Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46741 * 2 1 4 4 C 1.52999 * 109.46975 * 240.00523 * 2 1 3 5 5 C 1.52997 * 109.47435 * 119.99861 * 2 1 3 6 6 C 1.53002 * 109.47043 * 60.00324 * 5 2 1 7 7 H 1.09001 * 115.56131 * 29.30612 * 6 5 2 8 8 C 1.53006 * 117.49683 * 243.62421 * 6 5 2 9 9 C 1.53001 * 117.50028 * 175.00024 * 6 5 2 10 10 H 1.08999 * 117.51244 * 0.02562 * 9 6 5 11 11 C 1.50703 * 117.49836 * 214.97713 * 9 6 5 12 12 O 1.21279 * 119.99926 * 359.97438 * 11 9 6 13 13 N 1.34775 * 119.99773 * 179.97438 * 11 9 6 14 14 C 1.46496 * 119.99642 * 180.02562 * 13 11 9 15 15 C 1.53006 * 109.46995 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46626 * 299.99666 * 15 14 13 17 17 C 1.52997 * 109.47164 * 59.99963 * 15 14 13 18 18 C 1.50698 * 109.47184 * 180.02562 * 15 14 13 19 19 H 1.08005 * 119.99819 * 359.97438 * 18 15 14 20 20 C 1.37875 * 120.00046 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00192 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99979 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.47309 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47510 * 119.99847 * 22 20 18 25 25 H 1.48506 * 109.47246 * 239.99882 * 22 20 18 26 26 H 1.09006 * 109.46888 * 299.99649 * 1 2 3 27 27 H 1.08995 * 109.47413 * 59.99784 * 1 2 3 28 28 H 1.09000 * 109.46634 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46828 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47348 * 300.00260 * 3 2 1 31 31 H 1.08994 * 109.47328 * 60.00221 * 3 2 1 32 32 H 1.09000 * 109.46700 * 299.99054 * 4 2 1 33 33 H 1.08995 * 109.47301 * 59.99624 * 4 2 1 34 34 H 1.08994 * 109.47011 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47157 * 300.00099 * 5 2 1 36 36 H 1.09007 * 109.47050 * 179.97438 * 5 2 1 37 37 H 1.08993 * 117.49457 * 145.02147 * 8 6 5 38 38 H 1.08999 * 117.51804 * 359.97438 * 8 6 5 39 39 H 0.96998 * 120.00166 * 0.02562 * 13 11 9 40 40 H 1.09001 * 109.47464 * 60.00642 * 14 13 11 41 41 H 1.09001 * 109.47459 * 300.00357 * 14 13 11 42 42 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 43 43 H 1.09002 * 109.46719 * 180.02562 * 16 15 14 44 44 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 45 45 H 1.09001 * 109.47375 * 59.99966 * 17 15 14 46 46 H 1.09002 * 109.46777 * 180.02562 * 17 15 14 47 47 H 1.09000 * 109.47140 * 299.99948 * 17 15 14 48 48 H 0.96996 * 120.00505 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5301 -2.1637 1.2492 7 1 1.3622 -2.6032 0.2660 8 6 0.5861 -2.5793 2.3794 9 6 2.0286 -3.0893 2.3609 10 1 2.7195 -2.6706 3.0926 11 6 2.2498 -4.5387 2.0126 12 8 2.0329 -4.9316 0.8859 13 7 2.6888 -5.3983 2.9533 14 6 2.9043 -6.8072 2.6146 15 6 3.3987 -7.5593 3.8519 16 6 4.7144 -6.9430 4.3314 17 6 2.3523 -7.4563 4.9633 18 6 3.6211 -9.0085 3.5034 19 1 3.4286 -9.3582 2.4998 20 6 4.0692 -9.8881 4.4659 21 7 4.3031 -9.4624 5.6880 22 14 4.3442 -11.6845 4.0340 23 1 4.0099 -11.9067 2.6042 24 1 5.7667 -12.0386 4.2711 25 1 3.4738 -12.5367 4.8835 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7488 -1.2492 33 1 1.6766 -0.2073 -2.1392 34 1 3.1299 -0.7207 -1.2495 35 1 1.6768 -0.2074 2.1391 36 1 3.1301 -0.7216 1.2489 37 1 -0.2027 -3.2922 2.1396 38 1 0.3285 -1.8254 3.1232 39 1 2.8619 -5.0842 3.8545 40 1 3.6496 -6.8806 1.8226 41 1 1.9670 -7.2464 2.2732 42 1 4.5540 -5.8947 4.5834 43 1 5.0669 -7.4791 5.2126 44 1 5.4599 -7.0163 3.5397 45 1 1.4149 -7.8954 4.6216 46 1 2.7047 -7.9918 5.8449 47 1 2.1919 -6.4080 5.2153 48 1 4.6180 -10.0813 6.3653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592639864.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = -48.973576 kcal Electronic energy + Delta-G solvation = -22556.739084 eV Core-core repulsion = 19418.207226 eV Total energy + Delta-G solvation = -3138.531858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.82316 -38.27033 -36.48772 -35.36770 -33.22138 -30.84708 -27.93293 -27.45450 -27.39284 -25.89853 -25.72153 -25.16185 -23.03720 -21.18956 -19.68806 -18.86245 -18.73819 -17.12271 -15.85054 -15.42362 -15.02860 -14.78641 -14.71472 -14.48038 -14.35779 -13.74095 -13.41708 -13.02471 -12.91038 -12.73933 -12.38584 -12.26378 -12.15852 -11.88282 -11.84848 -11.64215 -11.38769 -11.19693 -11.08391 -10.91496 -10.87222 -10.66521 -10.57187 -10.38866 -10.20666 -10.15872 -9.96377 -9.63001 -9.51701 -9.18975 -8.77138 -8.44198 -8.28581 -6.02111 -4.12084 2.89904 3.27100 3.35660 3.40253 3.66614 3.96251 4.39661 4.51206 4.60185 4.67370 4.91095 4.95214 5.02892 5.24697 5.27433 5.35691 5.40922 5.43893 5.48449 5.62320 5.65328 5.69579 5.71842 5.75230 5.88585 5.93243 5.98202 6.10868 6.18559 6.21737 6.26260 6.33998 6.40654 6.52059 6.79401 6.83453 6.95067 7.02504 7.07032 7.36400 7.56146 7.69771 8.01342 8.09262 8.18327 8.39128 8.76188 8.89304 9.53799 10.99372 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.041170 B = 0.002886 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.944377 B = 9701.003738 C = 9854.646287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.079 4.079 6 C -0.118 4.118 7 H 0.121 0.879 8 C -0.151 4.151 9 C -0.189 4.189 10 H 0.118 0.882 11 C 0.532 3.468 12 O -0.555 6.555 13 N -0.713 5.713 14 C 0.132 3.868 15 C 0.056 3.944 16 C -0.131 4.131 17 C -0.131 4.131 18 C -0.505 4.505 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.398 0.602 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.006 0.994 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.085 0.915 47 H 0.007 0.993 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.191 19.292 -5.560 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 C -0.199 4.199 4 C -0.203 4.203 5 C -0.117 4.117 6 C -0.136 4.136 7 H 0.139 0.861 8 C -0.188 4.188 9 C -0.210 4.210 10 H 0.136 0.864 11 C 0.318 3.682 12 O -0.434 6.434 13 N -0.362 5.362 14 C 0.009 3.991 15 C 0.055 3.945 16 C -0.189 4.189 17 C -0.189 4.189 18 C -0.544 4.544 19 H 0.076 0.924 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.233 0.767 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.025 0.975 43 H 0.104 0.896 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.104 0.896 47 H 0.025 0.975 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.268 18.898 -6.180 20.568 hybrid contribution 0.342 -0.934 0.395 1.070 sum -4.926 17.964 -5.785 19.504 Atomic orbital electron populations 1.21879 0.94501 1.02220 1.01202 1.20505 0.95828 0.95022 0.95322 1.21875 1.00949 0.95483 1.01545 1.21958 1.01050 1.00804 0.96496 1.21280 1.00461 0.92464 0.97461 1.22473 1.01520 0.94368 0.95268 0.86145 1.23061 0.91456 1.02871 1.01420 1.22356 1.00101 0.93649 1.04888 0.86358 1.19609 0.77122 0.86407 0.85063 1.90645 1.52537 1.79017 1.21230 1.46244 1.66037 1.10697 1.13255 1.21712 0.99796 0.77862 0.99696 1.18355 0.92254 0.94192 0.89680 1.21830 0.98573 0.95931 1.02531 1.21830 0.97936 0.96684 1.02415 1.21035 1.44345 0.92296 0.96683 0.92407 1.24882 0.95086 0.98636 0.94951 1.69811 1.45962 1.34523 1.02198 0.86520 0.77738 0.85040 0.78613 1.19758 1.21054 1.21060 0.92879 0.93095 0.92066 0.92716 0.92761 0.92791 0.91839 0.92983 0.92692 0.91687 0.91416 0.88490 0.88187 0.76675 0.92797 0.92837 0.97485 0.89589 0.95459 0.95469 0.89593 0.97453 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.23 37.16 0.31 -0.84 16 2 C -0.07 -0.56 0.80 -154.51 -0.12 -0.68 16 3 C -0.14 -1.03 8.47 37.16 0.31 -0.71 16 4 C -0.15 -1.34 8.23 37.16 0.31 -1.03 16 5 C -0.08 -0.73 4.55 -26.73 -0.12 -0.85 16 6 C -0.12 -1.35 3.77 -90.62 -0.34 -1.70 16 7 H 0.12 1.62 5.58 -51.93 -0.29 1.33 16 8 C -0.15 -1.67 9.88 -26.72 -0.26 -1.93 16 9 C -0.19 -2.46 5.91 -91.77 -0.54 -3.01 16 10 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 11 C 0.53 9.44 7.61 -10.98 -0.08 9.36 16 12 O -0.56 -11.81 16.26 5.56 0.09 -11.72 16 13 N -0.71 -13.00 4.96 -60.29 -0.30 -13.30 16 14 C 0.13 2.86 4.50 -4.04 -0.02 2.84 16 15 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 16 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 17 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 18 C -0.50 -13.35 8.01 -34.44 -0.28 -13.63 16 19 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.89 -23.73 9.35 55.43 0.52 -23.21 16 22 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.55 7.20 -51.93 -0.37 0.18 16 29 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.67 6.14 -51.93 -0.32 0.35 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 36 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.10 0.89 8.03 -51.93 -0.42 0.47 16 39 H 0.40 6.58 6.16 -40.82 -0.25 6.33 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 43 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 47 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 48 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -28.30 370.10 -8.41 -36.71 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.86 Total: 4.80 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -0.41 Total: -14.67 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.22 Total: -36.51 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.30 -8.41 -36.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592639864.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.261 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds