Wall clock time and date at job start Tue Mar 31 2020 05:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 C 1.52997 * 109.47457 * 120.00135 * 2 1 3 5 5 C 1.53002 * 109.46817 * 60.00169 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 9 9 C 1.52992 * 109.47482 * 180.02562 * 7 6 5 10 10 N 1.46910 * 109.47127 * 65.00091 * 9 7 6 11 11 C 1.48532 * 110.99873 * 52.60188 * 10 9 7 12 12 C 1.54938 * 103.22479 * 159.72173 * 11 10 9 13 13 C 1.54594 * 102.92095 * 322.58967 * 12 11 10 14 14 O 1.42906 * 110.30858 * 263.03837 * 13 12 11 15 15 C 1.50707 * 110.30825 * 140.87399 * 13 12 11 16 16 H 1.07994 * 119.99980 * 244.28168 * 15 13 12 17 17 C 1.37873 * 119.99870 * 64.28167 * 15 13 12 18 18 N 1.31516 * 120.00132 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99919 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47379 * 59.99682 * 19 17 15 21 21 H 1.48503 * 109.47585 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47043 * 299.99750 * 19 17 15 23 23 C 1.47898 * 110.99803 * 170.00311 * 10 9 7 24 24 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 25 25 H 1.09004 * 109.46976 * 299.99579 * 1 2 3 26 26 H 1.09000 * 109.47380 * 59.99705 * 1 2 3 27 27 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47067 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47312 * 300.00337 * 3 2 1 30 30 H 1.09004 * 109.46930 * 60.00393 * 3 2 1 31 31 H 1.08993 * 109.47194 * 299.99651 * 4 2 1 32 32 H 1.09002 * 109.46695 * 179.97438 * 4 2 1 33 33 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 34 34 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 36 36 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 37 37 H 1.08996 * 109.47729 * 184.99759 * 9 7 6 38 38 H 1.09001 * 109.47563 * 305.00337 * 9 7 6 39 39 H 1.08993 * 110.66887 * 278.16220 * 11 10 9 40 40 H 1.09004 * 110.66590 * 41.29335 * 11 10 9 41 41 H 1.08998 * 110.72252 * 204.23122 * 12 11 10 42 42 H 1.09002 * 110.87335 * 81.01753 * 12 11 10 43 43 H 0.96698 * 113.99785 * 295.72009 * 14 13 12 44 44 H 0.97002 * 119.99773 * 180.02562 * 18 17 15 45 45 H 1.08993 * 109.92249 * 333.50307 * 23 10 9 46 46 H 1.08998 * 109.91789 * 94.60813 * 23 10 9 47 47 H 1.09000 * 109.47486 * 180.02562 * 24 7 6 48 48 H 1.09002 * 109.46716 * 60.00091 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2491 6 6 2.0401 -2.8850 -0.0002 7 6 1.5300 -2.1637 -1.2494 8 1 0.4400 -2.1637 -1.2493 9 6 2.0394 -2.8851 -2.4986 10 7 1.4532 -4.2308 -2.5603 11 6 -0.0262 -4.1728 -2.4419 12 6 -0.4831 -5.5271 -3.0401 13 6 0.5054 -5.7394 -4.2097 14 8 -0.0806 -5.3066 -5.4391 15 6 0.9039 -7.1899 -4.3010 16 1 1.9304 -7.4796 -4.1317 17 6 -0.0421 -8.1471 -4.6007 18 7 -1.2921 -7.7943 -4.8073 19 14 0.4517 -9.9451 -4.7131 20 1 1.0097 -10.3877 -3.4101 21 1 -0.7401 -10.7660 -5.0462 22 1 1.4784 -10.1111 -5.7732 23 6 1.7287 -4.8696 -3.8655 24 6 2.0399 -0.7212 -1.2494 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6768 -0.2075 2.1391 32 1 3.1301 -0.7216 1.2488 33 1 0.4402 -2.1638 1.2491 34 1 1.8939 -2.6778 2.1388 35 1 3.1301 -2.8849 -0.0003 36 1 1.6764 -3.9125 -0.0005 37 1 1.7510 -2.3223 -3.3864 38 1 3.1257 -2.9638 -2.4553 39 1 -0.3258 -4.0931 -1.3970 40 1 -0.4263 -3.3414 -3.0224 41 1 -1.5070 -5.4606 -3.4078 42 1 -0.3895 -6.3273 -2.3059 43 1 -0.8561 -5.8186 -5.7068 44 1 -1.9576 -8.4679 -5.0178 45 1 1.8684 -4.1060 -4.6305 46 1 2.6213 -5.4909 -3.7937 47 1 1.6761 -0.2072 -2.1391 48 1 3.1299 -0.7212 -1.2494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522770.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:10 Heat of formation + Delta-G solvation = -79.502150 kcal Electronic energy + Delta-G solvation = -23744.664764 eV Core-core repulsion = 20604.809088 eV Total energy + Delta-G solvation = -3139.855676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.84636 -38.12233 -35.14473 -33.11591 -32.02994 -31.59875 -29.08820 -27.96945 -27.41916 -26.29923 -25.23959 -23.63258 -21.94095 -21.10761 -19.42115 -19.23415 -18.33848 -17.05429 -15.43000 -15.25513 -15.00178 -14.79141 -14.49424 -14.33533 -13.86158 -13.77388 -13.50081 -13.18273 -12.84866 -12.37835 -12.24504 -12.04496 -11.93752 -11.76773 -11.52268 -11.44844 -11.34013 -11.19762 -10.93733 -10.91000 -10.89508 -10.62567 -10.49650 -10.47511 -10.26623 -9.97896 -9.95102 -9.87886 -9.71248 -9.08861 -8.54037 -8.05228 -7.67550 -6.15762 -4.21687 3.28358 3.32518 3.36099 4.35330 4.49802 4.62940 4.70128 4.82225 5.05004 5.13934 5.23324 5.33668 5.39026 5.44014 5.52353 5.59427 5.64646 5.66805 5.73684 5.77848 5.85443 5.88964 5.91866 5.94298 6.02755 6.04462 6.11871 6.14262 6.18221 6.28303 6.30061 6.34580 6.37786 6.43244 6.51679 6.55507 6.66739 6.71446 6.99039 7.13117 7.36029 7.57683 7.73645 7.80546 7.91515 8.21471 8.79648 9.45334 9.57718 10.91834 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034349 B = 0.003770 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.962731 B = 7426.115663 C = 7597.321441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.064 4.064 3 C -0.141 4.141 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.105 4.105 7 C -0.087 4.087 8 H 0.075 0.925 9 C 0.051 3.949 10 N -0.511 5.511 11 C 0.034 3.966 12 C -0.118 4.118 13 C 0.243 3.757 14 O -0.596 6.596 15 C -0.527 4.527 16 H 0.061 0.939 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.054 3.946 24 C -0.102 4.102 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.028 0.972 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.383 0.617 44 H 0.267 0.733 45 H 0.033 0.967 46 H 0.076 0.924 47 H 0.058 0.942 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 14.269 10.192 17.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.064 4.064 3 C -0.198 4.198 4 C -0.144 4.144 5 C -0.160 4.160 6 C -0.143 4.143 7 C -0.105 4.105 8 H 0.093 0.907 9 C -0.078 4.078 10 N -0.235 5.235 11 C -0.094 4.094 12 C -0.157 4.157 13 C 0.203 3.797 14 O -0.406 6.406 15 C -0.566 4.566 16 H 0.079 0.921 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.728 3.272 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.073 4.073 24 C -0.140 4.140 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.234 0.766 44 H 0.077 0.923 45 H 0.052 0.948 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.377 14.331 10.593 18.351 hybrid contribution -0.590 -0.896 -0.769 1.320 sum 3.788 13.435 9.825 17.069 Atomic orbital electron populations 1.21977 0.94798 1.02293 1.01161 1.20510 0.95659 0.94683 0.95536 1.21866 1.00788 0.95721 1.01414 1.21582 1.00297 0.95780 0.96695 1.21614 1.00902 0.95212 0.98277 1.21470 1.00194 0.99866 0.92730 1.21259 1.00839 0.93535 0.94887 0.90721 1.22322 0.99518 0.89854 0.96061 1.64816 1.09848 1.16682 1.32132 1.23250 0.88142 0.98766 0.99236 1.22970 0.99730 0.93654 0.99355 1.19347 0.87474 0.91343 0.81496 1.86085 1.49968 1.62194 1.42319 1.21681 0.95526 0.91552 1.47831 0.92070 1.25009 0.94771 0.99417 0.94168 1.69616 1.01449 1.34477 1.48579 0.86526 0.77920 0.84114 0.78674 1.20109 1.21252 1.20179 1.22855 0.99698 0.96872 0.87898 1.21619 1.00388 0.95245 0.96752 0.93140 0.92949 0.91752 0.92855 0.92825 0.92950 0.92587 0.92251 0.91946 0.92458 0.92565 0.90583 0.95419 0.91503 0.91813 0.95118 0.91939 0.91521 0.76569 0.92348 0.94831 0.90546 0.92337 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.78 37.16 0.29 -1.17 16 2 C -0.06 -0.63 0.77 -154.51 -0.12 -0.75 16 3 C -0.14 -1.22 8.47 37.16 0.31 -0.90 16 4 C -0.11 -1.03 4.73 -26.73 -0.13 -1.16 16 5 C -0.12 -1.33 5.65 -26.73 -0.15 -1.48 16 6 C -0.11 -1.35 5.09 -26.73 -0.14 -1.49 16 7 C -0.09 -1.15 1.60 -90.63 -0.14 -1.29 16 8 H 0.07 1.06 4.80 -51.93 -0.25 0.81 16 9 C 0.05 0.82 4.42 -3.82 -0.02 0.80 16 10 N -0.51 -9.89 4.85 -230.46 -1.12 -11.01 16 11 C 0.03 0.66 5.09 -1.90 -0.01 0.65 16 12 C -0.12 -2.78 5.49 -24.87 -0.14 -2.92 16 13 C 0.24 6.17 0.99 -90.41 -0.09 6.08 16 14 O -0.60 -15.89 12.93 -35.23 -0.46 -16.35 16 15 C -0.53 -14.42 8.10 -34.44 -0.28 -14.69 16 16 H 0.06 1.67 7.35 -52.49 -0.39 1.28 16 17 C 0.07 1.82 5.26 -17.82 -0.09 1.72 16 18 N -0.90 -24.37 10.88 55.43 0.60 -23.77 16 19 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 20 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.05 1.22 6.16 -2.76 -0.02 1.20 16 24 C -0.10 -1.15 4.01 -26.73 -0.11 -1.26 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.70 4.81 -51.93 -0.25 0.45 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.14 7.75 -51.93 -0.40 0.73 16 37 H 0.03 0.46 7.81 -51.93 -0.41 0.06 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.14 7.56 -51.93 -0.39 0.75 16 40 H 0.03 0.61 8.01 -51.93 -0.42 0.19 16 41 H 0.06 1.53 8.05 -51.93 -0.42 1.11 16 42 H 0.07 1.66 7.86 -51.93 -0.41 1.25 16 43 H 0.38 10.36 7.05 45.56 0.32 10.68 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.03 0.75 7.39 -51.93 -0.38 0.37 16 46 H 0.08 1.72 7.40 -51.93 -0.38 1.34 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -27.00 351.42 -9.83 -36.83 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -8.32 Total: 9.69 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -0.82 Total: -16.66 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.51 Total: -34.78 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.46 Total: -16.35 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.00 -9.83 -36.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522770.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.672 kcal (2) G-P(sol) polarization free energy of solvation -26.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds