Wall clock time and date at job start Tue Mar 31 2020 05:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48503 * 109.46819 * 239.99868 * 3 2 1 5 5 H 1.48494 * 109.47291 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47196 * 120.00373 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99377 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46965 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46965 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47300 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00109 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00137 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99873 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46684 * 180.02562 * 16 15 13 18 18 C 1.54240 * 108.90072 * 296.39749 * 17 16 15 19 19 C 1.50550 * 108.48685 * 159.18334 * 18 17 16 20 20 C 1.54068 * 112.41936 * 94.26475 * 19 18 17 21 21 C 1.54067 * 112.81462 * 318.28106 * 20 19 18 22 22 C 1.50473 * 112.49739 * 318.28520 * 21 20 19 23 23 C 1.45550 * 108.89334 * 173.60442 * 17 16 15 24 24 H 0.97005 * 120.00032 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 26 26 H 1.09000 * 109.46978 * 300.00013 * 9 7 2 27 27 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 28 28 H 1.09004 * 109.47059 * 300.00503 * 10 9 7 29 29 H 1.09000 * 109.47058 * 60.00901 * 11 10 9 30 30 H 1.08987 * 109.47609 * 300.00084 * 11 10 9 31 31 H 1.09004 * 109.46930 * 60.00393 * 12 11 10 32 32 H 1.09000 * 109.47312 * 300.00337 * 12 11 10 33 33 H 0.96995 * 120.00018 * 0.27749 * 15 13 12 34 34 H 1.09000 * 109.47212 * 300.00355 * 16 15 13 35 35 H 1.09001 * 109.46577 * 60.00430 * 16 15 13 36 36 H 1.09002 * 108.87445 * 55.00385 * 17 16 15 37 37 H 1.09007 * 109.62244 * 278.97896 * 18 17 16 38 38 H 1.08996 * 109.62464 * 39.55193 * 18 17 16 39 39 H 1.09007 * 108.92182 * 333.50729 * 19 18 17 40 40 H 1.09002 * 108.91760 * 215.02307 * 19 18 17 41 41 H 1.08996 * 108.81464 * 197.42057 * 20 19 18 42 42 H 1.09005 * 108.72003 * 79.07885 * 20 19 18 43 43 H 1.08998 * 108.87757 * 197.50272 * 21 20 19 44 44 H 1.09007 * 108.87585 * 79.06185 * 21 20 19 45 45 H 1.09001 * 109.62691 * 334.44431 * 22 21 20 46 46 H 1.08997 * 109.62895 * 213.86849 * 22 21 20 47 47 H 1.09000 * 108.89722 * 303.44679 * 23 17 16 48 48 H 1.08999 * 108.89188 * 62.03311 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0005 13 6 1.7210 -7.4551 0.0005 14 8 0.5082 -7.4551 0.0005 15 7 2.3949 -8.6223 -0.0005 16 6 1.6623 -9.8910 0.0001 17 6 2.6566 -11.0539 -0.0007 18 6 3.4734 -11.0120 -1.3084 19 6 4.7466 -11.7883 -1.1011 20 6 4.6236 -13.2529 -1.5631 21 6 3.2794 -13.8933 -1.1672 22 6 2.8562 -13.5270 0.2296 23 6 1.9229 -12.3015 0.1533 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.8534 -5.0451 -0.8887 30 1 0.8539 -5.0446 0.8913 31 1 3.1017 -6.0922 0.8901 32 1 3.1005 -6.0923 -0.8899 33 1 3.3648 -8.6223 0.0028 34 1 1.0366 -9.9490 0.8907 35 1 1.0347 -9.9485 -0.8893 36 1 3.3360 -10.9375 0.8437 37 1 2.8954 -11.4622 -2.1156 38 1 3.7123 -9.9783 -1.5579 39 1 5.0013 -11.7729 -0.0414 40 1 5.5486 -11.3079 -1.6615 41 1 5.4331 -13.8311 -1.1177 42 1 4.7234 -13.2871 -2.6480 43 1 3.3717 -14.9773 -1.2349 44 1 2.5116 -13.5624 -1.8666 45 1 3.7351 -13.2813 0.8258 46 1 2.3253 -14.3640 0.6827 47 1 1.3300 -12.2519 1.0665 48 1 1.2515 -12.4233 -0.6968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590774460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:15 Heat of formation + Delta-G solvation = -94.516333 kcal Electronic energy + Delta-G solvation = -21631.331614 eV Core-core repulsion = 18490.824874 eV Total energy + Delta-G solvation = -3140.506740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.16331 -39.05838 -35.41092 -34.74924 -32.90652 -32.57276 -32.22619 -29.75914 -27.24244 -25.51761 -25.03466 -23.36505 -22.01340 -20.92026 -20.06587 -19.89887 -19.64330 -16.95157 -16.25797 -16.10258 -15.94452 -15.73613 -15.19623 -14.93977 -14.43883 -14.16301 -13.98368 -13.44758 -13.40147 -13.26243 -12.94672 -12.55810 -12.54010 -12.32222 -11.95575 -11.64614 -11.57703 -11.15340 -11.00364 -10.98176 -10.93916 -10.76927 -10.74071 -10.53877 -10.51119 -10.48705 -10.37110 -9.75153 -9.57550 -9.18471 -9.09322 -8.95805 -8.27727 -5.92571 -3.95086 2.79557 3.20146 3.36994 3.41247 3.43579 4.12401 4.20771 4.39262 4.51005 4.66752 4.68177 4.76882 4.86759 4.91514 4.96185 5.02377 5.26905 5.33227 5.36947 5.37927 5.41980 5.43876 5.53764 5.55171 5.63808 5.67829 5.77642 5.80460 5.81180 5.83773 5.89907 5.94467 6.05000 6.06486 6.18250 6.34744 6.40182 6.59250 6.88201 7.06297 7.23620 7.49989 7.76763 7.93449 8.09026 8.33388 8.50749 9.12431 9.68239 11.18687 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.046147 B = 0.002124 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.611469 B =13179.967047 C =13600.866632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.510 3.490 14 O -0.537 6.537 15 N -0.738 5.738 16 C 0.120 3.880 17 C -0.095 4.095 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.114 4.114 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.399 0.601 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.946 -30.122 -1.149 31.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.297 3.703 14 O -0.413 6.413 15 N -0.391 5.391 16 C -0.004 4.004 17 C -0.113 4.113 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.152 4.152 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.887 -30.000 -1.154 31.310 hybrid contribution 0.939 0.890 -0.007 1.294 sum 9.827 -29.110 -1.161 30.746 Atomic orbital electron populations 1.69967 1.06036 1.26590 1.50870 1.25049 0.94855 0.99223 0.95501 0.86664 0.79561 0.83258 0.78526 1.20305 1.21334 1.20300 1.21249 0.92935 0.91221 1.50466 0.92819 1.19095 0.94072 0.91265 0.97309 1.21651 0.99067 0.94043 1.00030 1.21443 0.97030 0.92716 1.02925 1.21792 1.00077 0.92136 1.03887 1.21097 0.88452 0.85640 0.75063 1.90705 1.14292 1.87734 1.48540 1.46134 1.10192 1.05736 1.77083 1.21461 0.94367 0.82294 1.02246 1.20355 0.97521 0.94658 0.98793 1.21458 0.96277 1.00420 0.97125 1.21355 0.97696 0.95076 1.01585 1.21913 0.97239 0.95610 1.00724 1.21357 0.97443 0.99891 0.97084 1.21297 0.99418 0.97391 0.97140 1.20464 0.98334 0.93904 1.02523 0.93007 0.96601 0.96591 0.93509 0.93499 0.91845 0.91839 0.89227 0.89227 0.76690 0.91747 0.91650 0.90740 0.91316 0.91479 0.92034 0.92214 0.92450 0.92398 0.92517 0.92003 0.91584 0.91893 0.91859 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.29 55.43 0.74 -27.05 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 13 C 0.51 7.27 7.83 -10.99 -0.09 7.18 16 14 O -0.54 -10.08 15.98 5.55 0.09 -9.99 16 15 N -0.74 -7.44 5.03 -60.29 -0.30 -7.75 16 16 C 0.12 1.12 4.98 -4.04 -0.02 1.10 16 17 C -0.09 -0.61 1.74 -93.48 -0.16 -0.77 16 18 C -0.12 -0.71 4.88 -27.31 -0.13 -0.84 16 19 C -0.12 -0.65 5.32 -27.40 -0.15 -0.80 16 20 C -0.12 -0.62 5.85 -25.62 -0.15 -0.77 16 21 C -0.12 -0.64 5.31 -27.44 -0.15 -0.78 16 22 C -0.11 -0.61 5.61 -27.35 -0.15 -0.77 16 23 C -0.11 -0.69 4.44 -29.60 -0.13 -0.82 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.10 -51.94 -0.42 0.82 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.40 2.91 7.70 -40.82 -0.31 2.60 16 34 H 0.06 0.67 8.05 -51.93 -0.42 0.26 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.46 7.46 -51.93 -0.39 0.08 16 37 H 0.07 0.46 6.97 -51.93 -0.36 0.10 16 38 H 0.07 0.44 6.81 -51.93 -0.35 0.08 16 39 H 0.06 0.33 6.63 -51.93 -0.34 -0.01 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.35 6.62 -51.92 -0.34 0.01 16 45 H 0.07 0.36 6.98 -51.93 -0.36 -0.01 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.39 8.04 -51.93 -0.42 -0.03 16 48 H 0.06 0.41 7.46 -51.93 -0.39 0.02 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -33.50 368.69 -10.18 -43.69 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -9.15 Total: -4.16 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -2.10 Total: -17.37 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.43 Total: -34.79 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.50 -10.18 -43.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590774460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.826 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds