Wall clock time and date at job start Tue Mar 31 2020 05:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00011 * 2 1 4 4 H 1.48502 * 109.47499 * 269.99806 * 3 2 1 5 5 H 1.48503 * 109.47001 * 29.99937 * 3 2 1 6 6 H 1.48509 * 109.47274 * 149.99820 * 3 2 1 7 7 C 1.37883 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99459 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46611 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99901 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47154 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.46987 * 64.58774 * 12 11 10 14 14 C 1.46847 * 110.99762 * 199.93108 * 13 12 11 15 15 C 1.53041 * 109.52654 * 174.15730 * 14 13 12 16 16 C 1.53123 * 109.27515 * 59.17687 * 15 14 13 17 17 C 1.53002 * 109.57208 * 182.40708 * 16 15 14 18 18 C 1.54266 * 110.03509 * 297.62615 * 17 16 15 19 19 C 1.54962 * 104.15796 * 217.13616 * 18 17 16 20 20 C 1.54884 * 102.77934 * 37.88779 * 19 18 17 21 21 C 1.53868 * 110.03200 * 180.40434 * 17 16 15 22 22 C 1.53111 * 109.16074 * 302.34854 * 16 15 14 23 23 C 1.46841 * 111.00691 * 75.72155 * 13 12 11 24 24 H 0.97001 * 120.00507 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47365 * 60.00411 * 9 7 2 26 26 H 1.08994 * 109.47488 * 299.99911 * 9 7 2 27 27 H 1.08996 * 109.47140 * 60.00017 * 11 10 9 28 28 H 1.09009 * 109.46995 * 299.99803 * 11 10 9 29 29 H 1.08993 * 109.47065 * 304.58297 * 12 11 10 30 30 H 1.09002 * 109.46614 * 184.58313 * 12 11 10 31 31 H 1.08999 * 109.46496 * 294.17381 * 14 13 12 32 32 H 1.09003 * 109.46582 * 54.13966 * 14 13 12 33 33 H 1.08997 * 109.50585 * 299.23882 * 15 14 13 34 34 H 1.09001 * 109.50519 * 179.11742 * 15 14 13 35 35 H 1.09000 * 109.52036 * 62.25599 * 16 15 14 36 36 H 1.09003 * 110.01277 * 59.01638 * 17 16 15 37 37 H 1.08999 * 110.48648 * 335.77894 * 18 17 16 38 38 H 1.09002 * 110.48573 * 98.42678 * 18 17 16 39 39 H 1.09002 * 110.72176 * 279.57279 * 19 18 17 40 40 H 1.09000 * 110.92416 * 156.29581 * 19 18 17 41 41 H 1.08998 * 110.48868 * 203.40520 * 20 19 18 42 42 H 1.09004 * 110.60238 * 80.81719 * 20 19 18 43 43 H 1.09000 * 110.03497 * 238.57378 * 21 17 16 44 44 H 1.09002 * 110.03441 * 0.02562 * 21 17 16 45 45 H 1.08998 * 109.50430 * 297.71202 * 22 16 15 46 46 H 1.09000 * 109.50132 * 177.59909 * 22 16 15 47 47 H 1.09000 * 109.46108 * 305.85622 * 23 13 12 48 48 H 1.09001 * 109.46254 * 65.82966 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 7 3.4135 -5.8815 1.2522 14 6 4.7162 -6.5448 1.1126 15 6 5.5421 -6.3223 2.3817 16 6 4.7845 -6.8920 3.5842 17 6 5.5764 -6.6200 4.8647 18 6 6.9413 -7.3364 4.8043 19 6 7.1815 -7.8174 6.2577 20 6 5.7652 -8.2457 6.7153 21 6 4.8290 -7.1974 6.0794 22 6 3.4123 -6.2193 3.6783 23 6 2.6482 -6.4448 2.3717 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 0.9453 -4.9822 -0.8902 28 1 0.9446 -4.9827 0.8898 29 1 3.3179 -5.7999 -0.8449 30 1 2.1816 -6.9379 -0.0819 31 1 4.5652 -7.6135 0.9603 32 1 5.2464 -6.1275 0.2565 33 1 5.7053 -5.2544 2.5271 34 1 6.5028 -6.8279 2.2840 35 1 4.6553 -7.9669 3.4573 36 1 5.7230 -5.5474 4.9919 37 1 6.8960 -8.1867 4.1239 38 1 7.7233 -6.6420 4.4972 39 1 7.5574 -7.0026 6.8764 40 1 7.8670 -8.6646 6.2791 41 1 5.6899 -8.2150 7.8023 42 1 5.5279 -9.2433 6.3456 43 1 4.6136 -6.4052 6.7965 44 1 3.9022 -7.6719 5.7566 45 1 3.5419 -5.1498 3.8441 46 1 2.8514 -6.6512 4.5071 47 1 1.6763 -5.9549 2.4301 48 1 2.5070 -7.5140 2.2136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590162064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:16 Heat of formation + Delta-G solvation = -95.450389 kcal Electronic energy + Delta-G solvation = -22699.235801 eV Core-core repulsion = 19558.688557 eV Total energy + Delta-G solvation = -3140.547244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.66236 -38.98877 -37.98939 -35.11630 -34.48829 -31.93368 -30.96523 -29.43668 -29.23878 -27.91650 -24.65567 -24.43384 -23.99121 -22.34672 -21.29187 -20.77776 -20.29840 -18.61600 -17.54307 -17.34590 -16.60547 -16.46104 -16.17357 -15.75103 -15.66481 -15.40715 -14.88105 -14.60502 -14.40187 -14.21315 -14.06338 -13.66267 -13.52992 -13.10554 -12.99319 -12.74182 -12.71728 -12.43514 -12.28012 -12.16660 -12.07068 -11.87774 -11.83766 -11.75367 -11.70290 -11.40790 -11.25728 -11.15941 -10.96886 -10.85065 -10.83479 -10.16678 -9.08851 -8.31614 -6.43603 1.39038 1.42425 1.54682 2.35365 2.96414 3.01774 3.26694 3.65853 3.71660 3.77814 3.99502 4.03284 4.15431 4.24282 4.30980 4.37009 4.44762 4.51941 4.57373 4.61633 4.63451 4.68116 4.70287 4.78257 4.82401 4.84963 4.86602 4.89959 4.93955 4.97334 5.01919 5.09487 5.11322 5.14798 5.19478 5.25042 5.28619 5.36835 5.45354 5.51974 5.53392 5.55904 5.66651 5.98127 6.22077 6.31479 6.58210 6.87719 7.28725 8.80964 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003324 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.149877 B = 8421.795282 C = 9107.242642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.210 3.790 10 O -0.395 6.395 11 C 0.060 3.940 12 C 0.070 3.930 13 N -0.554 5.554 14 C 0.060 3.940 15 C -0.107 4.107 16 C -0.068 4.068 17 C -0.086 4.086 18 C -0.117 4.117 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.109 4.109 23 C 0.057 3.943 24 H 0.271 0.729 25 H -0.017 1.017 26 H -0.021 1.021 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.045 0.955 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.922 -19.961 10.335 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.135 3.865 10 O -0.314 6.314 11 C -0.018 4.018 12 C -0.058 4.058 13 N -0.279 5.279 14 C -0.068 4.068 15 C -0.145 4.145 16 C -0.087 4.087 17 C -0.104 4.104 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.147 4.147 23 C -0.071 4.071 24 H 0.079 0.921 25 H 0.001 0.999 26 H -0.003 1.003 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.050 -19.335 10.436 25.059 hybrid contribution -0.722 0.293 -0.345 0.852 sum 11.328 -19.042 10.091 24.346 Atomic orbital electron populations 1.70072 1.07768 1.28609 1.50704 1.25979 0.95983 1.03412 0.93946 0.85181 0.78335 0.76967 0.78910 1.19112 1.19791 1.18999 1.21374 0.93984 0.90917 1.51975 0.92265 1.19766 0.88664 0.85093 0.92962 1.87894 1.34655 1.13875 1.95014 1.22578 0.95588 0.84706 0.98900 1.22024 0.95447 0.95759 0.92541 1.61690 1.04393 1.57697 1.04168 1.22101 0.89461 0.96350 0.98867 1.21621 0.98411 1.00909 0.93538 1.21204 0.93840 0.99494 0.94140 1.21770 0.95209 0.99388 0.94048 1.22432 0.95874 0.99855 0.97258 1.22516 0.96989 1.00802 0.95965 1.22355 0.94770 0.98680 1.00202 1.22256 0.98850 0.98453 0.96509 1.21649 0.96401 1.00488 0.96125 1.22105 0.96639 0.97003 0.91307 0.92056 0.99916 1.00289 0.93650 0.94864 0.90416 0.91134 0.93856 0.91427 0.93339 0.89789 0.90588 0.92633 0.91004 0.91917 0.91894 0.90834 0.91492 0.91320 0.92475 0.91418 0.93634 0.90235 0.92583 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 2 C 0.00 0.29 5.46 84.66 0.46 0.76 16 3 Si 0.98 45.77 29.54 68.60 2.03 47.79 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -33.91 9.43 25.60 0.24 -33.66 16 8 H 0.06 3.67 7.81 -2.92 -0.02 3.65 16 9 C 0.21 12.45 5.69 71.24 0.41 12.86 16 10 O -0.39 -20.53 10.27 -148.98 -1.53 -22.06 16 11 C 0.06 2.35 6.13 71.98 0.44 2.79 16 12 C 0.07 2.15 5.39 86.31 0.47 2.61 16 13 N -0.55 -17.05 4.53 -896.39 -4.06 -21.11 16 14 C 0.06 1.46 5.43 86.33 0.47 1.93 16 15 C -0.11 -2.37 5.13 30.65 0.16 -2.22 16 16 C -0.07 -1.36 1.53 -10.71 -0.02 -1.37 16 17 C -0.09 -1.56 2.51 -10.07 -0.03 -1.58 16 18 C -0.12 -1.77 5.37 31.69 0.17 -1.60 16 19 C -0.13 -1.68 6.91 31.91 0.22 -1.46 16 20 C -0.12 -1.66 6.83 31.67 0.22 -1.44 16 21 C -0.12 -2.01 5.94 31.32 0.19 -1.83 16 22 C -0.11 -2.63 5.08 30.64 0.16 -2.48 16 23 C 0.06 1.53 5.29 86.33 0.46 1.99 16 24 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 25 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 26 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.03 1.31 6.71 -2.38 -0.02 1.29 16 29 H 0.08 2.37 7.79 -2.39 -0.02 2.35 16 30 H 0.07 1.72 8.00 -2.39 -0.02 1.70 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.72 7.93 -2.39 -0.02 1.70 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.50 7.34 -2.39 -0.02 1.48 16 35 H 0.08 1.36 8.13 -2.39 -0.02 1.34 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.01 7.74 -2.39 -0.02 0.99 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 1.09 6.38 -2.39 -0.02 1.07 16 45 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.08 1.64 6.60 -2.39 -0.02 1.63 16 47 H 0.06 1.69 6.65 -2.39 -0.02 1.68 16 48 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -69.04 364.42 1.61 -67.43 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.88 Total: 10.02 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 4.00 Total: -24.70 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -3.77 Total: -78.48 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -1.53 Total: -22.06 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -69.04 1.61 -67.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590162064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.020 kcal (2) G-P(sol) polarization free energy of solvation -69.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds