.92687 0.92715 0.91197 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 8.93 59.84 0.53 1.11 16 2 N -0.62 -6.89 2.86 -172.04 -0.49 -7.38 16 3 C 0.51 7.61 7.67 -10.99 -0.08 7.53 16 4 O -0.54 -10.16 15.34 5.55 0.09 -10.07 16 5 C -0.14 -1.91 4.25 -27.88 -0.12 -2.03 16 6 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 7 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 8 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 9 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 10 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 11 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 13 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.13 1.38 3.26 -66.27 -0.22 1.17 16 18 H 0.10 1.34 6.98 -51.93 -0.36 0.98 16 19 C -0.13 -1.10 6.44 -24.74 -0.16 -1.26 16 20 C -0.11 -0.78 5.90 -25.08 -0.15 -0.93 16 21 C -0.07 -0.47 0.94 -153.28 -0.14 -0.61 16 22 C -0.14 -0.79 8.15 37.15 0.30 -0.49 16 23 C -0.14 -0.90 8.15 37.16 0.30 -0.60 16 24 C -0.13 -1.07 5.67 -25.50 -0.14 -1.21 16 25 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 26 H 0.07 0.43 6.36 -51.93 -0.33 0.10 16 27 H 0.08 0.54 6.44 -51.93 -0.33 0.21 16 28 H 0.09 1.09 7.40 -51.93 -0.38 0.70 16 29 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.07 0.54 7.17 -51.93 -0.37 0.16 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.41 7.84 -51.93 -0.41 0.01 16 40 H 0.07 0.49 7.85 -51.93 -0.41 0.08 16 41 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.64 7.68 -51.93 -0.40 0.24 16 48 H 0.07 0.57 5.75 -51.93 -0.30 0.27 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -33.43 372.40 -8.93 -42.36 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -9.17 Total: -5.16 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -0.68 Total: -15.35 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.24 Total: -34.45 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.43 -8.93 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588728157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.120 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds