Wall clock time and date at job start Tue Mar 31 2020 05:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47360 * 2 1 4 4 C 1.53007 * 109.47247 * 120.00205 * 2 1 3 5 5 C 1.53001 * 109.47247 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46505 * 299.99825 * 5 4 2 7 7 C 1.53001 * 109.46505 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47098 * 174.99730 * 7 6 5 9 9 C 1.48566 * 111.00368 * 290.12959 * 8 7 6 10 10 C 1.54373 * 104.59502 * 200.95943 * 9 8 7 11 11 C 1.54261 * 105.06470 * 23.84604 * 10 9 8 12 12 O 1.42893 * 110.32845 * 241.00514 * 11 10 9 13 13 C 1.50706 * 110.32283 * 118.89461 * 11 10 9 14 14 H 1.07995 * 120.00167 * 241.18044 * 13 11 10 15 15 C 1.37879 * 119.99394 * 61.45742 * 13 11 10 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 11 18 18 H 1.48490 * 109.47405 * 60.00219 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 C 1.48561 * 111.00291 * 174.70428 * 8 7 6 22 22 C 1.52999 * 109.47403 * 60.00351 * 6 5 4 23 23 C 1.52997 * 109.46968 * 239.99956 * 2 1 3 24 24 H 1.09005 * 109.46774 * 299.99826 * 1 2 3 25 25 H 1.08997 * 109.47283 * 60.00006 * 1 2 3 26 26 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47752 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47177 * 299.99888 * 3 2 1 29 29 H 1.09001 * 109.47500 * 60.00287 * 3 2 1 30 30 H 1.09000 * 109.47030 * 59.99832 * 4 2 1 31 31 H 1.09007 * 109.46759 * 299.99969 * 4 2 1 32 32 H 1.08997 * 109.47283 * 179.97438 * 5 4 2 33 33 H 1.08993 * 109.46837 * 59.99411 * 5 4 2 34 34 H 1.08993 * 109.47235 * 299.99342 * 6 5 4 35 35 H 1.09001 * 109.47549 * 55.00281 * 7 6 5 36 36 H 1.08995 * 109.47171 * 294.99852 * 7 6 5 37 37 H 1.08993 * 110.41119 * 82.17761 * 9 8 7 38 38 H 1.08995 * 110.50611 * 319.78571 * 9 8 7 39 39 H 1.09007 * 110.32162 * 264.95782 * 10 9 8 40 40 H 1.08997 * 110.41140 * 142.79162 * 10 9 8 41 41 H 0.96701 * 114.00084 * 297.17173 * 12 11 10 42 42 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 43 43 H 1.09002 * 110.40802 * 40.27073 * 21 8 7 44 44 H 1.08993 * 110.41572 * 277.82247 * 21 8 7 45 45 H 1.09000 * 109.47096 * 59.99403 * 22 6 5 46 46 H 1.09001 * 109.47116 * 180.02562 * 22 6 5 47 47 H 1.09006 * 109.46927 * 300.00123 * 23 2 1 48 48 H 1.08997 * 109.47087 * 59.99918 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5701 -0.7219 1.2489 6 6 4.0794 -1.4435 -0.0004 7 6 5.6094 -1.4435 -0.0010 8 7 6.0986 -2.2383 -1.1355 9 6 5.8262 -3.6842 -0.9295 10 6 6.8238 -4.4046 -1.8616 11 6 7.9763 -3.4003 -2.0684 12 8 8.0982 -3.0625 -3.4514 13 6 9.2709 -3.9762 -1.5550 14 1 9.8015 -3.4827 -0.7542 15 6 9.7808 -5.1300 -2.1116 16 7 9.1377 -5.7276 -3.0908 17 14 11.3851 -5.8442 -1.4748 18 1 11.2429 -6.1735 -0.0339 19 1 11.7142 -7.0769 -2.2346 20 1 12.4739 -4.8497 -1.6502 21 6 7.5781 -2.1574 -1.2437 22 6 3.5694 -0.7223 -1.2496 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 -1.7490 1.2492 31 1 1.6767 -0.2074 2.1393 32 1 3.9334 -1.2353 2.1391 33 1 3.9337 0.3056 1.2486 34 1 3.7158 -2.4710 -0.0001 35 1 5.9732 -1.8776 0.9303 36 1 5.9727 -0.4199 -0.0911 37 1 4.8011 -3.9220 -1.2133 38 1 6.0068 -3.9627 0.1087 39 1 6.3500 -4.6385 -2.8150 40 1 7.1948 -5.3149 -1.3905 41 1 8.3247 -3.8107 -4.0206 42 1 9.4966 -6.5391 -3.4826 43 1 8.0342 -2.1955 -0.2544 44 1 7.8719 -1.2459 -1.7640 45 1 3.9332 0.3053 -1.2498 46 1 3.9319 -1.2367 -2.1396 47 1 1.6766 -1.7490 -1.2492 48 1 1.6766 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152183.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:30 Heat of formation + Delta-G solvation = -96.474721 kcal Electronic energy + Delta-G solvation = -23554.537959 eV Core-core repulsion = 20413.946297 eV Total energy + Delta-G solvation = -3140.591662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79382 -39.72119 -36.87573 -34.53769 -34.17204 -31.64362 -31.28171 -29.74574 -28.24267 -28.12306 -26.28837 -24.33748 -23.54292 -22.25130 -21.33665 -20.81947 -19.20028 -18.98735 -17.16684 -16.86765 -16.26722 -16.09308 -15.71493 -15.60012 -15.10086 -14.98294 -14.75940 -14.39553 -14.27320 -13.89961 -13.68080 -13.25609 -13.19079 -13.06854 -12.90071 -12.73592 -12.69663 -12.55826 -12.44305 -12.32248 -12.16743 -12.05550 -11.97428 -11.77946 -11.70745 -11.48931 -11.09353 -10.94709 -10.79672 -10.70825 -10.57965 -10.10462 -9.28398 -8.21757 -6.38810 1.40239 1.41520 1.49194 2.37320 3.02862 3.17053 3.71363 3.81967 3.91013 3.99045 4.09466 4.11346 4.26910 4.34510 4.40656 4.51342 4.55656 4.56488 4.65465 4.68444 4.73344 4.77176 4.83595 4.88055 4.91120 4.93316 5.03183 5.06788 5.14857 5.16883 5.18262 5.22202 5.27601 5.29059 5.35329 5.36479 5.48393 5.54456 5.57125 5.58849 5.68717 5.72844 5.77639 5.87446 6.23035 6.31114 6.68108 7.33134 7.48364 8.83132 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040122 B = 0.003512 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.696077 B = 7970.204644 C = 8104.916419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.143 4.143 4 C -0.102 4.102 5 C -0.111 4.111 6 C -0.071 4.071 7 C 0.048 3.952 8 N -0.508 5.508 9 C 0.045 3.955 10 C -0.111 4.111 11 C 0.236 3.764 12 O -0.596 6.596 13 C -0.565 4.565 14 H 0.053 0.947 15 C 0.029 3.971 16 N -0.910 5.910 17 Si 0.959 3.041 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.275 1.275 21 C 0.058 3.942 22 C -0.102 4.102 23 C -0.105 4.105 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.046 0.954 41 H 0.372 0.628 42 H 0.269 0.731 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.305 9.620 8.347 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.064 4.064 3 C -0.200 4.200 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.089 4.089 7 C -0.080 4.080 8 N -0.232 5.232 9 C -0.083 4.083 10 C -0.150 4.150 11 C 0.196 3.804 12 O -0.404 6.404 13 C -0.603 4.603 14 H 0.071 0.929 15 C -0.172 4.172 16 N -0.550 5.550 17 Si 0.785 3.215 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.200 1.200 21 C -0.070 4.070 22 C -0.139 4.139 23 C -0.143 4.143 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.221 0.779 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.731 10.288 7.987 20.423 hybrid contribution 1.720 -1.611 0.471 2.403 sum -14.011 8.677 8.458 18.524 Atomic orbital electron populations 1.21841 0.94039 1.01715 1.01987 1.20532 0.95549 0.95580 0.94746 1.21947 1.01276 0.95054 1.01702 1.21547 0.94618 1.00315 0.97499 1.21572 0.96167 1.00764 0.96401 1.21027 0.92446 0.99533 0.95942 1.22411 0.96492 0.98062 0.91074 1.65352 1.10866 1.07026 1.39961 1.23002 0.99267 0.88547 0.97465 1.22621 0.96005 0.98643 0.97708 1.19491 0.91870 0.89693 0.79313 1.86123 1.93268 1.40397 1.20634 1.21966 1.08581 1.09864 1.19923 0.92888 1.25704 1.00279 0.96396 0.94792 1.69790 1.40036 1.19859 1.25303 0.85597 0.79735 0.77649 0.78540 1.19653 1.20494 1.19998 1.22876 0.87936 0.98514 0.97648 1.21407 0.95258 0.99992 0.97271 1.21577 0.95033 1.00046 0.97609 0.92006 0.92599 0.92880 0.92559 0.92873 0.92131 0.92433 0.90972 0.92077 0.91231 0.92324 0.95154 0.90957 0.90205 0.94410 0.94360 0.93507 0.77861 0.92131 0.93831 0.91803 0.92140 0.93347 0.92770 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.47 71.98 0.61 -1.41 16 2 C -0.06 -1.09 0.77 -52.18 -0.04 -1.13 16 3 C -0.14 -2.32 7.78 71.98 0.56 -1.76 16 4 C -0.10 -1.76 4.73 30.60 0.14 -1.61 16 5 C -0.11 -2.20 4.93 30.60 0.15 -2.05 16 6 C -0.07 -1.77 2.19 -10.79 -0.02 -1.80 16 7 C 0.05 1.45 4.20 86.30 0.36 1.82 16 8 N -0.51 -19.54 4.82 -881.51 -4.25 -23.79 16 9 C 0.05 1.77 5.74 86.45 0.50 2.27 16 10 C -0.11 -5.35 5.56 31.49 0.18 -5.18 16 11 C 0.24 12.19 1.06 -10.64 -0.01 12.17 16 12 O -0.60 -32.92 12.95 -148.98 -1.93 -34.85 16 13 C -0.57 -31.08 8.08 25.60 0.21 -30.87 16 14 H 0.05 2.89 7.58 -2.91 -0.02 2.87 16 15 C 0.03 1.55 5.01 84.66 0.42 1.98 16 16 N -0.91 -49.72 10.80 21.45 0.23 -49.48 16 17 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 C 0.06 2.60 5.76 86.45 0.50 3.10 16 22 C -0.10 -2.57 4.81 30.58 0.15 -2.42 16 23 C -0.11 -2.19 4.73 30.58 0.14 -2.05 16 24 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 1.01 4.81 -2.39 -0.01 0.99 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.32 6.43 -2.39 -0.02 1.30 16 34 H 0.06 1.59 7.05 -2.39 -0.02 1.57 16 35 H 0.03 0.92 7.88 -2.39 -0.02 0.90 16 36 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 37 H 0.08 2.85 7.64 -2.39 -0.02 2.84 16 38 H 0.04 1.43 7.82 -2.39 -0.02 1.41 16 39 H 0.04 1.91 7.98 -2.38 -0.02 1.89 16 40 H 0.05 2.42 7.23 -2.39 -0.02 2.40 16 41 H 0.37 20.91 7.30 -74.06 -0.54 20.37 16 42 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 43 H 0.04 1.91 7.56 -2.39 -0.02 1.89 16 44 H 0.06 2.90 8.08 -2.39 -0.02 2.88 16 45 H 0.06 1.49 6.43 -2.39 -0.02 1.48 16 46 H 0.05 1.50 7.75 -2.39 -0.02 1.48 16 47 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -57.41 352.66 0.29 -57.12 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.37 Total: 35.33 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 3.84 Total: -28.95 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -4.02 Total: -73.28 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.93 Total: -34.85 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -57.41 0.29 -57.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152183.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.350 kcal (2) G-P(sol) polarization free energy of solvation -57.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds