Wall clock time and date at job start Tue Mar 31 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 110.05663 * 2 1 4 4 C 1.54257 * 110.03489 * 238.58213 * 2 1 3 5 5 C 1.54885 * 104.19872 * 217.10488 * 4 2 1 6 6 C 1.54887 * 102.74813 * 37.94349 * 5 4 2 7 7 C 1.53879 * 110.03174 * 121.41368 * 2 1 3 8 8 H 1.09000 * 110.03015 * 238.62004 * 7 2 1 9 9 C 1.52997 * 110.03290 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47194 * 184.99958 * 9 7 2 11 11 C 1.34777 * 120.00271 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99854 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.46912 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47060 * 179.97438 * 14 13 11 16 16 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00113 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99923 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47375 * 89.99678 * 21 19 17 23 23 H 1.48508 * 109.47196 * 209.99673 * 21 19 17 24 24 H 1.48504 * 109.47051 * 329.99297 * 21 19 17 25 25 H 1.08999 * 109.47305 * 298.58499 * 1 2 3 26 26 H 1.09004 * 109.47391 * 58.58280 * 1 2 3 27 27 H 1.09000 * 109.47377 * 178.58764 * 1 2 3 28 28 H 1.08993 * 109.47529 * 181.41637 * 3 2 1 29 29 H 1.08997 * 109.47274 * 301.42103 * 3 2 1 30 30 H 1.09005 * 109.47048 * 61.41670 * 3 2 1 31 31 H 1.09003 * 110.48630 * 335.78418 * 4 2 1 32 32 H 1.09000 * 110.48543 * 98.42624 * 4 2 1 33 33 H 1.09002 * 110.75781 * 156.25313 * 5 4 2 34 34 H 1.08996 * 110.76052 * 279.44197 * 5 4 2 35 35 H 1.08999 * 110.48581 * 203.38081 * 6 5 4 36 36 H 1.09002 * 110.48781 * 80.73676 * 6 5 4 37 37 H 1.08998 * 109.47624 * 64.99455 * 9 7 2 38 38 H 1.09002 * 109.47045 * 304.99831 * 9 7 2 39 39 H 0.97005 * 120.00266 * 359.97438 * 10 9 7 40 40 H 1.09001 * 109.46980 * 59.99654 * 13 11 10 41 41 H 1.08992 * 109.47158 * 299.99760 * 13 11 10 42 42 H 1.09002 * 109.47398 * 300.00078 * 14 13 11 43 43 H 1.09001 * 109.47194 * 60.00258 * 14 13 11 44 44 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 45 45 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 46 46 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 47 47 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 48 48 H 0.97008 * 120.00167 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7554 -1.2367 5 6 3.3136 -1.5007 -0.7190 6 6 2.8874 -1.9406 0.7036 7 6 2.0571 -0.7535 1.2338 8 1 2.6859 -0.0950 1.8329 9 6 0.8861 -1.2673 2.0739 10 7 1.3980 -1.8773 3.3036 11 6 0.5418 -2.4023 4.2024 12 8 -0.6523 -2.3693 3.9934 13 6 1.0684 -3.0303 5.4671 14 6 -0.1026 -3.5440 6.3072 15 6 0.4320 -4.1821 7.5909 16 6 -0.7388 -4.6964 8.4308 17 6 -0.2122 -5.3255 9.6949 18 1 0.8513 -5.3551 9.8809 19 6 -1.0880 -5.8623 10.6145 20 7 -0.6284 -6.4117 11.7174 21 14 -2.9274 -5.8104 10.2932 22 1 -3.3366 -7.0350 9.5597 23 1 -3.6542 -5.7420 11.5865 24 1 -3.2540 -4.6128 9.4781 25 1 -0.3634 0.4917 0.9024 26 1 -0.3634 0.5357 -0.8770 27 1 -0.3634 -1.0273 -0.0253 28 1 3.1443 1.4263 -0.0254 29 1 1.6761 1.9623 -0.8769 30 1 1.7174 1.9472 0.9025 31 1 1.3142 -1.4660 -1.5965 32 1 2.3297 -0.0536 -2.0254 33 1 3.5325 -2.3679 -1.3421 34 1 4.1718 -0.8299 -0.6781 35 1 3.7637 -2.1036 1.3310 36 1 2.2771 -2.8426 0.6572 37 1 0.3288 -2.0109 1.5042 38 1 0.2283 -0.4359 2.3272 39 1 2.3532 -1.9040 3.4706 40 1 1.6256 -2.2868 6.0371 41 1 1.7262 -3.8615 5.2134 42 1 -0.7601 -2.7125 6.5609 43 1 -0.6601 -4.2873 5.7373 44 1 1.0894 -5.0137 7.3368 45 1 0.9899 -3.4392 8.1610 46 1 -1.3964 -3.8651 8.6848 47 1 -1.2962 -5.4395 7.8605 48 1 -1.2447 -6.7891 12.3646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590528348.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:02 Heat of formation + Delta-G solvation = -87.646373 kcal Electronic energy + Delta-G solvation = -21875.730855 eV Core-core repulsion = 18735.522019 eV Total energy + Delta-G solvation = -3140.208836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.37250 -39.19021 -35.16504 -34.62900 -32.65432 -32.55802 -30.76822 -29.63657 -27.89360 -26.27069 -25.19485 -23.78749 -21.99761 -20.96945 -20.29504 -19.98943 -18.61058 -16.79541 -16.64735 -16.42916 -15.89209 -15.40571 -15.31597 -14.67759 -14.19493 -14.06924 -13.83140 -13.78960 -13.40613 -13.27701 -12.69825 -12.61012 -12.36874 -12.18339 -12.01222 -11.92180 -11.71862 -11.46100 -11.16937 -11.07459 -10.98972 -10.92702 -10.84112 -10.80014 -10.70425 -10.50607 -9.92356 -9.77901 -9.61835 -9.37542 -9.11018 -9.09344 -8.47372 -5.98605 -3.95882 2.73970 3.14602 3.37060 3.43903 3.50339 4.05987 4.13439 4.19995 4.52046 4.73688 4.86325 4.87434 4.89361 4.92834 5.05750 5.08760 5.11185 5.27887 5.29275 5.33364 5.36747 5.39282 5.43136 5.49096 5.56667 5.58636 5.63809 5.69469 5.71981 5.83345 5.88078 5.95742 5.96889 6.06345 6.07243 6.19457 6.36149 6.46355 6.71931 6.86042 7.02314 7.41016 7.45685 7.53831 7.87030 8.28012 8.60516 9.06459 9.64885 11.14874 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040924 B = 0.002347 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.031048 B =11929.550539 C =12251.012355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.097 4.097 8 H 0.080 0.920 9 C 0.123 3.877 10 N -0.738 5.738 11 C 0.511 3.489 12 O -0.539 6.539 13 C -0.139 4.139 14 C -0.106 4.106 15 C -0.102 4.102 16 C -0.016 4.016 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.264 1.264 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.398 0.602 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.015 0.985 47 H 0.011 0.989 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.110 14.680 -28.179 33.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.196 4.196 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.159 4.159 7 C -0.115 4.115 8 H 0.098 0.902 9 C 0.000 4.000 10 N -0.391 5.391 11 C 0.298 3.702 12 O -0.415 6.415 13 C -0.179 4.179 14 C -0.144 4.144 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.137 4.137 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.232 0.768 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.029 0.971 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.162 14.622 -28.166 32.768 hybrid contribution -0.440 -0.051 0.044 0.445 sum 7.722 14.571 -28.122 32.601 Atomic orbital electron populations 1.22070 0.94257 1.02292 1.01971 1.21117 0.95652 0.95253 0.94110 1.21912 1.00837 0.94981 1.01848 1.22502 0.97328 0.98810 0.96698 1.22467 0.97675 0.99860 0.96209 1.22474 0.99399 0.97722 0.96303 1.22116 0.96264 0.97134 0.96017 0.90209 1.21647 0.95843 0.97717 0.84792 1.46153 1.10237 1.61531 1.21222 1.21061 0.86604 0.77496 0.85022 1.90694 1.15921 1.57216 1.77686 1.21772 1.01170 1.01382 0.93594 1.21474 0.95866 1.00790 0.96259 1.21474 0.99484 0.99103 0.93951 1.19578 0.94394 0.95938 0.95405 1.21188 0.95348 1.37012 1.02112 0.91117 1.25047 0.98901 0.94789 0.94935 1.69922 1.34965 1.39719 1.09958 0.86770 0.85829 0.79148 0.77530 1.20328 1.21474 1.18888 0.92046 0.92687 0.92043 0.92571 0.92582 0.92555 0.91407 0.91595 0.91594 0.91550 0.91546 0.91180 0.91438 0.91322 0.76802 0.89083 0.89075 0.91839 0.91850 0.92893 0.92866 0.96626 0.97066 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 7.20 37.16 0.27 -0.75 16 2 C -0.06 -0.37 0.94 -153.39 -0.14 -0.52 16 3 C -0.14 -0.77 8.15 37.16 0.30 -0.47 16 4 C -0.12 -0.66 5.90 -25.08 -0.15 -0.81 16 5 C -0.12 -0.69 6.91 -24.74 -0.17 -0.86 16 6 C -0.12 -0.74 6.08 -25.07 -0.15 -0.89 16 7 C -0.10 -0.63 2.62 -89.50 -0.23 -0.86 16 8 H 0.08 0.50 7.67 -51.93 -0.40 0.10 16 9 C 0.12 1.12 3.78 -4.05 -0.02 1.11 16 10 N -0.74 -7.18 5.40 -60.30 -0.33 -7.51 16 11 C 0.51 6.95 7.83 -10.98 -0.09 6.87 16 12 O -0.54 -9.66 15.98 5.56 0.09 -9.57 16 13 C -0.14 -1.79 5.70 -27.88 -0.16 -1.95 16 14 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 15 C -0.10 -2.05 5.15 -26.74 -0.14 -2.19 16 16 C -0.02 -0.39 4.04 -27.89 -0.11 -0.51 16 17 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 18 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 19 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.91 -28.59 13.96 55.43 0.77 -27.82 16 21 Si 0.88 22.58 27.47 -169.99 -4.67 17.91 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 25 H 0.06 0.46 6.62 -51.93 -0.34 0.11 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.46 6.85 -51.93 -0.36 0.10 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.41 7.84 -51.93 -0.41 0.00 16 32 H 0.07 0.34 7.84 -51.93 -0.41 -0.06 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.50 7.76 -51.93 -0.40 0.10 16 37 H 0.07 0.70 6.91 -51.93 -0.36 0.34 16 38 H 0.07 0.70 6.42 -51.93 -0.33 0.37 16 39 H 0.40 2.79 8.36 -40.82 -0.34 2.45 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 43 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 47 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -33.76 370.58 -9.08 -42.85 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -9.19 Total: -3.92 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -1.34 Total: -17.51 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.45 Total: -35.33 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.76 -9.08 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590528348.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.801 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds