Wall clock time and date at job start Tue Mar 31 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 119.99895 * 2 1 4 4 H 1.48502 * 109.47470 * 240.00189 * 3 2 1 5 5 H 1.48509 * 109.47193 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47378 * 119.99884 * 3 2 1 7 7 C 1.37872 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00262 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.62427 * 56.89491 * 9 7 2 11 11 C 1.55143 * 110.70417 * 293.60187 * 9 7 2 12 12 C 1.54908 * 101.65125 * 205.96041 * 11 9 7 13 13 N 1.47852 * 104.79440 * 37.06913 * 12 11 9 14 14 C 1.46906 * 110.99526 * 213.63607 * 13 12 11 15 15 C 1.52997 * 109.46945 * 290.84146 * 14 13 12 16 16 C 1.53006 * 109.46646 * 180.02562 * 15 14 13 17 17 C 1.54232 * 108.89646 * 297.88339 * 16 15 14 18 18 C 1.50473 * 108.52454 * 159.26541 * 17 16 15 19 19 C 1.54066 * 112.50207 * 94.15236 * 18 17 16 20 20 C 1.54071 * 112.81232 * 318.28596 * 19 18 17 21 21 C 1.50473 * 112.49608 * 318.28022 * 20 19 18 22 22 C 1.45541 * 108.89291 * 174.99881 * 16 15 14 23 23 C 1.47436 * 108.56819 * 335.90276 * 13 12 11 24 24 H 0.97003 * 120.00733 * 359.97438 * 1 2 3 25 25 H 0.96699 * 114.00014 * 303.10686 * 10 9 7 26 26 H 1.09004 * 110.98771 * 324.05065 * 11 9 7 27 27 H 1.08999 * 110.98980 * 87.83216 * 11 9 7 28 28 H 1.09002 * 110.37273 * 278.24483 * 12 11 9 29 29 H 1.08996 * 110.37299 * 155.89700 * 12 11 9 30 30 H 1.09004 * 109.46292 * 170.84429 * 14 13 12 31 31 H 1.08990 * 109.47009 * 50.84579 * 14 13 12 32 32 H 1.08995 * 109.47505 * 60.00699 * 15 14 13 33 33 H 1.09000 * 109.47175 * 300.00215 * 15 14 13 34 34 H 1.08997 * 108.87042 * 56.40102 * 16 15 14 35 35 H 1.08995 * 109.63321 * 278.97507 * 17 16 15 36 36 H 1.09003 * 109.62925 * 39.55635 * 17 16 15 37 37 H 1.09003 * 108.87881 * 333.37261 * 18 17 16 38 38 H 1.09004 * 108.80073 * 214.87418 * 18 17 16 39 39 H 1.09000 * 108.81916 * 197.42455 * 19 18 17 40 40 H 1.08998 * 108.81428 * 79.14150 * 19 18 17 41 41 H 1.09002 * 108.87390 * 197.50873 * 20 19 18 42 42 H 1.09002 * 108.80171 * 79.00688 * 20 19 18 43 43 H 1.08998 * 109.62892 * 334.45077 * 21 20 19 44 44 H 1.08995 * 109.79062 * 213.95727 * 21 20 19 45 45 H 1.08997 * 108.89839 * 303.44459 * 22 16 15 46 46 H 1.09002 * 108.89376 * 62.03153 * 22 16 15 47 47 H 1.09001 * 109.88796 * 120.39361 * 23 13 12 48 48 H 1.09002 * 109.89234 * 241.58862 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.3672 -2.5702 -1.1201 11 6 0.4731 -2.6834 1.3301 12 6 0.3727 -4.2265 1.4226 13 7 1.6618 -4.7211 0.8937 14 6 1.4856 -5.9954 0.1844 15 6 1.1363 -7.0946 1.1897 16 6 0.9534 -8.4219 0.4509 17 6 -0.2242 -8.2862 -0.5359 18 6 -0.0901 -9.3518 -1.5898 19 6 -0.8942 -10.6214 -1.2503 20 6 -0.7874 -11.0167 0.2350 21 6 0.6108 -10.8691 0.7711 22 6 0.7396 -9.4794 1.4277 23 6 2.2284 -3.6934 0.0012 24 1 -0.4851 0.8400 0.0004 25 1 -0.2676 -1.8423 -1.1671 26 1 1.0356 -2.2776 2.1710 27 1 -0.5163 -2.2301 1.2696 28 1 -0.4530 -4.5904 0.8110 29 1 0.2437 -4.5369 2.4594 30 1 2.4102 -6.2550 -0.3312 31 1 0.6793 -5.8981 -0.5424 32 1 0.2117 -6.8350 1.7052 33 1 1.9427 -7.1918 1.9165 34 1 1.8608 -8.6398 -0.1123 35 1 -1.1658 -8.4155 -0.0023 36 1 -0.1978 -7.3024 -1.0045 37 1 0.9623 -9.6174 -1.6909 38 1 -0.4455 -8.9529 -2.5399 39 1 -0.5247 -11.4453 -1.8608 40 1 -1.9426 -10.4491 -1.4937 41 1 -1.1002 -12.0549 0.3469 42 1 -1.4568 -10.3826 0.8163 43 1 1.3272 -10.9558 -0.0459 44 1 0.8055 -11.6439 1.5126 45 1 1.5795 -9.4936 2.1221 46 1 -0.1738 -9.2671 1.9834 47 1 3.2023 -3.3753 0.3732 48 1 2.3268 -4.0925 -1.0084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592523184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:37 Heat of formation + Delta-G solvation = -79.572657 kcal Electronic energy + Delta-G solvation = -23264.341928 eV Core-core repulsion = 20124.483195 eV Total energy + Delta-G solvation = -3139.858733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.49810 -38.21026 -35.18817 -33.62334 -32.23780 -32.04848 -30.29256 -28.19192 -27.49687 -25.19591 -24.57282 -23.60280 -21.66564 -20.31088 -19.85029 -19.35638 -19.21408 -17.09084 -15.98900 -15.35386 -15.07930 -14.87060 -14.67082 -14.30901 -14.07120 -13.83154 -13.61924 -13.08524 -12.93323 -12.68608 -12.26335 -12.16598 -11.96944 -11.83674 -11.73164 -11.25959 -11.24869 -10.95401 -10.79843 -10.69380 -10.55825 -10.49614 -10.44844 -10.42279 -10.34821 -10.27960 -10.09837 -9.99257 -9.78265 -9.20692 -8.58765 -8.06565 -7.54425 -6.19077 -4.26037 3.25811 3.30257 3.33537 4.31946 4.44070 4.56481 4.73395 4.80126 5.01548 5.07613 5.09584 5.16354 5.23543 5.26630 5.38868 5.52191 5.63220 5.70827 5.75840 5.78464 5.91275 5.93695 5.97070 6.02525 6.06021 6.11956 6.12644 6.15457 6.19902 6.21185 6.30813 6.34609 6.38042 6.38812 6.50239 6.57159 6.60756 6.66288 6.99347 7.12224 7.46203 7.51357 7.74277 7.83688 7.90655 8.17894 8.75047 9.41781 9.55183 10.88127 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040901 B = 0.003263 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.408006 B = 8578.206373 C = 8780.902668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.237 3.763 10 O -0.592 6.592 11 C -0.131 4.131 12 C 0.043 3.957 13 N -0.532 5.532 14 C 0.052 3.948 15 C -0.110 4.110 16 C -0.084 4.084 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.111 4.111 23 C 0.058 3.942 24 H 0.267 0.733 25 H 0.383 0.617 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 -18.416 0.953 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.080 0.920 9 C 0.196 3.804 10 O -0.403 6.403 11 C -0.170 4.170 12 C -0.084 4.084 13 N -0.256 5.256 14 C -0.077 4.077 15 C -0.148 4.148 16 C -0.103 4.103 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.148 4.148 23 C -0.070 4.070 24 H 0.077 0.923 25 H 0.234 0.766 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.912 -18.933 1.239 18.995 hybrid contribution -0.468 1.605 -0.520 1.751 sum -1.381 -17.328 0.719 17.397 Atomic orbital electron populations 1.69581 1.05976 1.27524 1.50978 1.25008 0.94993 0.99461 0.93790 0.86513 0.79552 0.82327 0.78765 1.20128 1.21196 1.20092 1.21598 0.93569 0.90740 1.51090 0.92031 1.19706 0.86239 0.91766 0.82685 1.86072 1.51606 1.53268 1.49310 1.23161 1.01721 0.91506 1.00636 1.23042 0.89869 0.97360 0.98149 1.63655 1.24338 1.02919 1.34714 1.22339 0.99905 0.90312 0.95124 1.21666 1.01693 0.93251 0.98153 1.20075 0.98501 0.94983 0.96713 1.21510 0.98327 0.99033 0.96697 1.21332 1.00375 0.95097 0.98747 1.21909 1.00054 0.97392 0.96006 1.21336 0.97446 1.00621 0.96162 1.21321 0.97210 0.96918 1.00000 1.20525 1.01965 0.94153 0.98178 1.22820 0.98583 0.91533 0.94016 0.92266 0.76555 0.91909 0.91048 0.94638 0.92338 0.91954 0.94480 0.92231 0.91619 0.91658 0.91922 0.91056 0.92197 0.92518 0.92706 0.92567 0.92809 0.92072 0.91755 0.92320 0.92346 0.92263 0.90453 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.29 10.69 55.43 0.59 -23.70 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.46 8.21 -34.44 -0.28 -14.74 16 8 H 0.06 1.66 7.53 -52.49 -0.40 1.26 16 9 C 0.24 5.98 0.86 -89.94 -0.08 5.90 16 10 O -0.59 -15.72 13.09 -35.23 -0.46 -16.18 16 11 C -0.13 -3.10 5.67 -24.59 -0.14 -3.24 16 12 C 0.04 0.88 5.78 -2.29 -0.01 0.86 16 13 N -0.53 -10.54 5.16 -231.25 -1.19 -11.73 16 14 C 0.05 0.86 4.32 -3.82 -0.02 0.84 16 15 C -0.11 -1.49 4.66 -26.73 -0.12 -1.62 16 16 C -0.08 -0.94 1.72 -93.49 -0.16 -1.10 16 17 C -0.12 -1.35 4.91 -27.35 -0.13 -1.48 16 18 C -0.12 -1.18 5.31 -27.44 -0.15 -1.33 16 19 C -0.12 -1.02 5.85 -25.62 -0.15 -1.17 16 20 C -0.12 -1.01 5.32 -27.43 -0.15 -1.16 16 21 C -0.12 -1.02 5.61 -27.34 -0.15 -1.17 16 22 C -0.11 -1.10 4.44 -29.60 -0.13 -1.23 16 23 C 0.06 1.30 6.22 -2.84 -0.02 1.28 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.38 10.36 6.98 45.56 0.32 10.68 16 26 H 0.06 1.52 8.04 -51.93 -0.42 1.11 16 27 H 0.07 1.77 7.76 -51.93 -0.40 1.37 16 28 H 0.04 0.72 7.62 -51.93 -0.40 0.33 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.00 8.03 -51.93 -0.42 0.58 16 31 H 0.04 0.66 5.79 -51.93 -0.30 0.36 16 32 H 0.06 0.84 7.49 -51.93 -0.39 0.46 16 33 H 0.07 0.90 8.07 -51.93 -0.42 0.49 16 34 H 0.07 0.74 7.46 -51.93 -0.39 0.36 16 35 H 0.06 0.71 6.97 -51.93 -0.36 0.35 16 36 H 0.07 0.94 5.74 -51.93 -0.30 0.64 16 37 H 0.06 0.59 6.63 -51.93 -0.34 0.25 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.55 6.62 -51.93 -0.34 0.21 16 43 H 0.06 0.57 6.98 -51.93 -0.36 0.21 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 46 H 0.06 0.60 7.46 -51.93 -0.39 0.21 16 47 H 0.08 1.73 7.63 -51.93 -0.40 1.34 16 48 H 0.04 1.00 7.47 -51.93 -0.39 0.61 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -26.94 349.46 -10.78 -37.73 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -8.18 Total: 10.38 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -1.79 Total: -17.61 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.60 Total: -35.43 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.46 Total: -16.18 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.94 -10.78 -37.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.847 kcal (2) G-P(sol) polarization free energy of solvation -26.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds