Wall clock time and date at job start Tue Mar 31 2020 05:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47360 * 2 1 4 4 C 1.53007 * 109.47247 * 120.00205 * 2 1 3 5 5 C 1.53001 * 109.47247 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46505 * 299.99825 * 5 4 2 7 7 C 1.53001 * 109.46505 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47098 * 174.99730 * 7 6 5 9 9 C 1.48566 * 111.00368 * 290.12959 * 8 7 6 10 10 C 1.54373 * 104.59502 * 200.95943 * 9 8 7 11 11 C 1.54261 * 105.06470 * 23.84604 * 10 9 8 12 12 O 1.42893 * 110.32845 * 241.00514 * 11 10 9 13 13 C 1.50706 * 110.32283 * 118.89461 * 11 10 9 14 14 H 1.07995 * 120.00167 * 241.18044 * 13 11 10 15 15 C 1.37879 * 119.99394 * 61.45742 * 13 11 10 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 11 18 18 H 1.48490 * 109.47405 * 60.00219 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 C 1.48561 * 111.00291 * 174.70428 * 8 7 6 22 22 C 1.52999 * 109.47403 * 60.00351 * 6 5 4 23 23 C 1.52997 * 109.46968 * 239.99956 * 2 1 3 24 24 H 1.09005 * 109.46774 * 299.99826 * 1 2 3 25 25 H 1.08997 * 109.47283 * 60.00006 * 1 2 3 26 26 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47752 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47177 * 299.99888 * 3 2 1 29 29 H 1.09001 * 109.47500 * 60.00287 * 3 2 1 30 30 H 1.09000 * 109.47030 * 59.99832 * 4 2 1 31 31 H 1.09007 * 109.46759 * 299.99969 * 4 2 1 32 32 H 1.08997 * 109.47283 * 179.97438 * 5 4 2 33 33 H 1.08993 * 109.46837 * 59.99411 * 5 4 2 34 34 H 1.08993 * 109.47235 * 299.99342 * 6 5 4 35 35 H 1.09001 * 109.47549 * 55.00281 * 7 6 5 36 36 H 1.08995 * 109.47171 * 294.99852 * 7 6 5 37 37 H 1.08993 * 110.41119 * 82.17761 * 9 8 7 38 38 H 1.08995 * 110.50611 * 319.78571 * 9 8 7 39 39 H 1.09007 * 110.32162 * 264.95782 * 10 9 8 40 40 H 1.08997 * 110.41140 * 142.79162 * 10 9 8 41 41 H 0.96701 * 114.00084 * 297.17173 * 12 11 10 42 42 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 43 43 H 1.09002 * 110.40802 * 40.27073 * 21 8 7 44 44 H 1.08993 * 110.41572 * 277.82247 * 21 8 7 45 45 H 1.09000 * 109.47096 * 59.99403 * 22 6 5 46 46 H 1.09001 * 109.47116 * 180.02562 * 22 6 5 47 47 H 1.09006 * 109.46927 * 300.00123 * 23 2 1 48 48 H 1.08997 * 109.47087 * 59.99918 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5701 -0.7219 1.2489 6 6 4.0794 -1.4435 -0.0004 7 6 5.6094 -1.4435 -0.0010 8 7 6.0986 -2.2383 -1.1355 9 6 5.8262 -3.6842 -0.9295 10 6 6.8238 -4.4046 -1.8616 11 6 7.9763 -3.4003 -2.0684 12 8 8.0982 -3.0625 -3.4514 13 6 9.2709 -3.9762 -1.5550 14 1 9.8015 -3.4827 -0.7542 15 6 9.7808 -5.1300 -2.1116 16 7 9.1377 -5.7276 -3.0908 17 14 11.3851 -5.8442 -1.4748 18 1 11.2429 -6.1735 -0.0339 19 1 11.7142 -7.0769 -2.2346 20 1 12.4739 -4.8497 -1.6502 21 6 7.5781 -2.1574 -1.2437 22 6 3.5694 -0.7223 -1.2496 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 -1.7490 1.2492 31 1 1.6767 -0.2074 2.1393 32 1 3.9334 -1.2353 2.1391 33 1 3.9337 0.3056 1.2486 34 1 3.7158 -2.4710 -0.0001 35 1 5.9732 -1.8776 0.9303 36 1 5.9727 -0.4199 -0.0911 37 1 4.8011 -3.9220 -1.2133 38 1 6.0068 -3.9627 0.1087 39 1 6.3500 -4.6385 -2.8150 40 1 7.1948 -5.3149 -1.3905 41 1 8.3247 -3.8107 -4.0206 42 1 9.4966 -6.5391 -3.4826 43 1 8.0342 -2.1955 -0.2544 44 1 7.8719 -1.2459 -1.7640 45 1 3.9332 0.3053 -1.2498 46 1 3.9319 -1.2367 -2.1396 47 1 1.6766 -1.7490 -1.2492 48 1 1.6766 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152183.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:30 Heat of formation + Delta-G solvation = -80.669945 kcal Electronic energy + Delta-G solvation = -23553.852613 eV Core-core repulsion = 20413.946297 eV Total energy + Delta-G solvation = -3139.906315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.74261 -38.12537 -35.21591 -33.24909 -32.08014 -30.72305 -29.73312 -27.93243 -27.41859 -26.91376 -24.55757 -23.01250 -22.59054 -20.86772 -19.70840 -19.26423 -18.31280 -16.94669 -15.38689 -15.31153 -14.99721 -14.82706 -14.57930 -14.08971 -13.99213 -13.66600 -13.37464 -13.16194 -12.67065 -12.56501 -12.28643 -12.17562 -11.90637 -11.84824 -11.62810 -11.41916 -11.27961 -11.18436 -11.02602 -10.87051 -10.80533 -10.62784 -10.50549 -10.45421 -10.27274 -9.98094 -9.87555 -9.85108 -9.70878 -9.04961 -8.55512 -8.06275 -7.69192 -6.17804 -4.26753 3.24611 3.29636 3.32449 4.30921 4.56198 4.62114 4.74275 4.78498 5.07510 5.10257 5.27431 5.31784 5.38757 5.45919 5.55680 5.58601 5.66257 5.67348 5.74135 5.82705 5.83630 5.85315 5.93988 5.96010 5.99912 6.05954 6.10049 6.12226 6.20623 6.25071 6.26406 6.28467 6.37913 6.47499 6.52548 6.66494 6.70673 6.75781 7.02080 7.10789 7.44475 7.56743 7.61294 7.79364 7.85315 8.25316 8.76176 9.42079 9.61589 10.88557 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040122 B = 0.003512 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.696077 B = 7970.204644 C = 8104.916419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.105 4.105 5 C -0.116 4.116 6 C -0.078 4.078 7 C 0.048 3.952 8 N -0.506 5.506 9 C 0.034 3.966 10 C -0.119 4.119 11 C 0.254 3.746 12 O -0.586 6.586 13 C -0.539 4.539 14 H 0.058 0.942 15 C 0.070 3.930 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.051 3.949 22 C -0.106 4.106 23 C -0.108 4.108 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.030 0.970 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.378 0.622 42 H 0.267 0.733 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.279 8.911 6.830 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 C -0.201 4.201 4 C -0.142 4.142 5 C -0.154 4.154 6 C -0.097 4.097 7 C -0.081 4.081 8 N -0.230 5.230 9 C -0.094 4.094 10 C -0.158 4.158 11 C 0.213 3.787 12 O -0.394 6.394 13 C -0.577 4.577 14 H 0.076 0.924 15 C -0.132 4.132 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.077 4.077 22 C -0.144 4.144 23 C -0.146 4.146 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.228 0.772 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.689 9.569 6.461 18.684 hybrid contribution 1.400 -1.403 0.980 2.211 sum -13.289 8.166 7.441 17.282 Atomic orbital electron populations 1.21870 0.95156 1.01485 1.01312 1.20543 0.94674 0.95602 0.95768 1.21961 1.01831 0.95268 1.01020 1.21555 0.95703 1.00158 0.96812 1.21616 0.95226 1.00819 0.97759 1.21086 0.94462 0.99577 0.94540 1.22292 0.94755 0.98526 0.92512 1.65366 1.12872 1.07009 1.37735 1.23118 0.99507 0.88694 0.98104 1.22830 0.95644 0.99487 0.97840 1.19199 0.91689 0.87831 0.79939 1.86130 1.93206 1.40431 1.19677 1.21708 1.07466 1.09090 1.19446 0.92358 1.24999 0.97354 0.96232 0.94660 1.69701 1.38991 1.19782 1.24886 0.86562 0.83607 0.78365 0.78906 1.20231 1.21137 1.20098 1.23045 0.85994 1.00289 0.98340 1.21488 0.93771 1.00427 0.98677 1.21611 0.96619 0.99930 0.96424 0.93043 0.92865 0.92859 0.91739 0.93041 0.93257 0.92209 0.92477 0.92461 0.91812 0.91456 0.95401 0.91589 0.92014 0.95155 0.92814 0.91270 0.77201 0.92301 0.93973 0.91158 0.92322 0.90457 0.92325 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.47 37.16 0.31 -0.90 16 2 C -0.07 -0.64 0.77 -154.51 -0.12 -0.76 16 3 C -0.14 -1.35 7.78 37.15 0.29 -1.06 16 4 C -0.10 -1.04 4.73 -26.73 -0.13 -1.17 16 5 C -0.12 -1.29 4.93 -26.73 -0.13 -1.42 16 6 C -0.08 -1.03 2.19 -90.62 -0.20 -1.23 16 7 C 0.05 0.76 4.20 -3.82 -0.02 0.74 16 8 N -0.51 -9.83 4.82 -229.98 -1.11 -10.94 16 9 C 0.03 0.67 5.74 -2.18 -0.01 0.66 16 10 C -0.12 -2.82 5.56 -25.35 -0.14 -2.96 16 11 C 0.25 6.43 1.06 -90.38 -0.10 6.33 16 12 O -0.59 -15.77 12.95 -35.23 -0.46 -16.23 16 13 C -0.54 -14.61 8.08 -34.44 -0.28 -14.89 16 14 H 0.06 1.57 7.58 -52.49 -0.40 1.17 16 15 C 0.07 1.86 5.01 -17.82 -0.09 1.77 16 16 N -0.89 -24.11 10.80 55.43 0.60 -23.51 16 17 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 C 0.05 1.13 5.76 -2.18 -0.01 1.12 16 22 C -0.11 -1.39 4.81 -26.76 -0.13 -1.52 16 23 C -0.11 -1.21 4.73 -26.76 -0.13 -1.33 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.65 4.81 -51.93 -0.25 0.40 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 34 H 0.07 0.96 7.05 -51.93 -0.37 0.60 16 35 H 0.03 0.45 7.88 -51.93 -0.41 0.04 16 36 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 37 H 0.06 1.13 7.64 -51.93 -0.40 0.73 16 38 H 0.03 0.59 7.82 -51.93 -0.41 0.18 16 39 H 0.05 1.31 7.98 -51.93 -0.41 0.90 16 40 H 0.07 1.75 7.23 -51.93 -0.38 1.38 16 41 H 0.38 10.27 7.30 45.56 0.33 10.60 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.04 0.92 7.56 -51.93 -0.39 0.53 16 44 H 0.07 1.58 8.08 -51.93 -0.42 1.16 16 45 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 46 H 0.08 1.20 7.75 -51.93 -0.40 0.80 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -26.98 352.66 -9.90 -36.87 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -8.35 Total: 9.36 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -0.87 Total: -16.63 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.51 Total: -34.45 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.46 Total: -16.23 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -26.98 -9.90 -36.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152183.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.797 kcal (2) G-P(sol) polarization free energy of solvation -26.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds