Wall clock time and date at job start Tue Mar 31 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47057 * 2 1 4 4 C 1.53002 * 109.46937 * 239.99974 * 2 1 3 5 5 C 1.52996 * 109.47147 * 120.00493 * 2 1 3 6 6 H 1.08998 * 109.87548 * 173.05892 * 5 2 1 7 7 C 1.54332 * 110.00731 * 294.15559 * 5 2 1 8 8 C 1.55155 * 102.94071 * 141.68410 * 7 5 2 9 9 C 1.55131 * 101.48552 * 324.33200 * 8 7 5 10 10 N 1.47023 * 109.88557 * 52.03977 * 5 2 1 11 11 C 1.34773 * 125.64799 * 61.44822 * 10 5 2 12 12 O 1.21282 * 120.00007 * 358.55866 * 11 10 5 13 13 C 1.50703 * 120.00085 * 178.55172 * 11 10 5 14 14 C 1.52991 * 109.47145 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47305 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47457 * 179.97438 * 15 14 13 17 17 C 1.50689 * 109.47259 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00236 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00160 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99987 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99761 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47015 * 90.00120 * 21 19 17 23 23 H 1.48494 * 109.47125 * 209.99981 * 21 19 17 24 24 H 1.48498 * 109.47036 * 330.00215 * 21 19 17 25 25 H 1.08998 * 109.46839 * 299.99621 * 1 2 3 26 26 H 1.09003 * 109.47175 * 59.99960 * 1 2 3 27 27 H 1.09000 * 109.46826 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46818 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47798 * 299.99856 * 3 2 1 30 30 H 1.08998 * 109.46987 * 60.00469 * 3 2 1 31 31 H 1.08996 * 109.47460 * 326.10692 * 4 2 1 32 32 H 1.09006 * 109.47096 * 86.10455 * 4 2 1 33 33 H 1.09004 * 109.47336 * 206.09866 * 4 2 1 34 34 H 1.09003 * 110.71679 * 260.04098 * 7 5 2 35 35 H 1.08998 * 110.72207 * 23.31767 * 7 5 2 36 36 H 1.09003 * 111.00467 * 82.56744 * 8 7 5 37 37 H 1.08999 * 111.00266 * 206.42066 * 8 7 5 38 38 H 1.09005 * 110.49342 * 278.45116 * 9 8 7 39 39 H 1.09002 * 110.34391 * 156.05981 * 9 8 7 40 40 H 1.08999 * 109.46869 * 60.00116 * 13 11 10 41 41 H 1.09001 * 109.47310 * 300.00585 * 13 11 10 42 42 H 1.08999 * 109.47356 * 60.00152 * 14 13 11 43 43 H 1.09001 * 109.47280 * 300.00341 * 14 13 11 44 44 H 1.08999 * 109.46792 * 59.99803 * 15 14 13 45 45 H 1.08993 * 109.46990 * 300.00164 * 15 14 13 46 46 H 1.09008 * 109.46692 * 60.00055 * 16 15 14 47 47 H 1.09001 * 109.47225 * 300.00396 * 16 15 14 48 48 H 0.96997 * 119.99851 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2491 6 1 3.1229 -0.8337 1.1960 7 6 1.6566 0.0767 2.5133 8 6 1.2919 -1.0372 3.5300 9 6 0.6245 -2.0909 2.6076 10 7 1.4049 -2.0429 1.3578 11 6 1.5134 -3.0426 0.4605 12 8 2.1597 -2.8805 -0.5528 13 6 0.8317 -4.3621 0.7165 14 6 1.1123 -5.3152 -0.4469 15 6 0.4197 -6.6546 -0.1874 16 6 0.6997 -7.6075 -1.3512 17 6 0.0170 -8.9264 -1.0959 18 1 -0.5587 -9.0708 -0.1936 19 6 0.1282 -9.9494 -2.0137 20 7 -0.4680 -11.1003 -1.7911 21 14 1.1246 -9.7000 -3.5740 22 1 2.5341 -10.0990 -3.3303 23 1 0.5555 -10.5335 -4.6632 24 1 1.0764 -8.2692 -3.9687 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.3569 -1.5310 -1.5057 32 1 2.0953 -0.0162 -2.0788 33 1 3.0312 -1.1303 -1.0535 34 1 2.5031 0.6630 2.8707 35 1 0.7968 0.7177 2.3186 36 1 2.1862 -1.4399 4.0057 37 1 0.5864 -0.6701 4.2753 38 1 -0.4154 -1.8264 2.4160 39 1 0.6882 -3.0821 3.0566 40 1 -0.2431 -4.2043 0.8063 41 1 1.2138 -4.7952 1.6409 42 1 2.1871 -5.4729 -0.5363 43 1 0.7305 -4.8822 -1.3715 44 1 -0.6551 -6.4965 -0.0983 45 1 0.8011 -7.0877 0.7372 46 1 1.7746 -7.7656 -1.4407 47 1 0.3180 -7.1742 -2.2756 48 1 -0.3895 -11.8200 -2.4366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588923337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:14 Heat of formation + Delta-G solvation = -55.464916 kcal Electronic energy + Delta-G solvation = -23084.783313 eV Core-core repulsion = 19945.969970 eV Total energy + Delta-G solvation = -3138.813343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.87414 -38.04216 -35.81911 -34.94314 -32.56824 -31.85023 -30.05162 -28.59009 -27.41377 -27.27561 -25.88319 -23.76767 -21.90156 -21.63784 -20.01441 -19.73421 -18.09585 -17.18076 -16.84725 -16.53411 -15.64774 -15.13771 -14.51815 -14.48580 -14.19041 -13.91026 -13.74339 -13.53012 -13.00194 -12.79876 -12.67227 -12.52626 -12.37277 -12.24498 -12.01843 -11.91952 -11.71685 -11.57910 -11.43298 -11.29229 -11.09839 -10.83217 -10.68671 -10.58523 -10.51062 -10.42447 -9.83797 -9.63663 -9.56383 -9.23442 -9.09566 -8.58112 -8.47704 -5.99030 -3.96305 2.74161 2.92200 3.36688 3.43576 3.49891 4.18437 4.22543 4.47127 4.51676 4.69915 4.76789 4.81687 4.90905 5.05601 5.13822 5.24915 5.29094 5.33814 5.36543 5.37887 5.42106 5.45305 5.51744 5.60562 5.63465 5.72770 5.80647 5.82555 5.85537 5.96651 6.00500 6.06834 6.12636 6.18546 6.29004 6.37680 6.46838 6.68084 6.71889 6.85375 7.01943 7.40526 7.50231 7.53465 7.86748 8.30122 8.60227 9.06131 9.64505 11.14553 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028932 B = 0.003235 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.570793 B = 8653.506683 C = 9277.624025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.129 4.129 5 C 0.147 3.853 6 H 0.071 0.929 7 C -0.131 4.131 8 C -0.134 4.134 9 C 0.099 3.901 10 N -0.617 5.617 11 C 0.518 3.482 12 O -0.520 6.520 13 C -0.134 4.134 14 C -0.105 4.105 15 C -0.102 4.102 16 C -0.015 4.015 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.907 5.907 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.011 0.989 47 H 0.015 0.985 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 27.324 10.778 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.079 4.079 3 C -0.197 4.197 4 C -0.186 4.186 5 C 0.044 3.956 6 H 0.090 0.910 7 C -0.169 4.169 8 C -0.172 4.172 9 C -0.024 4.024 10 N -0.352 5.352 11 C 0.309 3.691 12 O -0.396 6.396 13 C -0.174 4.174 14 C -0.143 4.143 15 C -0.140 4.140 16 C -0.052 4.052 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.029 0.971 47 H 0.033 0.967 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.657 27.142 10.084 29.185 hybrid contribution 0.417 -0.032 -0.724 0.836 sum 4.074 27.110 9.360 28.968 Atomic orbital electron populations 1.21865 0.94601 1.01798 1.01031 1.20942 0.95948 0.95241 0.95814 1.21895 1.01001 0.95119 1.01647 1.22282 1.03168 0.98553 0.94580 1.21670 0.97097 0.82464 0.94379 0.91049 1.22792 1.02362 0.97563 0.94139 1.22819 1.01276 0.95828 0.97275 1.22365 0.95375 1.00292 0.84383 1.48581 1.50664 1.13560 1.22431 1.20654 0.81561 0.84962 0.81942 1.90777 1.41448 1.80970 1.26365 1.21755 1.01209 0.92373 1.02052 1.21475 1.01561 0.94968 0.96275 1.21470 0.99170 0.93238 1.00100 1.19570 0.96367 0.95103 0.94189 1.21191 1.31649 0.95677 1.07174 0.91126 1.25045 0.95362 0.95048 0.98164 1.69922 1.44361 1.03851 1.36466 0.86772 0.80522 0.78662 0.83341 1.20318 1.21462 1.18899 0.92987 0.92939 0.92647 0.92705 0.92559 0.92650 0.90819 0.95098 0.91619 0.90319 0.90078 0.90577 0.89941 0.91360 0.90336 0.89461 0.89319 0.91848 0.91881 0.92925 0.92948 0.97090 0.96651 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 7.91 37.16 0.29 -0.98 16 2 C -0.08 -0.76 0.57 -154.51 -0.09 -0.85 16 3 C -0.14 -1.08 8.01 37.16 0.30 -0.78 16 4 C -0.13 -1.64 6.97 37.16 0.26 -1.38 16 5 C 0.15 1.38 2.34 -66.95 -0.16 1.23 16 6 H 0.07 0.76 7.97 -51.93 -0.41 0.35 16 7 C -0.13 -0.82 5.15 -24.89 -0.13 -0.95 16 8 C -0.13 -0.77 7.10 -24.46 -0.17 -0.94 16 9 C 0.10 0.74 6.72 -2.41 -0.02 0.72 16 10 N -0.62 -6.45 2.07 -162.87 -0.34 -6.78 16 11 C 0.52 7.04 7.11 -10.99 -0.08 6.96 16 12 O -0.52 -8.62 10.73 5.56 0.06 -8.56 16 13 C -0.13 -1.77 4.68 -27.89 -0.13 -1.90 16 14 C -0.10 -1.79 4.50 -26.73 -0.12 -1.91 16 15 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 16 C -0.01 -0.37 4.04 -27.89 -0.11 -0.48 16 17 C -0.52 -15.24 9.66 -34.44 -0.33 -15.58 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.91 -28.63 13.96 55.43 0.77 -27.85 16 21 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 25 H 0.05 0.40 6.42 -51.93 -0.33 0.07 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.61 7.17 -51.93 -0.37 0.23 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 30 H 0.05 0.35 6.70 -51.93 -0.35 0.00 16 31 H 0.07 1.12 5.70 -51.93 -0.30 0.82 16 32 H 0.03 0.36 7.87 -51.93 -0.41 -0.05 16 33 H 0.06 0.94 6.54 -51.93 -0.34 0.60 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.48 5.53 -51.93 -0.29 0.19 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.55 7.47 -51.93 -0.39 0.16 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.05 7.88 -51.93 -0.41 0.64 16 42 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 43 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.01 0.27 7.57 -51.92 -0.39 -0.12 16 47 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 48 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -32.85 358.27 -8.51 -41.37 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -9.02 Total: -4.29 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.72 Total: -17.19 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.44 Total: -34.64 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.06 Total: -8.56 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.85 -8.51 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588923337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.098 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds