Wall clock time and date at job start Tue Mar 31 2020 05:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48493 * 109.47165 * 274.01780 * 3 2 1 5 5 H 1.48502 * 109.47125 * 34.02036 * 3 2 1 6 6 H 1.48498 * 109.47077 * 154.01567 * 3 2 1 7 7 C 1.37883 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99882 * 6.82819 * 7 2 1 9 9 C 1.50700 * 119.99893 * 186.82428 * 7 2 1 10 10 O 1.42904 * 110.28478 * 58.25138 * 9 7 2 11 11 C 1.54262 * 110.32177 * 180.37233 * 9 7 2 12 12 C 1.54376 * 105.14591 * 118.84699 * 11 9 7 13 13 N 1.48719 * 104.52011 * 336.27171 * 12 11 9 14 14 C 1.46897 * 111.01809 * 158.97198 * 13 12 11 15 15 C 1.53000 * 109.47850 * 74.48652 * 14 13 12 16 16 C 1.52996 * 109.47276 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.46914 * 179.97438 * 16 15 14 18 18 C 1.52992 * 109.47200 * 294.99744 * 17 16 15 19 19 C 1.52998 * 109.47502 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.47105 * 59.99663 * 19 18 17 21 21 C 1.52998 * 109.46946 * 300.00662 * 20 19 18 22 22 C 1.52990 * 109.47640 * 59.99912 * 21 20 19 23 23 C 1.48554 * 104.28802 * 39.35914 * 13 12 11 24 24 H 0.97004 * 119.99578 * 0.02562 * 1 2 3 25 25 H 0.96699 * 114.00360 * 60.67357 * 10 9 7 26 26 H 1.09004 * 110.32202 * 237.79512 * 11 9 7 27 27 H 1.08995 * 110.32372 * 359.90211 * 11 9 7 28 28 H 1.09003 * 110.41498 * 94.97858 * 12 11 9 29 29 H 1.08998 * 110.41338 * 217.41792 * 12 11 9 30 30 H 1.09001 * 109.47072 * 194.49427 * 14 13 12 31 31 H 1.09006 * 109.46743 * 314.48530 * 14 13 12 32 32 H 1.09001 * 109.46673 * 300.00594 * 15 14 13 33 33 H 1.08997 * 109.46938 * 59.99806 * 15 14 13 34 34 H 1.09000 * 109.46656 * 299.99684 * 16 15 14 35 35 H 1.08997 * 109.47652 * 59.99807 * 16 15 14 36 36 H 1.09002 * 109.47126 * 54.99632 * 17 16 15 37 37 H 1.09002 * 109.46990 * 299.99971 * 18 17 16 38 38 H 1.09003 * 109.47155 * 59.99829 * 18 17 16 39 39 H 1.09002 * 109.46864 * 299.99913 * 19 18 17 40 40 H 1.08997 * 109.47257 * 180.02562 * 19 18 17 41 41 H 1.08994 * 109.47071 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.47055 * 60.00367 * 20 19 18 43 43 H 1.08997 * 109.47408 * 299.99536 * 21 20 19 44 44 H 1.09003 * 109.46884 * 180.02562 * 21 20 19 45 45 H 1.09002 * 109.47499 * 179.97438 * 22 21 20 46 46 H 1.09000 * 109.47576 * 59.99895 * 22 21 20 47 47 H 1.08999 * 110.41216 * 201.79652 * 23 13 12 48 48 H 1.09008 * 110.40823 * 79.35766 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4118 2.0954 -1.3966 5 1 1.4918 2.6266 0.7833 6 1 3.5866 1.4170 0.6134 7 6 2.0045 -1.1941 0.0005 8 1 1.4701 -2.1262 -0.1103 9 6 3.5035 -1.1988 0.1556 10 8 3.8768 -0.5634 1.3800 11 6 4.0417 -2.6439 0.1161 12 6 4.9864 -2.6892 -1.1040 13 7 4.5126 -1.5876 -1.9836 14 6 5.5658 -1.1698 -2.9185 15 6 5.7182 -2.2220 -4.0187 16 6 6.8156 -1.7870 -4.9920 17 6 6.9683 -2.8396 -6.0919 18 6 7.4672 -4.1494 -5.4786 19 6 7.6206 -5.2018 -6.5785 20 6 8.6287 -4.7092 -7.6187 21 6 8.1297 -3.3993 -8.2320 22 6 7.9764 -2.3469 -7.1321 23 6 4.1688 -0.4899 -1.0435 24 1 -0.4850 0.8401 -0.0004 25 1 3.5228 -0.9937 2.1703 26 1 4.5923 -2.8679 1.0298 27 1 3.2215 -3.3499 -0.0137 28 1 6.0163 -2.5115 -0.7942 29 1 4.9023 -3.6486 -1.6145 30 1 5.2962 -0.2130 -3.3655 31 1 6.5086 -1.0669 -2.3811 32 1 5.9878 -3.1788 -3.5716 33 1 4.7754 -2.3250 -4.5560 34 1 6.5462 -0.8301 -5.4391 35 1 7.7582 -1.6843 -4.4545 36 1 6.0037 -3.0070 -6.5711 37 1 8.4318 -3.9820 -4.9994 38 1 6.7492 -4.5001 -4.7372 39 1 6.6562 -5.3693 -7.0580 40 1 7.9756 -6.1351 -6.1414 41 1 8.7376 -5.4587 -8.4025 42 1 9.5931 -4.5417 -7.1391 43 1 7.1653 -3.5667 -8.7115 44 1 8.8477 -3.0485 -8.9734 45 1 7.6214 -1.4136 -7.5691 46 1 8.9408 -2.1794 -6.6525 47 1 3.4703 0.2050 -1.5097 48 1 5.0702 0.0330 -0.7238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:47 Heat of formation + Delta-G solvation = -75.769896 kcal Electronic energy + Delta-G solvation = -22890.942381 eV Core-core repulsion = 19751.248548 eV Total energy + Delta-G solvation = -3139.693833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.14192 -38.54102 -35.63616 -33.96111 -32.25121 -31.13617 -30.88342 -28.80325 -28.10411 -25.32929 -23.82157 -22.96710 -22.05006 -20.76439 -20.35913 -19.84825 -19.37993 -17.03837 -15.81609 -15.53387 -15.36869 -15.05377 -14.51937 -14.36800 -14.18675 -14.05523 -13.69177 -13.39033 -12.92366 -12.68122 -12.59230 -12.45345 -12.28809 -12.02977 -11.81883 -11.52348 -11.36251 -11.31420 -11.24309 -10.98099 -10.90884 -10.76541 -10.54967 -10.44318 -10.23595 -10.11938 -9.97422 -9.93584 -9.77003 -8.96223 -8.61007 -8.30034 -7.85834 -6.08813 -4.15507 3.36797 3.47193 3.68732 4.33299 4.50936 4.52937 4.57765 4.60907 4.95292 5.00355 5.11196 5.20232 5.21330 5.30540 5.32732 5.34839 5.44419 5.46626 5.48763 5.60230 5.61992 5.75034 5.77531 5.80835 5.83107 5.88635 5.93601 5.95578 5.97439 6.02218 6.07963 6.10700 6.19858 6.22980 6.26406 6.32507 6.43828 6.49267 6.53835 6.70561 6.91001 7.11782 7.46439 7.64400 7.72359 8.33715 8.89115 9.04213 9.56604 11.02267 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029740 B = 0.003326 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.278997 B = 8415.809530 C = 8724.186397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.083 3.917 3 Si 0.870 3.130 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.226 1.226 7 C -0.534 4.534 8 H 0.076 0.924 9 C 0.217 3.783 10 O -0.581 6.581 11 C -0.139 4.139 12 C 0.039 3.961 13 N -0.497 5.497 14 C 0.043 3.957 15 C -0.112 4.112 16 C -0.114 4.114 17 C -0.086 4.086 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.115 4.115 23 C 0.050 3.950 24 H 0.264 0.736 25 H 0.363 0.637 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.079 0.921 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.220 -7.084 -12.308 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.121 4.121 3 Si 0.698 3.302 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.149 1.149 7 C -0.571 4.571 8 H 0.094 0.906 9 C 0.177 3.823 10 O -0.387 6.387 11 C -0.178 4.178 12 C -0.089 4.089 13 N -0.222 5.222 14 C -0.086 4.086 15 C -0.149 4.149 16 C -0.152 4.152 17 C -0.104 4.104 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.077 4.077 24 H 0.073 0.927 25 H 0.210 0.790 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 16.928 -6.741 -13.041 22.407 hybrid contribution 0.666 0.815 0.684 1.255 sum 17.594 -5.926 -12.357 22.301 Atomic orbital electron populations 1.69954 1.06613 1.27232 1.49115 1.24989 0.94581 0.99610 0.92894 0.87084 0.83035 0.82650 0.77438 1.21610 1.22551 1.14878 1.21336 0.89050 0.94899 1.51844 0.90589 1.19715 0.94211 0.86768 0.81612 1.86511 1.77509 1.58327 1.16358 1.22967 0.98399 1.00442 0.95956 1.23049 0.96228 0.95624 0.94036 1.65307 1.34963 1.06896 1.15002 1.22292 0.92964 0.98617 0.94681 1.21557 0.98850 0.98580 0.95963 1.21615 0.98930 0.98358 0.96295 1.21154 0.98872 0.94863 0.95515 1.21638 1.01285 0.94779 0.97648 1.21543 0.99411 0.98193 0.96653 1.21534 0.98882 0.97000 0.98261 1.21531 1.01124 0.95398 0.97673 1.21590 0.99408 0.98029 0.96189 1.23243 0.97897 0.93399 0.93202 0.92668 0.79044 0.92522 0.90824 0.95024 0.91140 0.91374 0.95352 0.91931 0.91109 0.92028 0.92353 0.91132 0.92253 0.91480 0.92043 0.92269 0.92412 0.92217 0.92065 0.92366 0.92121 0.92187 0.90259 0.95377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.08 2.41 5.43 -17.82 -0.10 2.32 16 3 Si 0.87 22.28 24.05 -169.99 -4.09 18.19 16 4 H -0.29 -7.32 7.09 56.52 0.40 -6.92 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.23 -5.65 5.22 56.52 0.29 -5.35 16 7 C -0.53 -14.97 8.82 -34.44 -0.30 -15.27 16 8 H 0.08 2.31 7.60 -52.48 -0.40 1.91 16 9 C 0.22 5.12 0.90 -90.39 -0.08 5.04 16 10 O -0.58 -13.35 10.16 -35.23 -0.36 -13.71 16 11 C -0.14 -2.80 6.43 -25.35 -0.16 -2.96 16 12 C 0.04 0.69 5.93 -2.09 -0.01 0.68 16 13 N -0.50 -9.84 5.34 -229.84 -1.23 -11.07 16 14 C 0.04 0.69 4.83 -3.83 -0.02 0.67 16 15 C -0.11 -1.47 5.08 -26.73 -0.14 -1.60 16 16 C -0.11 -1.22 4.68 -26.73 -0.13 -1.34 16 17 C -0.09 -0.82 2.19 -90.62 -0.20 -1.01 16 18 C -0.12 -1.07 4.96 -26.74 -0.13 -1.20 16 19 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 20 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 21 C -0.12 -0.93 5.92 -26.74 -0.16 -1.09 16 22 C -0.11 -0.98 5.20 -26.74 -0.14 -1.11 16 23 C 0.05 1.14 4.12 -2.19 -0.01 1.13 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.36 7.22 9.08 45.56 0.41 7.64 16 26 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 27 H 0.07 1.53 7.42 -51.93 -0.39 1.15 16 28 H 0.03 0.53 7.75 -51.93 -0.40 0.13 16 29 H 0.07 1.14 7.86 -51.93 -0.41 0.74 16 30 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 31 H 0.03 0.44 7.77 -51.93 -0.40 0.03 16 32 H 0.06 0.81 5.89 -51.93 -0.31 0.50 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.67 6.56 -51.93 -0.34 0.33 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.08 1.97 4.85 -51.93 -0.25 1.72 16 48 H 0.03 0.62 7.94 -51.92 -0.41 0.21 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -30.85 352.22 -9.95 -40.80 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.47 Total: 5.15 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -1.89 Total: -17.98 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.45 Total: -37.76 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.36 Total: -13.71 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.09 Total: 18.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.85 -9.95 -40.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.974 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds