Wall clock time and date at job start Tue Mar 31 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00011 * 2 1 4 4 H 1.48502 * 109.47499 * 269.99806 * 3 2 1 5 5 H 1.48503 * 109.47001 * 29.99937 * 3 2 1 6 6 H 1.48509 * 109.47274 * 149.99820 * 3 2 1 7 7 C 1.37883 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99459 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46611 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99901 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47154 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.46987 * 64.58774 * 12 11 10 14 14 C 1.46847 * 110.99762 * 199.93108 * 13 12 11 15 15 C 1.53041 * 109.52654 * 174.15730 * 14 13 12 16 16 C 1.53123 * 109.27515 * 59.17687 * 15 14 13 17 17 C 1.53002 * 109.57208 * 182.40708 * 16 15 14 18 18 C 1.54266 * 110.03509 * 297.62615 * 17 16 15 19 19 C 1.54962 * 104.15796 * 217.13616 * 18 17 16 20 20 C 1.54884 * 102.77934 * 37.88779 * 19 18 17 21 21 C 1.53868 * 110.03200 * 180.40434 * 17 16 15 22 22 C 1.53111 * 109.16074 * 302.34854 * 16 15 14 23 23 C 1.46841 * 111.00691 * 75.72155 * 13 12 11 24 24 H 0.97001 * 120.00507 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47365 * 60.00411 * 9 7 2 26 26 H 1.08994 * 109.47488 * 299.99911 * 9 7 2 27 27 H 1.08996 * 109.47140 * 60.00017 * 11 10 9 28 28 H 1.09009 * 109.46995 * 299.99803 * 11 10 9 29 29 H 1.08993 * 109.47065 * 304.58297 * 12 11 10 30 30 H 1.09002 * 109.46614 * 184.58313 * 12 11 10 31 31 H 1.08999 * 109.46496 * 294.17381 * 14 13 12 32 32 H 1.09003 * 109.46582 * 54.13966 * 14 13 12 33 33 H 1.08997 * 109.50585 * 299.23882 * 15 14 13 34 34 H 1.09001 * 109.50519 * 179.11742 * 15 14 13 35 35 H 1.09000 * 109.52036 * 62.25599 * 16 15 14 36 36 H 1.09003 * 110.01277 * 59.01638 * 17 16 15 37 37 H 1.08999 * 110.48648 * 335.77894 * 18 17 16 38 38 H 1.09002 * 110.48573 * 98.42678 * 18 17 16 39 39 H 1.09002 * 110.72176 * 279.57279 * 19 18 17 40 40 H 1.09000 * 110.92416 * 156.29581 * 19 18 17 41 41 H 1.08998 * 110.48868 * 203.40520 * 20 19 18 42 42 H 1.09004 * 110.60238 * 80.81719 * 20 19 18 43 43 H 1.09000 * 110.03497 * 238.57378 * 21 17 16 44 44 H 1.09002 * 110.03441 * 0.02562 * 21 17 16 45 45 H 1.08998 * 109.50430 * 297.71202 * 22 16 15 46 46 H 1.09000 * 109.50132 * 177.59909 * 22 16 15 47 47 H 1.09000 * 109.46108 * 305.85622 * 23 13 12 48 48 H 1.09001 * 109.46254 * 65.82966 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 7 3.4135 -5.8815 1.2522 14 6 4.7162 -6.5448 1.1126 15 6 5.5421 -6.3223 2.3817 16 6 4.7845 -6.8920 3.5842 17 6 5.5764 -6.6200 4.8647 18 6 6.9413 -7.3364 4.8043 19 6 7.1815 -7.8174 6.2577 20 6 5.7652 -8.2457 6.7153 21 6 4.8290 -7.1974 6.0794 22 6 3.4123 -6.2193 3.6783 23 6 2.6482 -6.4448 2.3717 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 0.9453 -4.9822 -0.8902 28 1 0.9446 -4.9827 0.8898 29 1 3.3179 -5.7999 -0.8449 30 1 2.1816 -6.9379 -0.0819 31 1 4.5652 -7.6135 0.9603 32 1 5.2464 -6.1275 0.2565 33 1 5.7053 -5.2544 2.5271 34 1 6.5028 -6.8279 2.2840 35 1 4.6553 -7.9669 3.4573 36 1 5.7230 -5.5474 4.9919 37 1 6.8960 -8.1867 4.1239 38 1 7.7233 -6.6420 4.4972 39 1 7.5574 -7.0026 6.8764 40 1 7.8670 -8.6646 6.2791 41 1 5.6899 -8.2150 7.8023 42 1 5.5279 -9.2433 6.3456 43 1 4.6136 -6.4052 6.7965 44 1 3.9022 -7.6719 5.7566 45 1 3.5419 -5.1498 3.8441 46 1 2.8514 -6.6512 4.5071 47 1 1.6763 -5.9549 2.4301 48 1 2.5070 -7.5140 2.2136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590162064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:17 Heat of formation + Delta-G solvation = -77.039535 kcal Electronic energy + Delta-G solvation = -22698.437446 eV Core-core repulsion = 19558.688557 eV Total energy + Delta-G solvation = -3139.748889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.72614 -37.85689 -36.33627 -33.71824 -32.55601 -30.92869 -29.66315 -28.74704 -27.58030 -26.39385 -23.51622 -23.03249 -22.20900 -21.06729 -20.61285 -19.80943 -19.48616 -16.39972 -16.30260 -15.72613 -15.57360 -15.24138 -14.80036 -14.27692 -14.19517 -14.14609 -13.68300 -13.51647 -13.39164 -13.18524 -12.85442 -12.24626 -11.99333 -11.80265 -11.63323 -11.40343 -11.27874 -11.18291 -11.06235 -11.04214 -10.90655 -10.76882 -10.76105 -10.65084 -10.45064 -10.34377 -10.04568 -10.02769 -9.80669 -9.00379 -8.71408 -8.05503 -7.94788 -6.03842 -4.04382 3.34881 3.39508 3.45772 4.09376 4.39178 4.41699 4.47890 4.51504 4.88607 4.92650 4.94996 5.01651 5.27889 5.32590 5.34003 5.38253 5.41346 5.44628 5.48183 5.55712 5.57104 5.61280 5.66389 5.69234 5.73322 5.78472 5.81120 5.88453 5.90899 5.99412 6.03011 6.07291 6.13444 6.15139 6.22077 6.27995 6.31651 6.35438 6.38237 6.56941 7.19733 7.38148 7.40332 7.52968 7.88369 8.25531 8.71941 9.11099 9.60217 11.07954 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003324 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.149877 B = 8421.795282 C = 9107.242642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.508 4.508 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.379 6.379 11 C 0.070 3.930 12 C 0.061 3.939 13 N -0.523 5.523 14 C 0.059 3.941 15 C -0.111 4.111 16 C -0.078 4.078 17 C -0.086 4.086 18 C -0.119 4.119 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.112 4.112 23 C 0.057 3.943 24 H 0.263 0.737 25 H 0.001 0.999 26 H 0.002 0.998 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.608 -18.912 9.939 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.299 6.299 11 C -0.009 4.009 12 C -0.067 4.067 13 N -0.247 5.247 14 C -0.069 4.069 15 C -0.149 4.149 16 C -0.096 4.096 17 C -0.105 4.105 18 C -0.156 4.156 19 C -0.164 4.164 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.150 4.150 23 C -0.071 4.071 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 10.735 -18.258 10.040 23.439 hybrid contribution -0.257 0.027 -0.226 0.343 sum 10.479 -18.231 9.814 23.205 Atomic orbital electron populations 1.69966 1.06099 1.26993 1.51020 1.24949 0.94953 0.99383 0.95344 0.86357 0.79721 0.82374 0.78157 1.20548 1.21159 1.19604 1.21072 0.94071 0.89386 1.50144 0.91556 1.20156 0.88867 0.83974 0.95002 1.87937 1.34603 1.12345 1.94992 1.22215 0.93840 0.86284 0.98538 1.22123 0.96331 0.96004 0.92193 1.61754 1.03136 1.55925 1.03909 1.22066 0.90795 0.95550 0.98494 1.21645 0.97426 1.02212 0.93588 1.21275 0.95029 0.99224 0.94083 1.21812 0.94340 1.00176 0.94170 1.22446 0.96874 0.99851 0.96447 1.22511 0.96765 1.00438 0.96679 1.22357 0.95167 0.98872 0.99854 1.22260 0.98595 0.98225 0.96922 1.21679 0.95068 1.02046 0.96222 1.22104 0.97557 0.96207 0.91260 0.92784 0.98139 0.97983 0.94556 0.94772 0.90394 0.94394 0.95864 0.90823 0.90748 0.91914 0.91943 0.90852 0.91678 0.91775 0.91693 0.91996 0.92101 0.91961 0.91964 0.91519 0.90648 0.91789 0.90628 0.95811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.35 29.54 -169.99 -5.02 17.33 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -15.42 9.43 -34.44 -0.32 -15.75 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.53 5.69 36.01 0.20 5.73 16 10 O -0.38 -9.55 10.27 -35.23 -0.36 -9.91 16 11 C 0.07 1.35 6.13 37.16 0.23 1.57 16 12 C 0.06 0.96 5.39 -3.83 -0.02 0.94 16 13 N -0.52 -8.16 4.53 -234.68 -1.06 -9.22 16 14 C 0.06 0.76 5.43 -3.83 -0.02 0.74 16 15 C -0.11 -1.28 5.13 -26.65 -0.14 -1.42 16 16 C -0.08 -0.82 1.53 -90.50 -0.14 -0.96 16 17 C -0.09 -0.83 2.51 -89.50 -0.22 -1.05 16 18 C -0.12 -1.01 5.37 -25.03 -0.13 -1.14 16 19 C -0.13 -0.98 6.91 -24.70 -0.17 -1.15 16 20 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 21 C -0.12 -1.08 5.94 -25.61 -0.15 -1.23 16 22 C -0.11 -1.37 5.08 -26.66 -0.14 -1.51 16 23 C 0.06 0.78 5.29 -3.84 -0.02 0.76 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 26 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.03 0.65 6.71 -51.92 -0.35 0.30 16 29 H 0.08 1.22 7.79 -51.93 -0.40 0.82 16 30 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.62 7.34 -51.93 -0.38 0.24 16 35 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.55 7.74 -51.93 -0.40 0.15 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.59 6.38 -51.93 -0.33 0.26 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 0.69 6.60 -51.93 -0.34 0.34 16 47 H 0.08 1.12 6.65 -51.93 -0.35 0.78 16 48 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -31.71 364.42 -10.80 -42.51 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -9.27 Total: -5.26 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -1.31 Total: -14.10 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.33 Total: -36.06 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.36 Total: -9.91 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.71 -10.80 -42.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590162064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.530 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds