Wall clock time and date at job start Tue Mar 31 2020 05:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47212 * 2 1 4 4 C 1.53010 * 109.46868 * 240.00426 * 2 1 3 5 5 C 1.53001 * 109.46868 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47100 * 59.99976 * 5 4 2 7 7 C 1.53001 * 109.47423 * 299.99634 * 6 5 4 8 8 H 1.08997 * 109.46840 * 300.00251 * 7 6 5 9 9 C 1.52996 * 109.47073 * 180.02562 * 7 6 5 10 10 N 1.46909 * 109.46929 * 174.67957 * 9 7 6 11 11 C 1.47839 * 110.99547 * 285.29296 * 10 9 7 12 12 C 1.54910 * 104.79488 * 213.63673 * 11 10 9 13 13 C 1.55139 * 101.65292 * 37.06693 * 12 11 10 14 14 O 1.42901 * 110.70721 * 82.73335 * 13 12 11 15 15 C 1.50699 * 110.85933 * 205.89638 * 13 12 11 16 16 H 1.08001 * 119.99921 * 113.68505 * 15 13 12 17 17 C 1.37874 * 120.00095 * 293.68970 * 15 13 12 18 18 N 1.31515 * 119.99735 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00061 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46968 * 90.00257 * 19 17 15 21 21 H 1.48502 * 109.47247 * 209.99581 * 19 17 15 22 22 H 1.48497 * 109.47294 * 329.99788 * 19 17 15 23 23 C 1.47440 * 110.99827 * 164.44641 * 10 9 7 24 24 C 1.52996 * 109.47387 * 120.00654 * 2 1 3 25 25 H 1.08997 * 109.47077 * 59.99327 * 1 2 3 26 26 H 1.09001 * 109.46464 * 299.99972 * 1 2 3 27 27 H 1.08997 * 109.47368 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46649 * 60.00711 * 3 2 1 29 29 H 1.09005 * 109.46836 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47137 * 300.00409 * 3 2 1 31 31 H 1.08997 * 109.46799 * 299.99948 * 4 2 1 32 32 H 1.08997 * 109.47070 * 60.00243 * 4 2 1 33 33 H 1.08997 * 109.47368 * 299.99600 * 5 4 2 34 34 H 1.09001 * 109.46464 * 179.97438 * 5 4 2 35 35 H 1.08998 * 109.47429 * 179.97438 * 6 5 4 36 36 H 1.09008 * 109.47072 * 60.00055 * 6 5 4 37 37 H 1.09005 * 109.47474 * 294.67164 * 9 7 6 38 38 H 1.08998 * 109.47430 * 54.67647 * 9 7 6 39 39 H 1.09007 * 110.37707 * 332.46033 * 11 10 9 40 40 H 1.08993 * 110.37806 * 94.80749 * 11 10 9 41 41 H 1.09006 * 110.99096 * 278.97937 * 12 11 10 42 42 H 1.08990 * 111.03122 * 155.17342 * 12 11 10 43 43 H 0.96699 * 113.99966 * 66.39490 * 14 13 12 44 44 H 0.97012 * 119.99678 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.88727 * 242.65678 * 23 10 9 46 46 H 1.08999 * 109.89343 * 3.68875 * 23 10 9 47 47 H 1.08997 * 109.46787 * 299.99676 * 24 2 1 48 48 H 1.08997 * 109.47380 * 59.99378 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7207 -1.2497 6 6 4.0805 -1.4416 -0.0006 7 6 3.5706 -0.7204 1.2488 8 1 3.9336 0.3073 1.2486 9 6 4.0817 -1.4411 2.4979 10 7 3.6997 -0.6783 3.6940 11 6 4.5396 0.5292 3.8428 12 6 4.6896 0.7205 5.3727 13 6 4.7909 -0.7476 5.8637 14 8 6.1277 -1.2343 5.7291 15 6 4.3227 -0.8696 7.2909 16 1 3.4276 -1.4290 7.5196 17 6 5.0369 -0.2670 8.3046 18 7 6.1271 0.4139 8.0261 19 14 4.4562 -0.4176 10.0737 20 1 5.0674 -1.6202 10.6946 21 1 4.8627 0.7922 10.8329 22 1 2.9768 -0.5445 10.0999 23 6 3.8380 -1.4995 4.9107 24 6 2.0401 -0.7214 1.2491 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6768 1.9563 0.8901 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 -1.7488 -1.2494 32 1 1.6767 -0.2073 -2.1393 33 1 3.9330 0.3071 -1.2499 34 1 3.9332 -1.2348 -2.1395 35 1 5.1705 -1.4416 -0.0010 36 1 3.7175 -2.4695 -0.0004 37 1 3.6432 -2.4378 2.5474 38 1 5.1675 -1.5237 2.4510 39 1 5.5152 0.3720 3.3826 40 1 4.0445 1.3929 3.3991 41 1 3.8124 1.2130 5.7925 42 1 5.5973 1.2751 5.6103 43 1 6.7665 -0.7944 6.3067 44 1 6.6294 0.8382 8.7394 45 1 2.8647 -1.6273 5.3844 46 1 4.2568 -2.4729 4.6556 47 1 1.6768 -0.2076 2.1391 48 1 1.6767 -1.7490 1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:17 Heat of formation + Delta-G solvation = -81.741413 kcal Electronic energy + Delta-G solvation = -23773.490439 eV Core-core repulsion = 20633.537662 eV Total energy + Delta-G solvation = -3139.952778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.72716 -38.11586 -34.97282 -33.27337 -32.04925 -31.51458 -28.92675 -28.03766 -27.29923 -26.30824 -25.26722 -23.78482 -21.80196 -20.68549 -19.60566 -19.38363 -18.28447 -17.08853 -15.32082 -15.14399 -14.98228 -14.86622 -14.60144 -14.15297 -13.97539 -13.72082 -13.33653 -13.01301 -12.77239 -12.44228 -12.19709 -11.96632 -11.84470 -11.79652 -11.55113 -11.40074 -11.27373 -11.23661 -10.96388 -10.89184 -10.85353 -10.65609 -10.48528 -10.40306 -10.27241 -10.02660 -9.91659 -9.81694 -9.64113 -9.19533 -8.58789 -8.06557 -7.54632 -6.19471 -4.26345 3.23881 3.30902 3.34610 4.31977 4.61133 4.68888 4.71725 4.88116 5.07463 5.18823 5.22679 5.39019 5.41741 5.45629 5.61297 5.67926 5.72672 5.74599 5.78081 5.81787 5.88609 5.96687 5.97106 6.05778 6.09138 6.09790 6.17948 6.21368 6.21963 6.26917 6.33791 6.36299 6.44843 6.48149 6.53175 6.60314 6.73143 6.75035 6.99607 7.12190 7.46252 7.51601 7.74732 7.83673 7.90671 8.18026 8.75166 9.41704 9.55309 10.87744 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031601 B = 0.003870 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.841980 B = 7232.689078 C = 7533.185002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.143 4.143 4 C -0.106 4.106 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.080 4.080 8 H 0.071 0.929 9 C 0.057 3.943 10 N -0.526 5.526 11 C 0.044 3.956 12 C -0.131 4.131 13 C 0.237 3.763 14 O -0.593 6.593 15 C -0.531 4.531 16 H 0.062 0.938 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.058 3.942 24 C -0.091 4.091 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.383 0.617 44 H 0.267 0.733 45 H 0.077 0.923 46 H 0.044 0.956 47 H 0.076 0.924 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 0.070 -16.151 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 C -0.200 4.200 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.153 4.153 7 C -0.099 4.099 8 H 0.089 0.911 9 C -0.072 4.072 10 N -0.250 5.250 11 C -0.084 4.084 12 C -0.170 4.170 13 C 0.196 3.804 14 O -0.403 6.403 15 C -0.569 4.569 16 H 0.080 0.920 17 C -0.132 4.132 18 N -0.541 5.541 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.069 4.069 24 C -0.129 4.129 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.234 0.766 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.062 0.938 47 H 0.095 0.905 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.860 -0.078 -16.570 17.934 hybrid contribution 0.895 0.108 1.516 1.764 sum -5.964 0.031 -15.055 16.193 Atomic orbital electron populations 1.21848 0.95079 1.01407 1.01376 1.20572 0.94827 0.95614 0.95674 1.21949 1.01469 0.95407 1.01138 1.21582 0.95521 1.00158 0.97111 1.21549 0.95740 1.00801 0.97527 1.21572 0.99983 0.99343 0.94390 1.21153 0.95920 0.99755 0.93047 0.91080 1.22308 0.97697 0.96617 0.90573 1.63610 1.52491 1.06695 1.02200 1.23051 0.94078 0.92503 0.98761 1.23151 1.01571 1.00847 0.91401 1.19714 0.80307 0.87960 0.92414 1.86073 1.20214 1.66552 1.67476 1.21635 1.10703 1.32959 0.91626 0.91986 1.25007 0.94734 0.93947 0.99534 1.69599 1.16732 1.34521 1.33215 0.86465 0.79195 0.77588 0.83993 1.20542 1.21118 1.19743 1.22825 0.99220 0.95270 0.89608 1.21509 0.94653 0.99852 0.96873 0.93243 0.92568 0.92960 0.92628 0.92115 0.93488 0.92292 0.92646 0.91854 0.92595 0.92406 0.92248 0.91929 0.94993 0.94716 0.92340 0.91942 0.91104 0.76561 0.92334 0.90488 0.93764 0.90487 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.47 37.16 0.31 -1.08 16 2 C -0.07 -0.72 0.77 -154.50 -0.12 -0.84 16 3 C -0.14 -1.54 7.78 37.16 0.29 -1.25 16 4 C -0.11 -1.05 4.73 -26.73 -0.13 -1.17 16 5 C -0.12 -1.19 5.65 -26.73 -0.15 -1.34 16 6 C -0.11 -1.33 5.20 -26.73 -0.14 -1.47 16 7 C -0.08 -1.08 1.97 -90.59 -0.18 -1.25 16 8 H 0.07 1.02 5.85 -51.93 -0.30 0.71 16 9 C 0.06 0.94 4.06 -3.82 -0.02 0.92 16 10 N -0.53 -10.11 4.59 -231.25 -1.06 -11.17 16 11 C 0.04 0.87 5.98 -2.30 -0.01 0.85 16 12 C -0.13 -3.06 5.67 -24.59 -0.14 -3.20 16 13 C 0.24 5.93 0.85 -89.95 -0.08 5.86 16 14 O -0.59 -15.72 13.08 -35.23 -0.46 -16.18 16 15 C -0.53 -14.37 8.22 -34.44 -0.28 -14.66 16 16 H 0.06 1.67 7.53 -52.49 -0.40 1.27 16 17 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 18 N -0.90 -24.25 10.69 55.43 0.59 -23.66 16 19 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.06 1.29 6.19 -2.83 -0.02 1.27 16 24 C -0.09 -1.17 3.91 -26.71 -0.10 -1.28 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 37 H 0.06 1.01 7.86 -51.93 -0.41 0.60 16 38 H 0.03 0.57 7.69 -51.93 -0.40 0.17 16 39 H 0.03 0.70 7.53 -51.93 -0.39 0.31 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.50 8.05 -51.93 -0.42 1.08 16 42 H 0.07 1.75 7.76 -51.93 -0.40 1.35 16 43 H 0.38 10.36 6.98 45.56 0.32 10.68 16 44 H 0.27 6.87 8.31 -40.81 -0.34 6.54 16 45 H 0.08 1.70 7.63 -51.93 -0.40 1.31 16 46 H 0.04 0.98 7.40 -51.93 -0.38 0.60 16 47 H 0.08 1.14 7.76 -51.93 -0.40 0.74 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -26.64 353.26 -9.86 -36.50 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.38 Total: 10.28 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -0.85 Total: -16.88 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.47 Total: -34.83 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.46 Total: -16.18 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -26.64 -9.86 -36.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.243 kcal (2) G-P(sol) polarization free energy of solvation -26.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds