Wall clock time and date at job start Tue Mar 31 2020 05:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47220 * 2 1 4 4 C 1.53000 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47166 * 60.00354 * 4 3 2 6 6 C 1.53000 * 109.47166 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47059 * 59.99736 * 5 4 3 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 5 4 9 9 O 1.21283 * 120.00222 * 0.28168 * 8 7 5 10 10 C 1.50703 * 120.00290 * 180.27728 * 8 7 5 11 11 C 1.52990 * 109.47398 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47353 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47600 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47646 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99463 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00445 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99998 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00395 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99434 * 18 16 14 20 20 H 1.48495 * 109.47568 * 210.00065 * 18 16 14 21 21 H 1.48504 * 109.46680 * 329.99683 * 18 16 14 22 22 C 1.52997 * 109.46762 * 299.99926 * 5 4 3 23 23 C 1.52996 * 109.47166 * 240.00354 * 2 1 3 24 24 H 1.09003 * 109.47049 * 59.99901 * 1 2 3 25 25 H 1.08990 * 109.47258 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46739 * 299.99976 * 1 2 3 27 27 H 1.08994 * 109.47175 * 120.00335 * 2 1 3 28 28 H 1.09001 * 109.47245 * 60.00334 * 3 2 1 29 29 H 1.08999 * 109.47547 * 300.00670 * 3 2 1 30 30 H 1.09003 * 109.47049 * 300.00098 * 4 3 2 31 31 H 1.09004 * 109.47131 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.47559 * 299.99905 * 6 5 4 33 33 H 1.09003 * 109.47049 * 59.99744 * 6 5 4 34 34 H 1.09001 * 109.47192 * 179.97438 * 6 5 4 35 35 H 0.97001 * 120.00384 * 0.02562 * 7 5 4 36 36 H 1.08998 * 109.46954 * 300.00581 * 10 8 7 37 37 H 1.09002 * 109.46946 * 59.99717 * 10 8 7 38 38 H 1.08998 * 109.47508 * 300.00200 * 11 10 8 39 39 H 1.09011 * 109.47182 * 60.00188 * 11 10 8 40 40 H 1.08999 * 109.47616 * 300.00389 * 12 11 10 41 41 H 1.09003 * 109.47280 * 60.00024 * 12 11 10 42 42 H 1.08998 * 109.47382 * 300.00476 * 13 12 11 43 43 H 1.09005 * 109.46800 * 60.00677 * 13 12 11 44 44 H 0.96996 * 120.00393 * 180.02562 * 17 16 14 45 45 H 1.09001 * 109.47245 * 179.97438 * 22 5 4 46 46 H 1.08999 * 109.47547 * 299.99437 * 22 5 4 47 47 H 1.09004 * 109.47066 * 300.00004 * 23 2 1 48 48 H 1.09003 * 109.47345 * 59.99926 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7215 -1.2502 6 6 5.6095 0.7220 -1.2512 7 7 3.5906 1.4123 -2.4460 8 6 3.9203 0.9553 -3.6703 9 8 4.6175 -0.0307 -3.7821 10 6 3.4226 1.6696 -4.9005 11 6 3.9361 0.9515 -6.1500 12 6 3.4303 1.6762 -7.3989 13 6 3.9433 0.9578 -8.6485 14 6 3.4455 1.6720 -9.8786 15 1 2.8250 2.5503 -9.7791 16 6 3.7815 1.2036 -11.1311 17 7 4.5367 0.1338 -11.2523 18 14 3.1651 2.0894 -12.6559 19 1 4.1464 3.1303 -13.0543 20 1 3.0016 1.1135 -13.7631 21 1 1.8572 2.7285 -12.3622 22 6 3.5695 -0.7210 -1.2502 23 6 2.0400 -0.7212 -1.2493 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9337 0.9285 0.8891 31 1 3.9334 2.4702 -0.0002 32 1 5.9725 1.7498 -1.2514 33 1 5.9736 0.2083 -0.3614 34 1 5.9725 0.2080 -2.1412 35 1 3.0332 2.2012 -2.3567 36 1 2.3326 1.6701 -4.9043 37 1 3.7863 2.6971 -4.8962 38 1 5.0261 0.9506 -6.1465 39 1 3.5719 -0.0760 -6.1541 40 1 2.3403 1.6768 -7.4023 41 1 3.7940 2.7038 -7.3951 42 1 5.0332 0.9568 -8.6454 43 1 3.5790 -0.0696 -8.6521 44 1 4.7734 -0.1955 -12.1334 45 1 3.9320 -1.2346 -2.1407 46 1 3.9332 -1.2350 -0.3606 47 1 1.6767 -1.7489 -1.2493 48 1 1.6767 -0.2073 -2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588904349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:34 Heat of formation + Delta-G solvation = -91.694231 kcal Electronic energy + Delta-G solvation = -22628.726045 eV Core-core repulsion = 19488.341681 eV Total energy + Delta-G solvation = -3140.384364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71567 -38.32904 -35.10631 -34.59978 -32.68831 -31.85538 -31.09562 -29.48986 -28.76998 -25.64510 -24.52594 -23.07095 -22.60338 -20.88631 -20.39805 -19.91571 -19.18056 -17.03483 -16.21890 -15.99430 -15.54514 -14.94439 -14.54816 -14.42067 -14.39945 -14.08069 -13.79157 -13.73679 -13.19883 -12.62368 -12.54543 -12.50441 -12.37830 -12.06691 -11.92433 -11.79203 -11.63704 -11.52533 -11.45631 -11.16053 -10.95185 -10.80786 -10.49599 -10.48713 -10.42754 -10.37414 -10.31481 -9.57760 -9.47689 -9.14659 -8.99318 -8.93963 -8.28373 -5.93156 -3.95602 2.83253 3.20949 3.35371 3.41315 3.44593 4.32742 4.41885 4.47276 4.50752 4.73405 4.84522 4.93714 5.10100 5.14970 5.24288 5.29573 5.35839 5.37835 5.41616 5.43405 5.44847 5.52921 5.56076 5.64064 5.70323 5.75710 5.82695 5.87459 5.93542 5.96955 6.05757 6.18248 6.19253 6.24614 6.26398 6.35597 6.56919 6.63020 6.88426 7.06505 7.23665 7.59466 7.76664 7.93162 8.08631 8.40286 8.50521 9.12229 9.67951 11.18216 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029121 B = 0.002769 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.276478 B =10110.807419 C =10479.658638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.121 4.121 5 C 0.178 3.822 6 C -0.165 4.165 7 N -0.728 5.728 8 C 0.514 3.486 9 O -0.532 6.532 10 C -0.140 4.140 11 C -0.102 4.102 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.131 4.131 23 C -0.111 4.111 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.396 0.604 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.260 0.740 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 2.795 27.434 28.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.152 4.152 4 C -0.159 4.159 5 C 0.093 3.907 6 C -0.223 4.223 7 N -0.381 5.381 8 C 0.302 3.698 9 O -0.408 6.408 10 C -0.180 4.180 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.169 4.169 23 C -0.149 4.149 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.231 0.769 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.480 1.955 27.220 27.655 hybrid contribution -0.587 0.880 -0.811 1.333 sum -5.067 2.835 26.409 27.039 Atomic orbital electron populations 1.21831 0.95341 1.01710 1.01631 1.21149 0.95343 0.95900 0.98639 1.21599 0.94968 0.96746 1.01892 1.21835 0.96032 1.00754 0.97269 1.20246 0.93764 0.92391 0.84327 1.22225 0.94461 1.02097 1.03524 1.46237 1.54380 1.32121 1.05383 1.20981 0.79692 0.84593 0.84544 1.90633 1.37283 1.26160 1.86693 1.21801 1.02255 1.00734 0.93255 1.21423 1.01121 0.99411 0.92001 1.21648 0.99444 0.98852 0.94859 1.19092 0.96424 0.95602 0.90579 1.21291 1.31299 1.12061 0.91170 0.92781 1.25040 0.95317 0.95089 0.99133 1.69973 1.37064 1.23107 1.23361 0.86615 0.79188 0.79428 0.82882 1.20717 1.21261 1.19920 1.21949 0.95576 0.95910 1.03490 1.21530 0.95502 1.00153 0.97670 0.92648 0.92748 0.92900 0.91425 0.91860 0.91878 0.90564 0.91393 0.92832 0.92239 0.90036 0.76938 0.89425 0.89392 0.91871 0.91876 0.93562 0.93557 0.96624 0.96616 0.93057 0.89426 0.91729 0.92201 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.19 37.16 0.34 -0.67 16 2 C -0.09 -0.67 2.72 -90.62 -0.25 -0.91 16 3 C -0.11 -0.74 5.03 -26.73 -0.13 -0.87 16 4 C -0.12 -0.83 4.78 -26.73 -0.13 -0.96 16 5 C 0.18 1.67 0.66 -131.82 -0.09 1.58 16 6 C -0.17 -1.71 8.40 37.16 0.31 -1.39 16 7 N -0.73 -7.21 4.04 -47.61 -0.19 -7.40 16 8 C 0.51 6.95 7.25 -10.98 -0.08 6.87 16 9 O -0.53 -9.13 12.19 5.55 0.07 -9.06 16 10 C -0.14 -1.88 5.70 -27.89 -0.16 -2.04 16 11 C -0.10 -1.84 4.50 -26.74 -0.12 -1.96 16 12 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 22 C -0.13 -1.35 4.52 -26.76 -0.12 -1.47 16 23 C -0.11 -1.03 5.04 -26.76 -0.13 -1.16 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.09 6.16 -51.93 -0.32 0.77 16 35 H 0.40 3.00 7.32 -40.82 -0.30 2.70 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.06 1.22 8.10 -51.92 -0.42 0.80 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.09 1.18 6.18 -51.93 -0.32 0.86 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.66 7.60 -51.93 -0.39 0.27 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -32.52 367.65 -9.37 -41.90 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -9.26 Total: -2.04 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -1.24 Total: -18.95 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.54 Total: -34.43 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.52 -9.37 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588904349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.797 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds