Wall clock time and date at job start Tue Mar 31 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.47060 * 299.99657 * 3 2 1 5 5 C 1.53006 * 109.47127 * 300.00449 * 4 3 2 6 6 O 1.42896 * 109.46890 * 299.99597 * 5 4 3 7 7 C 1.52997 * 109.47127 * 179.97438 * 5 4 3 8 8 N 1.46899 * 109.47254 * 59.99866 * 7 5 4 9 9 C 1.46904 * 111.00029 * 180.02562 * 8 7 5 10 10 H 1.08998 * 110.01339 * 325.05747 * 9 8 7 11 11 C 1.53876 * 110.03475 * 86.45287 * 9 8 7 12 12 C 1.54261 * 106.60009 * 119.28391 * 11 9 8 13 13 C 1.54891 * 104.19392 * 23.61141 * 12 11 9 14 14 H 1.08994 * 110.75745 * 80.37295 * 13 12 11 15 15 C 1.50707 * 110.75257 * 203.55679 * 13 12 11 16 16 H 1.07999 * 119.99551 * 118.54948 * 15 13 12 17 17 C 1.37873 * 120.00321 * 298.54118 * 15 13 12 18 18 N 1.31513 * 120.00302 * 179.97438 * 17 15 13 19 19 Si 1.86806 * 119.99838 * 0.02562 * 17 15 13 20 20 H 1.48500 * 109.47081 * 89.99700 * 19 17 15 21 21 H 1.48499 * 109.46740 * 209.99575 * 19 17 15 22 22 H 1.48502 * 109.46892 * 329.99705 * 19 17 15 23 23 C 1.54262 * 110.03177 * 203.62012 * 9 8 7 24 24 C 1.52997 * 109.47164 * 59.99836 * 5 4 3 25 25 C 1.52996 * 109.47346 * 239.99542 * 2 1 3 26 26 H 1.09000 * 109.46986 * 60.00203 * 1 2 3 27 27 H 1.08993 * 109.47662 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47075 * 300.00932 * 1 2 3 29 29 H 1.09004 * 109.46733 * 119.99342 * 2 1 3 30 30 H 1.09002 * 109.47398 * 59.99826 * 3 2 1 31 31 H 1.09001 * 109.47194 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 33 33 H 1.08996 * 109.47853 * 180.02562 * 4 3 2 34 34 H 0.96702 * 114.00303 * 300.00518 * 6 5 4 35 35 H 1.09002 * 109.47153 * 179.97438 * 7 5 4 36 36 H 1.09001 * 109.47289 * 299.99953 * 7 5 4 37 37 H 1.00892 * 111.00497 * 56.04347 * 8 7 5 38 38 H 1.09000 * 110.02846 * 238.56902 * 11 9 8 39 39 H 1.09003 * 110.03010 * 359.97438 * 11 9 8 40 40 H 1.09000 * 110.48886 * 142.28632 * 12 11 9 41 41 H 1.08998 * 110.49066 * 264.80081 * 12 11 9 42 42 H 0.97002 * 120.00217 * 180.02562 * 18 17 15 43 43 H 1.09007 * 110.48844 * 335.77852 * 23 9 8 44 44 H 1.08999 * 110.49074 * 98.42536 * 23 9 8 45 45 H 1.09002 * 109.47045 * 180.02562 * 24 5 4 46 46 H 1.09001 * 109.47375 * 59.99966 * 24 5 4 47 47 H 1.08992 * 109.47554 * 180.02562 * 25 2 1 48 48 H 1.09004 * 109.47108 * 300.00289 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 2.0401 1.4423 -2.4985 6 8 3.4691 1.4423 -2.4985 7 6 1.5297 2.1631 -3.7478 8 7 2.0189 3.5483 -3.7482 9 6 1.5469 4.2730 -4.9357 10 1 1.5029 3.5989 -5.7910 11 6 0.1568 4.8758 -4.6674 12 6 0.3023 6.4040 -4.8198 13 6 1.5411 6.5784 -5.7330 14 1 1.2742 6.4283 -6.7790 15 6 2.1654 7.9354 -5.5327 16 1 3.1808 8.0148 -5.1735 17 6 1.4404 9.0753 -5.8081 18 7 1.9850 10.2594 -5.6329 19 14 -0.3161 8.9377 -6.4289 20 1 -1.2495 8.9223 -5.2741 21 1 -0.6255 10.0998 -7.3001 22 1 -0.4694 7.6816 -7.2061 23 6 2.4886 5.4559 -5.2418 24 6 1.5301 -0.0001 -2.4984 25 6 2.0401 -0.7213 -1.2491 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 3.1301 1.4425 -0.0005 32 1 0.4402 2.1637 -1.2494 33 1 1.8938 3.1912 -1.2496 34 1 3.8625 2.3257 -2.4985 35 1 1.8934 1.6495 -4.6377 36 1 0.4397 2.1628 -3.7476 37 1 3.0254 3.5764 -3.6834 38 1 -0.5617 4.4949 -5.3932 39 1 -0.1678 4.6303 -3.6562 40 1 -0.5837 6.8262 -5.2941 41 1 0.4728 6.8697 -3.8492 42 1 1.4748 11.0614 -5.8263 43 1 3.0145 5.7683 -4.3395 44 1 3.1982 5.1861 -6.0240 45 1 1.8938 -0.5142 -3.3882 46 1 0.4400 -0.0001 -2.4984 47 1 3.1300 -0.7217 -1.2489 48 1 1.6767 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591770108.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:25 Heat of formation + Delta-G solvation = -81.120401 kcal Electronic energy + Delta-G solvation = -23376.505883 eV Core-core repulsion = 20236.580034 eV Total energy + Delta-G solvation = -3139.925849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.12933 -37.96888 -36.08809 -34.00614 -32.18421 -31.17141 -30.73759 -28.42221 -28.01822 -26.56546 -24.18626 -23.35295 -22.72795 -20.94546 -19.37766 -19.29039 -18.92651 -16.88904 -16.33102 -16.10419 -15.57252 -15.20460 -14.97020 -14.60458 -14.36562 -14.00260 -13.57318 -13.16606 -12.98665 -12.82062 -12.68147 -12.42982 -12.23399 -12.11743 -11.99823 -11.71808 -11.58162 -11.31929 -11.03615 -10.89622 -10.67599 -10.63936 -10.46237 -10.37790 -10.10106 -10.04679 -9.86826 -9.68093 -9.62248 -9.32489 -8.96912 -8.50894 -8.22897 -6.04117 -4.02415 3.31474 3.39934 3.42042 4.08023 4.22053 4.45154 4.60073 4.65636 4.66815 4.94204 5.01735 5.10345 5.24982 5.25926 5.32407 5.38343 5.43635 5.44267 5.51437 5.61538 5.61682 5.68445 5.72795 5.73500 5.81436 5.87945 5.97615 6.07189 6.10432 6.15890 6.17999 6.30055 6.35874 6.37285 6.40213 6.49900 6.63532 6.68392 6.81745 6.93630 7.12685 7.35406 7.52348 7.60400 7.62723 7.81761 8.56373 8.99640 9.59350 11.09375 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032673 B = 0.003494 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.765245 B = 8011.933007 C = 8141.900628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.112 4.112 4 C -0.136 4.136 5 C 0.140 3.860 6 O -0.560 6.560 7 C 0.031 3.969 8 N -0.678 5.678 9 C 0.083 3.917 10 H 0.036 0.964 11 C -0.112 4.112 12 C -0.127 4.127 13 C 0.016 3.984 14 H 0.029 0.971 15 C -0.508 4.508 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.904 5.904 19 Si 0.884 3.116 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.266 1.266 23 C -0.107 4.107 24 C -0.106 4.106 25 C -0.108 4.108 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.375 0.625 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.334 0.666 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.263 0.737 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -21.579 8.861 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.149 4.149 4 C -0.174 4.174 5 C 0.099 3.901 6 O -0.366 6.366 7 C -0.099 4.099 8 N -0.310 5.310 9 C -0.026 4.026 10 H 0.054 0.946 11 C -0.150 4.150 12 C -0.164 4.164 13 C -0.004 4.004 14 H 0.047 0.953 15 C -0.546 4.546 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.543 5.543 19 Si 0.713 3.287 20 H -0.205 1.205 21 H -0.224 1.224 22 H -0.191 1.191 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.146 4.146 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.223 0.777 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.152 0.848 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.944 -21.808 9.246 23.869 hybrid contribution -0.473 0.326 -1.070 1.215 sum -3.417 -21.481 8.176 23.237 Atomic orbital electron populations 1.21954 0.95629 1.01305 1.02018 1.21097 0.95604 0.96449 0.97893 1.21514 1.01029 0.94762 0.97635 1.22104 1.01388 1.00161 0.93755 1.21192 0.80705 0.94759 0.93433 1.86489 1.19290 1.33719 1.97092 1.22678 1.01027 0.89357 0.96798 1.60694 1.15533 1.12447 1.42350 1.22274 0.96523 0.94751 0.89012 0.94600 1.22182 0.95060 0.97243 1.00538 1.22752 0.99129 0.93120 1.01442 1.20020 0.91485 0.94536 0.94320 0.95297 1.21000 1.01073 0.88202 1.44279 0.90930 1.24993 0.97988 0.95282 0.94894 1.69905 1.37411 0.97529 1.49411 0.86880 0.85695 0.77041 0.79063 1.20460 1.22385 1.19141 1.22467 0.97258 0.94207 1.00557 1.21528 1.00410 0.93729 0.98706 1.21450 1.01394 0.97951 0.93757 0.92022 0.93110 0.92930 0.91706 0.92379 0.91582 0.91241 0.90154 0.77725 0.94949 0.90503 0.84759 0.93568 0.91763 0.94033 0.91421 0.92760 0.91018 0.93240 0.91725 0.90613 0.91186 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.50 37.16 0.32 -0.90 16 2 C -0.09 -0.79 3.19 -90.62 -0.29 -1.08 16 3 C -0.11 -1.06 5.31 -26.73 -0.14 -1.20 16 4 C -0.14 -1.41 4.48 -26.73 -0.12 -1.53 16 5 C 0.14 1.45 0.78 -90.62 -0.07 1.37 16 6 O -0.56 -6.12 11.59 -35.23 -0.41 -6.52 16 7 C 0.03 0.37 4.69 -3.83 -0.02 0.35 16 8 N -0.68 -8.99 5.37 -105.54 -0.57 -9.56 16 9 C 0.08 1.34 3.24 -66.59 -0.22 1.13 16 10 H 0.04 0.57 7.83 -51.93 -0.41 0.16 16 11 C -0.11 -1.94 6.48 -25.61 -0.17 -2.11 16 12 C -0.13 -2.70 5.08 -25.07 -0.13 -2.83 16 13 C 0.02 0.36 2.29 -89.77 -0.21 0.16 16 14 H 0.03 0.69 7.37 -51.93 -0.38 0.31 16 15 C -0.51 -14.18 9.14 -34.44 -0.31 -14.50 16 16 H 0.07 2.19 8.03 -52.49 -0.42 1.77 16 17 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 18 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 19 Si 0.88 22.03 24.46 -169.99 -4.16 17.87 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.27 -6.36 6.48 56.52 0.37 -6.00 16 23 C -0.11 -2.04 5.68 -25.07 -0.14 -2.18 16 24 C -0.11 -1.00 4.67 -26.73 -0.12 -1.13 16 25 C -0.11 -0.97 5.30 -26.73 -0.14 -1.11 16 26 H 0.06 0.52 4.81 -51.93 -0.25 0.27 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.66 7.68 -51.93 -0.40 0.27 16 32 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 33 H 0.08 0.94 7.60 -51.93 -0.39 0.54 16 34 H 0.37 3.46 7.46 45.56 0.34 3.80 16 35 H 0.03 0.40 8.07 -51.93 -0.42 -0.02 16 36 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.33 4.10 6.76 -39.30 -0.27 3.83 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.06 7.92 -51.93 -0.41 0.65 16 40 H 0.04 0.91 4.89 -51.93 -0.25 0.66 16 41 H 0.07 1.52 8.05 -51.93 -0.42 1.10 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.07 1.41 7.88 -51.92 -0.41 1.00 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.66 6.43 -51.93 -0.33 0.33 16 47 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -29.64 346.79 -9.12 -38.76 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -8.13 Total: 4.91 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -1.86 Total: -23.66 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.21 Total: -36.58 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.41 Total: -6.52 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.16 Total: 17.87 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.64 -9.12 -38.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770108.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.360 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds