Wall clock time and date at job start Tue Mar 31 2020 05:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 O 1.42895 * 110.27542 * 300.69779 * 9 7 2 11 11 C 1.54597 * 110.30944 * 62.79091 * 9 7 2 12 12 C 1.55196 * 102.80223 * 96.97985 * 11 9 7 13 13 N 1.48527 * 103.23670 * 37.43449 * 12 11 9 14 14 C 1.46905 * 111.00154 * 200.25513 * 13 12 11 15 15 C 1.52997 * 109.47012 * 287.39988 * 14 13 12 16 16 C 1.53002 * 109.46961 * 179.97438 * 15 14 13 17 17 C 1.54245 * 108.89336 * 296.38944 * 16 15 14 18 18 C 1.50557 * 108.48164 * 159.17982 * 17 16 15 19 19 C 1.54067 * 112.41555 * 94.26843 * 18 17 16 20 20 C 1.54069 * 112.81557 * 318.28058 * 19 18 17 21 21 C 1.50473 * 112.49555 * 318.28123 * 20 19 18 22 22 C 1.45547 * 108.89540 * 173.60515 * 16 15 14 23 23 C 1.47903 * 105.82391 * 320.76695 * 13 12 11 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 0.96703 * 114.00199 * 59.30029 * 10 9 7 26 26 H 1.09004 * 110.72014 * 215.31733 * 11 9 7 27 27 H 1.08997 * 110.72418 * 338.60078 * 11 9 7 28 28 H 1.08993 * 110.68079 * 278.98626 * 12 11 9 29 29 H 1.09002 * 110.78750 * 155.93216 * 12 11 9 30 30 H 1.09002 * 109.46971 * 47.39269 * 14 13 12 31 31 H 1.08999 * 109.47472 * 167.39346 * 14 13 12 32 32 H 1.08998 * 109.47138 * 299.99582 * 15 14 13 33 33 H 1.08999 * 109.47526 * 59.99391 * 15 14 13 34 34 H 1.08991 * 108.87313 * 54.99937 * 16 15 14 35 35 H 1.08999 * 109.63015 * 278.97161 * 17 16 15 36 36 H 1.09001 * 109.62670 * 39.55980 * 17 16 15 37 37 H 1.09004 * 108.92513 * 333.51461 * 18 17 16 38 38 H 1.08996 * 108.83815 * 214.96521 * 18 17 16 39 39 H 1.08999 * 108.81215 * 197.42305 * 19 18 17 40 40 H 1.08993 * 108.72966 * 79.07650 * 19 18 17 41 41 H 1.08996 * 108.88033 * 197.50689 * 20 19 18 42 42 H 1.09000 * 108.87775 * 79.05799 * 20 19 18 43 43 H 1.09001 * 109.63300 * 334.44940 * 21 20 19 44 44 H 1.08999 * 109.63230 * 213.85866 * 21 20 19 45 45 H 1.09006 * 108.89381 * 303.43912 * 22 16 15 46 46 H 1.09000 * 108.89627 * 62.02419 * 22 16 15 47 47 H 1.08995 * 109.91658 * 265.98132 * 23 13 12 48 48 H 1.08998 * 109.91705 * 144.68191 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 8 4.0018 -0.5070 -1.1651 11 6 4.0535 -0.5344 1.2767 12 6 4.3491 -1.7542 2.1894 13 7 4.8676 -2.7718 1.2397 14 6 4.7559 -4.1236 1.8037 15 6 5.7986 -4.3028 2.9090 16 6 5.6818 -5.7106 3.4968 17 6 4.2981 -5.8610 4.1616 18 6 3.9794 -7.3282 4.2737 19 6 4.3804 -7.9137 5.6412 20 6 5.7478 -7.4014 6.1327 21 6 6.7711 -7.3442 5.0310 22 6 6.7727 -5.9207 4.4372 23 6 4.0461 -2.6381 0.0172 24 1 -0.4849 0.8401 0.0041 25 1 3.7148 0.4144 -1.2255 26 1 4.9667 0.0237 1.0696 27 1 3.2991 0.1114 1.7260 28 1 3.4360 -2.1060 2.6695 29 1 5.1033 -1.5051 2.9359 30 1 3.7580 -4.2624 2.2198 31 1 4.9280 -4.8602 1.0189 32 1 6.7965 -4.1640 2.4931 33 1 5.6265 -3.5663 3.6938 34 1 5.7666 -6.4379 2.6896 35 1 4.3183 -5.4122 5.1548 36 1 3.5423 -5.3689 3.5495 37 1 4.5121 -7.8666 3.4897 38 1 2.9079 -7.4675 4.1310 39 1 4.4205 -9.0000 5.5604 40 1 3.6200 -7.6440 6.3740 41 1 6.1115 -8.0644 6.9176 42 1 5.6212 -6.4018 6.5486 43 1 6.5138 -8.0645 4.2544 44 1 7.7572 -7.5735 5.4348 45 1 7.7191 -5.7539 3.9228 46 1 6.6816 -5.2004 5.2502 47 1 3.2141 -3.3415 0.0501 48 1 4.6591 -2.8249 -0.8645 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592523185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:39 Heat of formation + Delta-G solvation = -58.230625 kcal Electronic energy + Delta-G solvation = -23323.138405 eV Core-core repulsion = 20184.205132 eV Total energy + Delta-G solvation = -3138.933274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.55770 -38.50840 -35.63225 -33.86688 -32.39444 -32.26625 -30.62502 -28.32332 -27.65301 -25.31552 -24.66059 -23.61853 -21.96564 -20.52369 -20.14679 -19.52809 -19.30058 -17.11187 -16.12215 -15.83158 -15.40151 -15.19569 -14.68683 -14.41033 -14.13941 -13.68521 -13.59342 -13.37361 -13.04236 -12.85165 -12.61572 -12.32681 -12.23712 -12.21258 -11.81001 -11.80002 -11.45229 -11.27197 -10.82686 -10.75153 -10.66287 -10.53067 -10.47087 -10.44923 -10.33572 -10.18633 -10.11170 -9.99147 -9.69836 -9.16820 -8.77378 -8.46468 -7.78088 -6.27114 -4.31395 3.11177 3.19187 3.25483 4.19743 4.35176 4.51222 4.69047 4.70702 4.92954 4.97393 5.04270 5.11898 5.19457 5.21988 5.33223 5.42029 5.49073 5.58233 5.61343 5.67531 5.72769 5.80529 5.85691 5.90870 5.92992 6.01816 6.03337 6.07564 6.09914 6.11746 6.14168 6.24960 6.27369 6.30438 6.35087 6.49417 6.52609 6.52720 6.67186 6.77885 6.87747 7.01952 7.27991 7.62190 7.69713 8.29563 8.74827 8.78902 9.32758 10.85535 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030685 B = 0.003618 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.287656 B = 7736.449920 C = 8080.122144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.843 3.157 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.232 1.232 7 C -0.535 4.535 8 H 0.079 0.921 9 C 0.210 3.790 10 O -0.575 6.575 11 C -0.151 4.151 12 C 0.046 3.954 13 N -0.520 5.520 14 C 0.045 3.955 15 C -0.109 4.109 16 C -0.084 4.084 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.111 4.111 23 C 0.063 3.937 24 H 0.267 0.733 25 H 0.349 0.651 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.051 0.949 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.443 -12.031 11.044 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.127 4.127 3 Si 0.670 3.330 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.156 1.156 7 C -0.573 4.573 8 H 0.097 0.903 9 C 0.171 3.829 10 O -0.383 6.383 11 C -0.189 4.189 12 C -0.082 4.082 13 N -0.244 5.244 14 C -0.083 4.083 15 C -0.147 4.147 16 C -0.103 4.103 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.149 4.149 23 C -0.064 4.064 24 H 0.077 0.923 25 H 0.198 0.802 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.101 -12.433 10.820 20.447 hybrid contribution -0.997 1.317 0.290 1.677 sum 11.104 -11.116 11.110 19.243 Atomic orbital electron populations 1.69895 1.06217 1.27270 1.48999 1.25038 0.94838 0.99142 0.93713 0.87778 0.82147 0.83937 0.79123 1.19972 1.21317 1.15632 1.21515 0.88867 0.95020 1.51851 0.90338 1.19986 0.92826 0.88518 0.81603 1.86465 1.76768 1.26877 1.48239 1.23690 0.99833 0.96800 0.98608 1.23109 0.97441 0.92737 0.94923 1.64765 1.51381 1.03259 1.05014 1.22343 0.97736 0.91420 0.96811 1.21644 0.99705 0.95773 0.97571 1.20083 0.94912 0.97451 0.97831 1.21522 0.96878 0.96098 1.01025 1.21350 1.00783 0.96401 0.97059 1.21911 0.96636 0.99751 0.97096 1.21338 0.94927 1.01373 0.97951 1.21325 0.98401 0.97381 0.98340 1.20530 0.98604 0.96528 0.99198 1.22615 0.94873 0.96610 0.92332 0.92308 0.80172 0.92461 0.90974 0.93571 0.91579 0.94258 0.91552 0.91506 0.92150 0.91565 0.91843 0.91158 0.92169 0.92462 0.92667 0.92541 0.92804 0.92085 0.91708 0.92308 0.92337 0.92250 0.93056 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 2 C 0.08 2.14 5.36 -17.82 -0.10 2.04 16 3 Si 0.84 19.73 23.21 -169.99 -3.94 15.78 16 4 H -0.27 -6.27 7.03 56.52 0.40 -5.88 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.23 -5.02 4.44 56.52 0.25 -4.77 16 7 C -0.53 -14.87 8.84 -34.44 -0.30 -15.17 16 8 H 0.08 2.37 7.59 -52.49 -0.40 1.97 16 9 C 0.21 5.09 0.96 -90.41 -0.09 5.00 16 10 O -0.57 -14.26 12.91 -35.23 -0.45 -14.71 16 11 C -0.15 -3.29 4.24 -24.73 -0.10 -3.40 16 12 C 0.05 0.87 5.92 -1.76 -0.01 0.86 16 13 N -0.52 -9.72 5.24 -230.28 -1.21 -10.93 16 14 C 0.05 0.69 4.48 -3.82 -0.02 0.68 16 15 C -0.11 -1.38 4.69 -26.73 -0.13 -1.50 16 16 C -0.08 -0.88 1.71 -93.48 -0.16 -1.04 16 17 C -0.12 -1.26 4.91 -27.30 -0.13 -1.39 16 18 C -0.12 -1.13 5.32 -27.40 -0.15 -1.28 16 19 C -0.12 -0.99 5.85 -25.62 -0.15 -1.14 16 20 C -0.12 -0.97 5.31 -27.43 -0.15 -1.12 16 21 C -0.12 -0.97 5.61 -27.34 -0.15 -1.13 16 22 C -0.11 -1.04 4.44 -29.60 -0.13 -1.17 16 23 C 0.06 1.36 6.13 -2.75 -0.02 1.35 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.35 8.24 4.53 45.56 0.21 8.45 16 26 H 0.06 1.21 7.83 -51.93 -0.41 0.80 16 27 H 0.07 1.62 5.14 -51.93 -0.27 1.36 16 28 H 0.05 0.90 7.81 -51.93 -0.41 0.50 16 29 H 0.07 1.11 7.80 -51.93 -0.40 0.70 16 30 H 0.04 0.63 5.83 -51.93 -0.30 0.32 16 31 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 33 H 0.06 0.79 7.36 -51.93 -0.38 0.40 16 34 H 0.07 0.71 7.46 -51.93 -0.39 0.32 16 35 H 0.06 0.68 6.97 -51.93 -0.36 0.31 16 36 H 0.07 0.85 5.82 -51.93 -0.30 0.55 16 37 H 0.06 0.57 6.63 -51.93 -0.34 0.22 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.53 6.62 -51.93 -0.34 0.18 16 43 H 0.06 0.55 6.98 -51.93 -0.36 0.19 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 46 H 0.06 0.57 7.46 -51.93 -0.39 0.18 16 47 H 0.05 1.12 7.02 -51.93 -0.36 0.76 16 48 H 0.07 1.55 7.96 -51.93 -0.41 1.14 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -29.21 337.70 -9.81 -39.02 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -8.29 Total: 9.77 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.78 Total: -18.40 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.43 Total: -36.55 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.45 Total: -14.71 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -3.94 Total: 15.78 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.21 -9.81 -39.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.206 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds