Wall clock time and date at job start Tue Mar 31 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34779 * 120.00050 * 2 1 4 4 O 1.21273 * 120.00093 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99767 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.46735 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47060 * 180.02562 * 6 5 3 8 8 C 1.52992 * 109.47482 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47592 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00356 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00113 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99923 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47375 * 89.99678 * 13 11 9 15 15 H 1.48508 * 109.47196 * 209.99673 * 13 11 9 16 16 H 1.48504 * 109.47051 * 329.99297 * 13 11 9 17 17 C 1.46496 * 119.99896 * 180.02562 * 2 1 3 18 18 H 1.09002 * 110.43627 * 182.54401 * 17 2 1 19 19 C 1.54893 * 110.48445 * 305.22046 * 17 2 1 20 20 C 1.54895 * 102.74745 * 156.62149 * 19 17 2 21 21 C 1.54267 * 104.19577 * 322.06091 * 20 19 17 22 22 C 1.52999 * 110.03495 * 264.32220 * 21 20 19 23 23 C 1.53005 * 110.03439 * 142.89268 * 21 20 19 24 24 C 1.53883 * 106.60073 * 23.60966 * 21 20 19 25 25 H 1.09003 * 109.46862 * 90.00175 * 1 2 3 26 26 H 1.08996 * 109.47101 * 210.00301 * 1 2 3 27 27 H 1.09003 * 109.46885 * 329.99908 * 1 2 3 28 28 H 1.09001 * 109.46797 * 60.00350 * 5 3 2 29 29 H 1.08992 * 109.47518 * 300.00347 * 5 3 2 30 30 H 1.09002 * 109.47398 * 300.00410 * 6 5 3 31 31 H 1.09001 * 109.47194 * 60.00591 * 6 5 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 33 33 H 1.08998 * 109.47533 * 59.99948 * 7 6 5 34 34 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 35 35 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 36 36 H 0.97008 * 120.00167 * 179.97438 * 12 11 9 37 37 H 1.08999 * 110.75927 * 274.93319 * 19 17 2 38 38 H 1.08999 * 110.75142 * 38.31247 * 19 17 2 39 39 H 1.08993 * 110.48949 * 203.37917 * 20 19 17 40 40 H 1.09002 * 110.59730 * 80.79316 * 20 19 17 41 41 H 1.08995 * 109.47162 * 177.16544 * 22 21 20 42 42 H 1.08994 * 109.46828 * 297.17338 * 22 21 20 43 43 H 1.09002 * 109.46410 * 57.16519 * 22 21 20 44 44 H 1.09005 * 109.46586 * 302.83563 * 23 21 20 45 45 H 1.08994 * 109.46844 * 62.82833 * 23 21 20 46 46 H 1.08994 * 109.47280 * 182.83431 * 23 21 20 47 47 H 1.09000 * 110.02967 * 240.71679 * 24 21 20 48 48 H 1.08994 * 110.07614 * 119.30492 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6352 -0.0011 7 6 1.6147 4.9603 -0.0011 8 6 2.6089 6.1231 -0.0022 9 6 1.8554 7.4283 -0.0028 10 1 0.7754 7.4283 -0.0020 11 6 2.5448 8.6223 -0.0033 12 7 1.8872 9.7612 -0.0044 13 14 4.4128 8.6223 -0.0041 14 1 4.9073 8.6219 -1.4043 15 1 4.9081 9.8351 0.6955 16 1 4.9080 7.4100 0.6962 17 6 2.1975 -1.2687 -0.0006 18 1 3.2715 -1.0881 0.0449 19 6 1.7438 -2.1571 1.1844 20 6 2.1115 -3.5827 0.7031 21 6 1.7870 -3.5683 -0.8050 22 6 0.3873 -4.1375 -1.0454 23 6 2.8259 -4.3885 -1.5725 24 6 1.8417 -2.0970 -1.2524 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 0.7584 2.5302 0.8892 29 1 0.7590 2.5299 -0.8907 30 1 3.0064 3.5779 0.8889 31 1 3.0063 3.5771 -0.8911 32 1 0.9877 5.0178 -0.8908 33 1 0.9883 5.0182 0.8891 34 1 3.2362 6.0657 0.8873 35 1 3.2348 6.0651 -0.8927 36 1 2.3722 10.6014 -0.0044 37 1 2.2927 -1.9019 2.0909 38 1 0.6692 -2.0685 1.3442 39 1 1.5038 -4.3274 1.2170 40 1 3.1714 -3.7801 0.8634 41 1 0.1478 -4.0767 -2.1070 42 1 0.3589 -5.1791 -0.7255 43 1 -0.3417 -3.5622 -0.4748 44 1 3.8212 -3.9905 -1.3746 45 1 2.7793 -5.4282 -1.2487 46 1 2.6173 -4.3308 -2.6407 47 1 0.8711 -1.7885 -1.6408 48 1 2.6079 -1.9666 -2.0165 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588728159.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:04 Heat of formation + Delta-G solvation = -75.576346 kcal Electronic energy + Delta-G solvation = -22255.754805 eV Core-core repulsion = 19116.069365 eV Total energy + Delta-G solvation = -3139.685440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48567 -38.82225 -35.49380 -34.99102 -32.63380 -31.79911 -30.11016 -28.85376 -27.70986 -27.01427 -26.00944 -24.46775 -22.27600 -20.65537 -20.00935 -19.19018 -18.92845 -17.22896 -16.54088 -16.31138 -15.90580 -15.40775 -14.70859 -14.45588 -14.20504 -14.11252 -13.71337 -13.61026 -13.30225 -13.14799 -12.71100 -12.55625 -12.46718 -12.33217 -12.15893 -11.93362 -11.76668 -11.70819 -11.62905 -11.15430 -11.07341 -10.90666 -10.81560 -10.73661 -10.68449 -10.50676 -9.89048 -9.76919 -9.61964 -9.37372 -9.09591 -8.75134 -8.47552 -5.98806 -3.96090 2.67252 2.87240 3.36917 3.43769 3.50207 4.15086 4.21906 4.39899 4.51884 4.61668 4.84083 4.87277 4.93034 4.99011 5.06907 5.14343 5.15508 5.21645 5.26530 5.28847 5.35223 5.37698 5.40081 5.44584 5.52378 5.57361 5.61153 5.67000 5.74628 5.81716 5.87323 5.92634 6.01895 6.05507 6.06633 6.17810 6.39958 6.49372 6.71442 6.85078 7.01874 7.29765 7.40786 7.53541 7.86788 8.20790 8.60277 9.06218 9.64703 11.14679 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.041039 B = 0.002572 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.119538 B =10885.008328 C =11178.543348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.616 5.616 3 C 0.514 3.486 4 O -0.538 6.538 5 C -0.137 4.137 6 C -0.106 4.106 7 C -0.102 4.102 8 C -0.016 4.016 9 C -0.519 4.519 10 H 0.071 0.929 11 C 0.064 3.936 12 N -0.906 5.906 13 Si 0.880 3.120 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.264 1.264 17 C 0.135 3.865 18 H 0.104 0.896 19 C -0.135 4.135 20 C -0.113 4.113 21 C -0.069 4.069 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.126 4.126 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.015 0.985 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.036 -31.444 -0.520 31.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.350 5.350 3 C 0.303 3.697 4 O -0.414 6.414 5 C -0.177 4.177 6 C -0.144 4.144 7 C -0.140 4.140 8 C -0.053 4.053 9 C -0.557 4.557 10 H 0.089 0.911 11 C -0.137 4.137 12 N -0.546 5.546 13 Si 0.707 3.293 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.189 1.189 17 C 0.031 3.969 18 H 0.122 0.878 19 C -0.173 4.173 20 C -0.151 4.151 21 C -0.069 4.069 22 C -0.194 4.194 23 C -0.197 4.197 24 C -0.165 4.165 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.362 -31.231 -0.526 31.416 hybrid contribution 0.772 0.130 -0.070 0.786 sum -2.590 -31.101 -0.596 31.214 Atomic orbital electron populations 1.21795 0.79783 1.03373 1.01904 1.47936 1.06832 1.05733 1.74521 1.21110 0.88216 0.85533 0.74832 1.90676 1.14251 1.87330 1.49152 1.21804 0.99995 0.91936 1.03944 1.21491 0.97168 0.92940 1.02844 1.21469 0.98632 0.92980 1.00879 1.19577 0.95329 0.94089 0.96305 1.21186 0.95021 0.89021 1.50426 0.91117 1.25044 0.98410 0.95560 0.94641 1.69923 1.35711 0.97386 1.51546 0.86772 0.86347 0.77637 0.78534 1.20328 1.21471 1.18890 1.21928 0.98161 0.82423 0.94361 0.87794 1.22854 1.01657 0.94738 0.98058 1.22436 1.01598 0.96534 0.94556 1.21135 0.95762 0.94737 0.95289 1.21900 0.95517 1.00501 1.01504 1.21927 0.98441 0.99515 0.99861 1.22649 1.02452 0.93608 0.97789 0.92608 0.90989 0.90482 0.89052 0.89079 0.91850 0.91852 0.92902 0.92876 0.96629 0.97069 0.92839 0.91176 0.90863 0.91331 0.91228 0.92682 0.92709 0.92627 0.92441 0.92702 0.92674 0.91038 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 9.17 59.85 0.55 1.09 16 2 N -0.62 -6.57 2.86 -172.03 -0.49 -7.06 16 3 C 0.51 7.27 7.67 -10.98 -0.08 7.19 16 4 O -0.54 -9.76 15.35 5.56 0.09 -9.67 16 5 C -0.14 -1.82 4.25 -27.88 -0.12 -1.93 16 6 C -0.11 -1.84 4.50 -26.73 -0.12 -1.96 16 7 C -0.10 -2.04 5.15 -26.74 -0.14 -2.18 16 8 C -0.02 -0.39 4.04 -27.89 -0.11 -0.50 16 9 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 10 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 11 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 12 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 13 Si 0.88 22.58 27.47 -169.99 -4.67 17.91 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 17 C 0.13 1.33 3.27 -66.27 -0.22 1.11 16 18 H 0.10 1.28 6.98 -51.93 -0.36 0.92 16 19 C -0.13 -1.04 6.42 -24.73 -0.16 -1.20 16 20 C -0.11 -0.74 5.90 -25.07 -0.15 -0.89 16 21 C -0.07 -0.45 0.94 -153.38 -0.14 -0.59 16 22 C -0.14 -0.77 8.15 37.16 0.30 -0.47 16 23 C -0.14 -0.88 8.16 37.16 0.30 -0.57 16 24 C -0.13 -1.03 5.74 -25.61 -0.15 -1.18 16 25 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 26 H 0.07 0.41 6.03 -51.93 -0.31 0.10 16 27 H 0.08 0.52 6.44 -51.93 -0.33 0.18 16 28 H 0.09 1.05 7.40 -51.93 -0.38 0.66 16 29 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 30 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 35 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 36 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.51 6.06 -51.93 -0.31 0.19 16 39 H 0.07 0.39 7.84 -51.93 -0.41 -0.02 16 40 H 0.07 0.47 7.83 -51.93 -0.41 0.06 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 45 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.56 6.52 -51.93 -0.34 0.23 16 48 H 0.07 0.62 7.67 -51.93 -0.40 0.23 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -33.66 368.20 -8.51 -42.17 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -9.09 Total: -5.26 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -0.66 Total: -15.82 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.28 Total: -34.87 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.66 -8.51 -42.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588728159.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.409 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds