Wall clock time and date at job start Tue Mar 31 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47057 * 2 1 4 4 C 1.53002 * 109.46937 * 239.99974 * 2 1 3 5 5 C 1.52996 * 109.47147 * 120.00493 * 2 1 3 6 6 H 1.08998 * 109.87548 * 173.05892 * 5 2 1 7 7 C 1.54332 * 110.00731 * 294.15559 * 5 2 1 8 8 C 1.55155 * 102.94071 * 141.68410 * 7 5 2 9 9 C 1.55131 * 101.48552 * 324.33200 * 8 7 5 10 10 N 1.47023 * 109.88557 * 52.03977 * 5 2 1 11 11 C 1.34773 * 125.64799 * 61.44822 * 10 5 2 12 12 O 1.21282 * 120.00007 * 358.55866 * 11 10 5 13 13 C 1.50703 * 120.00085 * 178.55172 * 11 10 5 14 14 C 1.52991 * 109.47145 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47305 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47457 * 179.97438 * 15 14 13 17 17 C 1.50689 * 109.47259 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00236 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00160 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99987 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99761 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47015 * 90.00120 * 21 19 17 23 23 H 1.48494 * 109.47125 * 209.99981 * 21 19 17 24 24 H 1.48498 * 109.47036 * 330.00215 * 21 19 17 25 25 H 1.08998 * 109.46839 * 299.99621 * 1 2 3 26 26 H 1.09003 * 109.47175 * 59.99960 * 1 2 3 27 27 H 1.09000 * 109.46826 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46818 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47798 * 299.99856 * 3 2 1 30 30 H 1.08998 * 109.46987 * 60.00469 * 3 2 1 31 31 H 1.08996 * 109.47460 * 326.10692 * 4 2 1 32 32 H 1.09006 * 109.47096 * 86.10455 * 4 2 1 33 33 H 1.09004 * 109.47336 * 206.09866 * 4 2 1 34 34 H 1.09003 * 110.71679 * 260.04098 * 7 5 2 35 35 H 1.08998 * 110.72207 * 23.31767 * 7 5 2 36 36 H 1.09003 * 111.00467 * 82.56744 * 8 7 5 37 37 H 1.08999 * 111.00266 * 206.42066 * 8 7 5 38 38 H 1.09005 * 110.49342 * 278.45116 * 9 8 7 39 39 H 1.09002 * 110.34391 * 156.05981 * 9 8 7 40 40 H 1.08999 * 109.46869 * 60.00116 * 13 11 10 41 41 H 1.09001 * 109.47310 * 300.00585 * 13 11 10 42 42 H 1.08999 * 109.47356 * 60.00152 * 14 13 11 43 43 H 1.09001 * 109.47280 * 300.00341 * 14 13 11 44 44 H 1.08999 * 109.46792 * 59.99803 * 15 14 13 45 45 H 1.08993 * 109.46990 * 300.00164 * 15 14 13 46 46 H 1.09008 * 109.46692 * 60.00055 * 16 15 14 47 47 H 1.09001 * 109.47225 * 300.00396 * 16 15 14 48 48 H 0.96997 * 119.99851 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2491 6 1 3.1229 -0.8337 1.1960 7 6 1.6566 0.0767 2.5133 8 6 1.2919 -1.0372 3.5300 9 6 0.6245 -2.0909 2.6076 10 7 1.4049 -2.0429 1.3578 11 6 1.5134 -3.0426 0.4605 12 8 2.1597 -2.8805 -0.5528 13 6 0.8317 -4.3621 0.7165 14 6 1.1123 -5.3152 -0.4469 15 6 0.4197 -6.6546 -0.1874 16 6 0.6997 -7.6075 -1.3512 17 6 0.0170 -8.9264 -1.0959 18 1 -0.5587 -9.0708 -0.1936 19 6 0.1282 -9.9494 -2.0137 20 7 -0.4680 -11.1003 -1.7911 21 14 1.1246 -9.7000 -3.5740 22 1 2.5341 -10.0990 -3.3303 23 1 0.5555 -10.5335 -4.6632 24 1 1.0764 -8.2692 -3.9687 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.3569 -1.5310 -1.5057 32 1 2.0953 -0.0162 -2.0788 33 1 3.0312 -1.1303 -1.0535 34 1 2.5031 0.6630 2.8707 35 1 0.7968 0.7177 2.3186 36 1 2.1862 -1.4399 4.0057 37 1 0.5864 -0.6701 4.2753 38 1 -0.4154 -1.8264 2.4160 39 1 0.6882 -3.0821 3.0566 40 1 -0.2431 -4.2043 0.8063 41 1 1.2138 -4.7952 1.6409 42 1 2.1871 -5.4729 -0.5363 43 1 0.7305 -4.8822 -1.3715 44 1 -0.6551 -6.4965 -0.0983 45 1 0.8011 -7.0877 0.7372 46 1 1.7746 -7.7656 -1.4407 47 1 0.3180 -7.1742 -2.2756 48 1 -0.3895 -11.8200 -2.4366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588923337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:13 Heat of formation + Delta-G solvation = -73.407591 kcal Electronic energy + Delta-G solvation = -23085.561366 eV Core-core repulsion = 19945.969970 eV Total energy + Delta-G solvation = -3139.591396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70826 -38.99828 -36.72844 -36.44710 -34.58621 -32.73491 -31.64978 -29.28390 -28.31903 -28.13608 -27.35240 -24.82918 -23.32337 -22.26710 -21.75612 -20.63061 -18.90995 -18.87381 -18.06330 -17.62220 -16.71312 -16.38325 -16.09595 -15.56000 -15.21021 -14.89083 -14.74675 -14.61280 -14.28064 -13.96867 -13.78606 -13.62367 -13.49465 -13.35619 -13.25825 -12.89257 -12.86418 -12.67410 -12.36991 -12.33708 -12.07721 -11.96997 -11.93879 -11.76710 -11.60414 -11.41995 -11.37088 -11.28531 -11.25727 -11.19047 -10.77387 -10.35185 -9.43953 -8.31096 -6.34156 1.33482 1.34938 1.47952 1.72975 2.08865 2.34703 3.04243 3.50891 3.65295 3.82279 3.89768 4.01691 4.05666 4.10867 4.14516 4.25356 4.47391 4.50733 4.56548 4.61550 4.65423 4.73360 4.77880 4.79460 4.82898 4.86611 4.93169 4.99150 5.03130 5.05070 5.12376 5.13747 5.16885 5.17784 5.24817 5.26302 5.31363 5.38823 5.50256 5.57472 5.62759 5.63520 5.64820 5.67353 6.28192 6.62253 6.73640 7.30622 7.31577 8.85622 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028932 B = 0.003235 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.570793 B = 8653.506683 C = 9277.624025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.078 4.078 3 C -0.134 4.134 4 C -0.121 4.121 5 C 0.141 3.859 6 H 0.053 0.947 7 C -0.122 4.122 8 C -0.126 4.126 9 C 0.089 3.911 10 N -0.613 5.613 11 C 0.512 3.488 12 O -0.560 6.560 13 C -0.126 4.126 14 C -0.093 4.093 15 C -0.093 4.093 16 C -0.015 4.015 17 C -0.531 4.531 18 H 0.037 0.963 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.254 1.254 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.012 0.988 47 H 0.013 0.987 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.474 29.886 12.024 32.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.079 4.079 3 C -0.192 4.192 4 C -0.178 4.178 5 C 0.038 3.962 6 H 0.071 0.929 7 C -0.160 4.160 8 C -0.164 4.164 9 C -0.033 4.033 10 N -0.346 5.346 11 C 0.303 3.697 12 O -0.439 6.439 13 C -0.166 4.166 14 C -0.132 4.132 15 C -0.130 4.130 16 C -0.053 4.053 17 C -0.569 4.569 18 H 0.055 0.945 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.177 1.177 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.030 0.970 47 H 0.031 0.969 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.791 29.734 11.376 32.061 hybrid contribution 0.330 -0.858 -1.051 1.397 sum 4.121 28.875 10.325 30.941 Atomic orbital electron populations 1.21817 0.94015 1.00874 1.02085 1.20935 0.96330 0.96193 0.94399 1.21855 1.00914 0.93640 1.02760 1.22145 1.01287 0.97873 0.96468 1.21799 0.96066 0.82356 0.95983 0.92888 1.22795 1.03389 0.97490 0.92318 1.22825 1.01664 0.94771 0.97096 1.22667 0.95735 1.01586 0.83324 1.48591 1.50152 1.13249 1.22620 1.20660 0.81355 0.85681 0.82024 1.90778 1.43297 1.81761 1.28101 1.21626 1.02434 0.91612 1.00880 1.21249 1.00210 0.94162 0.97533 1.21329 0.99741 0.93720 0.98246 1.19559 0.95713 0.93963 0.96048 1.21540 1.31436 0.97875 1.06044 0.94471 1.25986 0.96617 0.94657 1.01949 1.70058 1.46069 1.04943 1.38064 0.85696 0.79113 0.79209 0.78886 1.19169 1.20593 1.17747 0.90614 0.93187 0.94515 0.92877 0.92603 0.90362 0.93536 0.94960 0.93918 0.88841 0.88881 0.90662 0.87495 0.90220 0.89702 0.87707 0.87465 0.93018 0.93168 0.92636 0.92566 0.96955 0.96885 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 7.91 71.98 0.57 -1.65 16 2 C -0.08 -1.43 0.57 -52.18 -0.03 -1.46 16 3 C -0.13 -1.80 8.01 71.98 0.58 -1.23 16 4 C -0.12 -3.18 6.97 71.98 0.50 -2.67 16 5 C 0.14 2.44 2.34 45.34 0.11 2.54 16 6 H 0.05 1.11 7.97 -2.39 -0.02 1.09 16 7 C -0.12 -1.11 5.15 31.79 0.16 -0.94 16 8 C -0.13 -0.97 7.10 32.06 0.23 -0.74 16 9 C 0.09 1.07 6.72 86.93 0.58 1.66 16 10 N -0.61 -11.97 2.07 -787.60 -1.63 -13.59 16 11 C 0.51 13.77 7.11 87.66 0.62 14.40 16 12 O -0.56 -19.20 10.73 -3.04 -0.03 -19.23 16 13 C -0.13 -3.18 4.68 29.85 0.14 -3.04 16 14 C -0.09 -3.17 4.50 30.59 0.14 -3.03 16 15 C -0.09 -3.69 5.15 30.60 0.16 -3.53 16 16 C -0.02 -0.77 4.04 29.84 0.12 -0.65 16 17 C -0.53 -31.78 9.66 25.60 0.25 -31.53 16 18 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 19 C 0.00 0.28 5.47 84.66 0.46 0.74 16 20 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 21 Si 0.95 46.60 27.47 68.60 1.88 48.48 16 22 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.25 -11.93 6.54 99.48 0.65 -11.28 16 25 H 0.08 0.91 6.42 -2.39 -0.02 0.90 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 27 H 0.04 0.76 7.17 -2.39 -0.02 0.74 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.76 8.11 -2.39 -0.02 0.75 16 30 H 0.08 0.71 6.70 -2.39 -0.02 0.69 16 31 H 0.05 1.48 5.70 -2.39 -0.01 1.46 16 32 H 0.03 0.78 7.87 -2.38 -0.02 0.77 16 33 H 0.04 1.29 6.54 -2.39 -0.02 1.28 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 0.66 5.53 -2.39 -0.01 0.65 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.08 0.94 7.47 -2.39 -0.02 0.92 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.11 2.31 7.88 -2.39 -0.02 2.29 16 42 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 43 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 44 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.01 0.60 7.57 -2.38 -0.02 0.58 16 47 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 48 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -73.62 358.27 5.95 -67.67 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.84 Total: 8.62 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 4.59 Total: -31.14 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.33 Total: -74.40 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.03 Total: -19.23 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.88 Total: 48.48 kcal Total: -73.62 5.95 -67.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588923337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.738 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds